* To help us fund GROMACS development, we humbly ask that you cite
* the research papers on the package. Check out http://www.gromacs.org.
*/
-/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
#include "gromacs/commandline/pargs.h"
-#include "config.h"
-
#include <cstdlib>
#include <cstring>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <string.h>
#include <time.h>
#include "gromacs/fft/fft.h"
-#include "config.h"
-
#include <errno.h>
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <errno.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
#include <errno.h>
#include "confio.h"
-#include "config.h"
-
#include <errno.h>
#include <math.h>
#include <stdio.h>
#include "enxio.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
#include "filenm.h"
-#include "config.h"
-
#include <stdio.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <limits.h>
#include <math.h>
#include <stdio.h>
#include "matio.h"
-#include "config.h"
-
#include <ctype.h>
#include <stdio.h>
#include "mtxio.h"
-#include "config.h"
-
/* This module provides routines to read/write sparse or full storage
* matrices from/to files. It is normally used for the Hessian matrix
* in normal mode analysis.
#include "pdbio.h"
-#include "config.h"
-
#include <ctype.h>
#include <stdlib.h>
#include <string.h>
#include "strdb.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "gromacs/fileio/timecontrol.h"
-#include "config.h"
-
#include "thread_mpi/threads.h"
#include "gromacs/utility/basedefinitions.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
/* This file is completely threadsafe - keep it that way! */
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/utility/smalloc.h"
#include "gromacs/math/vec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/utility/smalloc.h"
#include "gromacs/utility/fatalerror.h"
#include "writeps.h"
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/utility/fatalerror.h"
#include "xdrf.h"
-#include "config.h"
-
#include "gromacs/math/vectypes.h"
#include "gromacs/utility/fatalerror.h"
#include "gromacs/utility/smalloc.h"
#include "xtcio.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/fileio/gmxfio.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/utility/fatalerror.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "cmat.h"
#include "gromacs/utility/smalloc.h"
#include "gromacs/legacyheaders/macros.h"
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "gmxpre.h"
-#include "config.h"
/* dens_filter.c
* Routines for Filters and convolutions
*/
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/topology/symtab.h"
#include "gromacs/utility/smalloc.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/utility/smalloc.h"
#include "gromacs/math/vec.h"
#include "eigio.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "fitahx.h"
#include "gromacs/math/vec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <float.h>
#include <math.h>
*/
#include "gmxpre.h"
-#include "config.h"
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <assert.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
#include <string.h>
#include <math.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/topology/index.h"
#include "gromacs/fileio/confio.h"
#include "gromacs/math/units.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
#include <string.h>
#include <math.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <ctype.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/utility/smalloc.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/macros.h"
#include "gromacs/fileio/confio.h"
#include "gromacs/legacyheaders/viewit.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/macros.h"
#include "gromacs/commandline/pargs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/macros.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/utility/smalloc.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
#include <math.h>
#include <string.h>
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/macros.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/macros.h"
#include "gstat.h"
#include "gromacs/math/vec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/macros.h"
#include "gstat.h"
#include "gromacs/legacyheaders/viewit.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <assert.h>
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/utility/smalloc.h"
#include "gromacs/fft/fft.h"
#include "gromacs/utility/fatalerror.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/math/vec.h"
#include "gromacs/utility/smalloc.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/utility/smalloc.h"
#include "gromacs/utility/futil.h"
#include "gromacs/math/utilities.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/math/vec.h"
#include "conformation-utilities.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/macros.h"
#include "gromacs/math/vec.h"
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <cuda.h>
#include <cuda_runtime_api.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <math.h>
#include "gromacs/math/utilities.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
-
#include "gromacs/bonded/bonded.h"
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/disre.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/macros.h"
#include "gromacs/legacyheaders/inputrec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdarg.h>
#include "gromacs/legacyheaders/types/commrec.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/names.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/math/vec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/types/simple.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/types/simple.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/types/simple.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
-
#include <stdio.h>
#include <string.h>
#ifndef _nb_kernel_h_
#define _nb_kernel_h_
-#include "config.h"
-
-
#ifdef __cplusplus
extern "C" {
#endif
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/types/commrec.h"
#include "gromacs/legacyheaders/network.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/network.h"
#include "gromacs/legacyheaders/rbin.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/splitter.h"
-#include "config.h"
-
#include <assert.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
/* This file is completely threadsafe - please keep it that way! */
#include <stdio.h>
#include "gromacs/legacyheaders/typedefs.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/legacyheaders/macros.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/utility/smalloc.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/utility/smalloc.h"
#include "addconf.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <assert.h>
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/macros.h"
#include "calch.h"
#include "gromacs/math/utilities.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <signal.h>
#include <stdlib.h>
#include "gromacs/legacyheaders/typedefs.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
#ifndef GMX_GMXPREPROCESS_FFLIBUTIL_H
#define GMX_GMXPREPROCESS_FFLIBUTIL_H
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/legacyheaders/typedefs.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/random/random.h"
#include "gromacs/utility/smalloc.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include <time.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <sys/types.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/macros.h"
#include "gpp_bond_atomtype.h"
#ifndef GMX_GMXPREPROCESS_GPP_BONDATOMTYPE_H
#define GMX_GMXPREPROCESS_GPP_BONDATOMTYPE_H
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/legacyheaders/typedefs.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
/* #define DEBUG_NNB */
#include "grompp.h"
-#include "config.h"
-
#include <sys/types.h>
#include <math.h>
#include <string.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include "hackblock.h"
#include "gromacs/utility/cstringutil.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <string.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "insert-molecules.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/math/utilities.h"
#include "gromacs/fileio/confio.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/math/utilities.h"
#include "pdb2gmx.h"
-#include "config.h"
-
#include <ctype.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <math.h>
#include <ctype.h>
#include "gmxpre.h"
-#include "config.h"
#include "gromacs/utility/cstringutil.h"
#include "pgutil.h"
#include <string.h>
#include "protonate.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/utility/cstringutil.h"
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <limits.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/math/vec.h"
#include "gromacs/utility/smalloc.h"
#include "readir.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <stdlib.h>
#include <string.h>
#include "solvate.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <string.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <math.h>
#include <stdlib.h>
#ifndef GMX_GMXPREPROCESS_TOMORSE_H
#define GMX_GMXPREPROCESS_TOMORSE_H
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdarg.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <assert.h>
#include <ctype.h>
#include <errno.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <assert.h>
#include <ctype.h>
#include <math.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <math.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <assert.h>
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <assert.h>
#include <math.h>
#include <stdio.h>
#include "x2top.h"
-#include "config.h"
-
#include <assert.h>
#include "gromacs/legacyheaders/copyrite.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <string.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/force.h"
#include "gromacs/legacyheaders/macros.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <assert.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
#include <assert.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/math/vec.h"
#include "gromacs/pbcutil/pbc.h"
#include "gmxpre.h"
-#include "config.h"
#include <assert.h>
#include "gromacs/math/vec.h"
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <assert.h>
#include "gromacs/legacyheaders/domdec.h"
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/legacyheaders/typedefs.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
#include "gromacs/utility/smalloc.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/types/simple.h"
#ifndef _GENBORN_ALLVSALL_H
#define _GENBORN_ALLVSALL_H
-#include "config.h"
-
#include "gromacs/legacyheaders/types/simple.h"
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/types/simple.h"
#ifndef _GENBORN_ALLVSALL_SSE2_DOUBLE_H
#define _GENBORN_ALLVSALL_SSE2_DOUBLE_H
-#include "config.h"
-
#include "gromacs/legacyheaders/types/simple.h"
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/types/simple.h"
#ifndef _GENBORN_ALLVSALL_SSE2_SINGLE_H
#define _GENBORN_ALLVSALL_SSE2_SINGLE_H
-#include "config.h"
-
#include "gromacs/legacyheaders/types/simple.h"
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
#ifndef _genborn_sse2_double_h
#define _genborn_sse2_double_h
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
int
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
#ifndef _genborn_sse_h
#define _genborn_sse_h
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
float
*/
#include "gmxpre.h"
-#include "config.h"
-
-
#include "groupcoord.h"
#include "gromacs/legacyheaders/network.h"
#include "gromacs/pbcutil/pbc.h"
* \inlibraryapi
*/
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/types/commrec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/fileio/tpxio.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/utility/fatalerror.h"
#include <algorithm>
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/mdrun.h"
#include "gromacs/legacyheaders/domdec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <float.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include <float.h>
#include <math.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/pbcutil/ishift.h"
#include "nbnxn_kernel_common.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/types/nlistheuristics.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/math/vec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/typedefs.h"
#include "gromacs/legacyheaders/force.h"
#include "gromacs/legacyheaders/names.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include <stdio.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/math/utilities.h"
#include "gromacs/legacyheaders/typedefs.h"
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
-
#include <math.h>
#include "gromacs/legacyheaders/macros.h"
#include "gromacs/utility/smalloc.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
-
#include <stdio.h>
#include <math.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include "gromacs/legacyheaders/macros.h"
#include "gromacs/legacyheaders/vcm.h"
#include "gromacs/math/vec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/legacyheaders/typedefs.h"
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <string.h>
#include "gromacs/legacyheaders/force.h"
#include "gromacs/pbcutil/mshift.h"
-#include "config.h"
-
#include <string.h>
#include <algorithm>
#include "gromacs/pbcutil/pbc.h"
-#include "config.h"
-
#include <assert.h>
#include <math.h>
#include "gromacs/pbcutil/rmpbc.h"
-#include "config.h"
-
#include "gromacs/fileio/trx.h"
#include "gromacs/math/vec.h"
#include "gromacs/pbcutil/mshift.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include "gromacs/utility/futil.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "testutils/testoptions.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
/*! \internal \file
* \brief
* Separate test of SIMD load/store, before we use them in the SIMD test classes.
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "simd.h"
namespace gmx
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "simd4.h"
namespace gmx
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/math/utilities.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/simd/simd.h"
#include "gromacs/simd/vector_operations.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/math/utilities.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include "simd.h"
/* Some notes on the setup of these tests:
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/simd/simd.h"
#include "gromacs/simd/vector_operations.h"
#include "statistics.h"
-#include "config.h"
#include <math.h>
#include "gromacs/math/vec.h"
#include "statistics.h"
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/math/vec.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <string.h>
/* This file is completely threadsafe - keep it that way! */
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdio.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include "gromacs/legacyheaders/types/inputrec.h"
#include "gromacs/topology/atomprop.h"
-#include "config.h"
-
#include <ctype.h>
#include <string.h>
#include "gromacs/topology/index.h"
-#include "config.h"
-
#include <assert.h>
#include <ctype.h>
#include <stdlib.h>
#include "gromacs/topology/mtop_util.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
#include "symtab.h"
-#include "config.h"
-
#include <stdio.h>
#include <string.h>
#include "gromacs/topology/topsort.h"
-#include "config.h"
-
#include <stdio.h>
#include "gromacs/legacyheaders/types/ifunc.h"
#include "cmdlinerunner.h"
-#include "config.h"
-
#include "gromacs/analysisdata/paralleloptions.h"
#include "gromacs/commandline/cmdlinehelpcontext.h"
#include "gromacs/commandline/cmdlinehelpwriter.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include "runnercommon.h"
-#include "config.h"
-
#include <string.h>
#include "gromacs/legacyheaders/oenv.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <signal.h>
#include <stdlib.h>
#include "gromacs/legacyheaders/typedefs.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include <algorithm>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include "gromacs/legacyheaders/macros.h"
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include <algorithm>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <math.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <string.h>
#include <algorithm>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <ctype.h>
#include <stdio.h>
#include <stdlib.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
*/
#include "gmxpre.h"
-#include "config.h"
-
#include <stdio.h>
#include <stdlib.h>
#include <string.h>