BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Teemu Murtola <teemu.murtola@gmail.com>
	Sat, 6 Sep 2014 16:43:24 +0000 (19:43 +0300)
committer	Mark Abraham <mark.j.abraham@gmail.com>
	Thu, 11 Sep 2014 10:14:49 +0000 (12:14 +0200)
commit	30692f54df98c3e8612dfdb1aa288ed51a7444b3
tree	acf31276130cde4058c083b51f38ee6393e6b518	tree \| snapshot
parent	8fc4edf35c768e4669814c118bf518578637339b	commit \| diff

Sort all includes in src/gromacs

Used:
admin/reformat_all.sh --pattern=src/gromacs includesort -B=../build
after building the doc-check target (whose dependencies are needed for
the sorter).

Change-Id: Icde0fb5cb5bc082fb4381d4cba1211329bad3fa5

714 files changed:

src/gromacs/analysisdata.h		diff \| blob \| history
src/gromacs/analysisdata/abstractdata.cpp		diff \| blob \| history
src/gromacs/analysisdata/abstractdata.h		diff \| blob \| history
src/gromacs/analysisdata/analysisdata.cpp		diff \| blob \| history
src/gromacs/analysisdata/analysisdata.h		diff \| blob \| history
src/gromacs/analysisdata/arraydata.cpp		diff \| blob \| history
src/gromacs/analysisdata/arraydata.h		diff \| blob \| history
src/gromacs/analysisdata/dataframe.h		diff \| blob \| history
src/gromacs/analysisdata/datamodule.cpp		diff \| blob \| history
src/gromacs/analysisdata/datamodulemanager.cpp		diff \| blob \| history
src/gromacs/analysisdata/datamodulemanager.h		diff \| blob \| history
src/gromacs/analysisdata/dataproxy.h		diff \| blob \| history
src/gromacs/analysisdata/datastorage.h		diff \| blob \| history
src/gromacs/analysisdata/modules/average.h		diff \| blob \| history
src/gromacs/analysisdata/modules/displacement.cpp		diff \| blob \| history
src/gromacs/analysisdata/modules/displacement.h		diff \| blob \| history
src/gromacs/analysisdata/modules/frameaverager.h		diff \| blob \| history
src/gromacs/analysisdata/modules/histogram.cpp		diff \| blob \| history
src/gromacs/analysisdata/modules/histogram.h		diff \| blob \| history
src/gromacs/analysisdata/modules/lifetime.h		diff \| blob \| history
src/gromacs/analysisdata/modules/plot.cpp		diff \| blob \| history
src/gromacs/analysisdata/modules/plot.h		diff \| blob \| history
src/gromacs/analysisdata/tests/analysisdata.cpp		diff \| blob \| history
src/gromacs/analysisdata/tests/arraydata.cpp		diff \| blob \| history
src/gromacs/analysisdata/tests/average.cpp		diff \| blob \| history
src/gromacs/analysisdata/tests/histogram.cpp		diff \| blob \| history
src/gromacs/analysisdata/tests/lifetime.cpp		diff \| blob \| history
src/gromacs/bonded/bonded.cpp		diff \| blob \| history
src/gromacs/bonded/bonded.h		diff \| blob \| history
src/gromacs/bonded/restcbt.h		diff \| blob \| history
src/gromacs/commandline.h		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpcontext.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpcontext.h		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpmodule.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpmodule.h		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpwriter.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpwriter.h		diff \| blob \| history
src/gromacs/commandline/cmdlineinit.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlineinit.h		diff \| blob \| history
src/gromacs/commandline/cmdlinemodulemanager-impl.h		diff \| blob \| history
src/gromacs/commandline/cmdlinemodulemanager.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinemodulemanager.h		diff \| blob \| history
src/gromacs/commandline/cmdlineparser.h		diff \| blob \| history
src/gromacs/commandline/cmdlineprogramcontext.h		diff \| blob \| history
src/gromacs/commandline/pargs.cpp		diff \| blob \| history
src/gromacs/commandline/pargs.h		diff \| blob \| history
src/gromacs/commandline/shellcompletions.cpp		diff \| blob \| history
src/gromacs/commandline/tests/cmdlinehelpwriter.cpp		diff \| blob \| history
src/gromacs/commandline/tests/cmdlinemodulemanager.cpp		diff \| blob \| history
src/gromacs/commandline/tests/cmdlineparser.cpp		diff \| blob \| history
src/gromacs/commandline/tests/cmdlineprogramcontext.cpp		diff \| blob \| history
src/gromacs/essentialdynamics/edsam.c		diff \| blob \| history
src/gromacs/essentialdynamics/edsam.h		diff \| blob \| history
src/gromacs/fft/fft.cpp		diff \| blob \| history
src/gromacs/fft/fft.h		diff \| blob \| history
src/gromacs/fft/fft5d.cpp		diff \| blob \| history
src/gromacs/fft/fft_fftpack.cpp		diff \| blob \| history
src/gromacs/fft/fft_fftw3.cpp		diff \| blob \| history
src/gromacs/fft/parallel_3dfft.cpp		diff \| blob \| history
src/gromacs/fft/parallel_3dfft.h		diff \| blob \| history
src/gromacs/fft/tests/fft.cpp		diff \| blob \| history
src/gromacs/fileio/confio.c		diff \| blob \| history
src/gromacs/fileio/confio.h		diff \| blob \| history
src/gromacs/fileio/enxio.c		diff \| blob \| history
src/gromacs/fileio/enxio.h		diff \| blob \| history
src/gromacs/fileio/filenm.c		diff \| blob \| history
src/gromacs/fileio/filenm.h		diff \| blob \| history
src/gromacs/fileio/gmx_system_xdr.c		diff \| blob \| history
src/gromacs/fileio/gmxfio.c		diff \| blob \| history
src/gromacs/fileio/gmxfio.h		diff \| blob \| history
src/gromacs/fileio/gmxfio_asc.c		diff \| blob \| history
src/gromacs/fileio/gmxfio_bin.c		diff \| blob \| history
src/gromacs/fileio/gmxfio_int.h		diff \| blob \| history
src/gromacs/fileio/gmxfio_rw.c		diff \| blob \| history
src/gromacs/fileio/gmxfio_xdr.c		diff \| blob \| history
src/gromacs/fileio/libxdrf.c		diff \| blob \| history
src/gromacs/fileio/matio.h		diff \| blob \| history
src/gromacs/fileio/md5.c		diff \| blob \| history
src/gromacs/fileio/mdoutf.c		diff \| blob \| history
src/gromacs/fileio/mdoutf.h		diff \| blob \| history
src/gromacs/fileio/mtxio.h		diff \| blob \| history
src/gromacs/fileio/pdbio.c		diff \| blob \| history
src/gromacs/fileio/pdbio.h		diff \| blob \| history
src/gromacs/fileio/strdb.c		diff \| blob \| history
src/gromacs/fileio/strdb.h		diff \| blob \| history
src/gromacs/fileio/tests/tngio.cpp		diff \| blob \| history
src/gromacs/fileio/timecontrol.c		diff \| blob \| history
src/gromacs/fileio/tngio.cpp		diff \| blob \| history
src/gromacs/fileio/tngio_for_tools.cpp		diff \| blob \| history
src/gromacs/fileio/tpxio.c		diff \| blob \| history
src/gromacs/fileio/tpxio.h		diff \| blob \| history
src/gromacs/fileio/trajectory_writing.c		diff \| blob \| history
src/gromacs/fileio/trajectory_writing.h		diff \| blob \| history
src/gromacs/fileio/trnio.c		diff \| blob \| history
src/gromacs/fileio/trnio.h		diff \| blob \| history
src/gromacs/fileio/trx.h		diff \| blob \| history
src/gromacs/fileio/trxio.c		diff \| blob \| history
src/gromacs/fileio/trxio.h		diff \| blob \| history
src/gromacs/fileio/vmdio.c		diff \| blob \| history
src/gromacs/fileio/writeps.c		diff \| blob \| history
src/gromacs/fileio/writeps.h		diff \| blob \| history
src/gromacs/fileio/xdrd.c		diff \| blob \| history
src/gromacs/fileio/xdrf.h		diff \| blob \| history
src/gromacs/fileio/xtcio.h		diff \| blob \| history
src/gromacs/fileio/xvgr.cpp		diff \| blob \| history
src/gromacs/fileio/xvgr.h		diff \| blob \| history
src/gromacs/gmxana/anadih.c		diff \| blob \| history
src/gromacs/gmxana/autocorr.c		diff \| blob \| history
src/gromacs/gmxana/cmat.c		diff \| blob \| history
src/gromacs/gmxana/correl.c		diff \| blob \| history
src/gromacs/gmxana/correl.h		diff \| blob \| history
src/gromacs/gmxana/dens_filter.c		diff \| blob \| history
src/gromacs/gmxana/dlist.c		diff \| blob \| history
src/gromacs/gmxana/edittop.c		diff \| blob \| history
src/gromacs/gmxana/eigio.c		diff \| blob \| history
src/gromacs/gmxana/expfit.c		diff \| blob \| history
src/gromacs/gmxana/fitahx.c		diff \| blob \| history
src/gromacs/gmxana/fitahx.h		diff \| blob \| history
src/gromacs/gmxana/geminate.c		diff \| blob \| history
src/gromacs/gmxana/gmx_anadock.c		diff \| blob \| history
src/gromacs/gmxana/gmx_anaeig.c		diff \| blob \| history
src/gromacs/gmxana/gmx_analyze.c		diff \| blob \| history
src/gromacs/gmxana/gmx_angle.c		diff \| blob \| history
src/gromacs/gmxana/gmx_bar.c		diff \| blob \| history
src/gromacs/gmxana/gmx_bundle.c		diff \| blob \| history
src/gromacs/gmxana/gmx_chi.c		diff \| blob \| history
src/gromacs/gmxana/gmx_cluster.c		diff \| blob \| history
src/gromacs/gmxana/gmx_clustsize.c		diff \| blob \| history
src/gromacs/gmxana/gmx_confrms.c		diff \| blob \| history
src/gromacs/gmxana/gmx_covar.c		diff \| blob \| history
src/gromacs/gmxana/gmx_current.c		diff \| blob \| history
src/gromacs/gmxana/gmx_density.c		diff \| blob \| history
src/gromacs/gmxana/gmx_densmap.c		diff \| blob \| history
src/gromacs/gmxana/gmx_densorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dielectric.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dipoles.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_disre.c		diff \| blob \| history
src/gromacs/gmxana/gmx_do_dssp.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dos.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dyecoupl.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dyndom.c		diff \| blob \| history
src/gromacs/gmxana/gmx_editconf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_eneconv.c		diff \| blob \| history
src/gromacs/gmxana/gmx_enemat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_energy.c		diff \| blob \| history
src/gromacs/gmxana/gmx_filter.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genion.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genpr.c		diff \| blob \| history
src/gromacs/gmxana/gmx_gyrate.c		diff \| blob \| history
src/gromacs/gmxana/gmx_h2order.c		diff \| blob \| history
src/gromacs/gmxana/gmx_hbond.c		diff \| blob \| history
src/gromacs/gmxana/gmx_helix.c		diff \| blob \| history
src/gromacs/gmxana/gmx_helixorient.c		diff \| blob \| history
src/gromacs/gmxana/gmx_hydorder.c		diff \| blob \| history
src/gromacs/gmxana/gmx_lie.c		diff \| blob \| history
src/gromacs/gmxana/gmx_make_edi.c		diff \| blob \| history
src/gromacs/gmxana/gmx_make_ndx.c		diff \| blob \| history
src/gromacs/gmxana/gmx_mdmat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_mindist.c		diff \| blob \| history
src/gromacs/gmxana/gmx_mk_angndx.c		diff \| blob \| history
src/gromacs/gmxana/gmx_morph.c		diff \| blob \| history
src/gromacs/gmxana/gmx_msd.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmeig.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmens.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmtraj.c		diff \| blob \| history
src/gromacs/gmxana/gmx_options.c		diff \| blob \| history
src/gromacs/gmxana/gmx_order.c		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_polystat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_potential.c		diff \| blob \| history
src/gromacs/gmxana/gmx_principal.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rama.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rdf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rms.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rmsdist.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rmsf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rotacf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rotmat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_saltbr.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sans.c		diff \| blob \| history
src/gromacs/gmxana/gmx_saxs.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sham.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sigeps.c		diff \| blob \| history
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src/gromacs/gmxana/gmx_spatial.c		diff \| blob \| history
src/gromacs/gmxana/gmx_spol.c		diff \| blob \| history
src/gromacs/gmxana/gmx_tcaf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_traj.c		diff \| blob \| history
src/gromacs/gmxana/gmx_trjcat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_trjconv.c		diff \| blob \| history
src/gromacs/gmxana/gmx_trjorder.c		diff \| blob \| history
src/gromacs/gmxana/gmx_tune_pme.c		diff \| blob \| history
src/gromacs/gmxana/gmx_vanhove.c		diff \| blob \| history
src/gromacs/gmxana/gmx_velacc.c		diff \| blob \| history
src/gromacs/gmxana/gmx_wham.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_wheel.c		diff \| blob \| history
src/gromacs/gmxana/gmx_xpm2ps.c		diff \| blob \| history
src/gromacs/gmxana/gstat.h		diff \| blob \| history
src/gromacs/gmxana/hxprops.c		diff \| blob \| history
src/gromacs/gmxana/hxprops.h		diff \| blob \| history
src/gromacs/gmxana/legacytests/gmx_traj_tests.cpp		diff \| blob \| history
src/gromacs/gmxana/nrama.c		diff \| blob \| history
src/gromacs/gmxana/nrama.h		diff \| blob \| history
src/gromacs/gmxana/polynomials.c		diff \| blob \| history
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src/gromacs/gmxana/pp2shift.c		diff \| blob \| history
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src/gromacs/gmxlib/calcgrid.c		diff \| blob \| history
src/gromacs/gmxlib/chargegroup.c		diff \| blob \| history
src/gromacs/gmxlib/checkpoint.cpp		diff \| blob \| history
src/gromacs/gmxlib/conformation-utilities.c		diff \| blob \| history
src/gromacs/gmxlib/conformation-utilities.h		diff \| blob \| history
src/gromacs/gmxlib/copyrite.cpp		diff \| blob \| history
src/gromacs/gmxlib/cuda_tools/copyrite_gpu.cu		diff \| blob \| history
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