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Include directive sorter
2014-09-11 Teemu MurtolaInclude directive sorter
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2014-09-11 Teemu MurtolaAdd gmx_getpid()
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2014-09-11 Teemu MurtolaMove _GNU_SOURCE to gmxpre.h
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2014-09-11 Teemu MurtolaSort includes outside src/gromacs
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2014-09-11 Teemu MurtolaSort all includes in src/gromacs
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2014-09-11 Teemu MurtolaUse absolute include paths in nbnxn kernels
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2014-09-11 Teemu MurtolaManually sort some includes in src/gromacs
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2014-09-08 Teemu MurtolaSupport custom default extension for FileNameOption
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2014-09-08 Teemu MurtolaRemove unnecessary extensions in t_filenm defaults
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2014-09-07 Teemu MurtolaMore consistent default handling for StringOption
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2014-09-07 Teemu MurtolaUpdate template/README
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2014-09-05 Teemu MurtolaRemove unnecessary config.h includes
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2014-09-05 Teemu MurtolaMove some defines to gmxpre.h for thread-MPI
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2014-09-05 Teemu MurtolaAnother batch of added config.h
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2014-09-05 Teemu MurtolaMake doc-check fail the build on warnings
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2014-09-05 Teemu MurtolaMerge "Merge release-5-0 into master"
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2014-09-04 Teemu MurtolaInclude config.h directly if used
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2014-09-04 Teemu MurtolaMake doc-check silent for in-source build
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2014-09-04 Teemu MurtolaMerge "Merge release-5-0 into master"
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2014-08-24 Teemu MurtolaPrecalculate pbc shift for analysis nbsearch
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2014-08-24 Teemu MurtolaImprove analysis nbsearch grid mapping
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2014-08-23 Teemu MurtolaBackport of 'Remove unused figures from share/html/'
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2014-08-22 Teemu MurtolaMove -nice handling to CommandLineModuleManager
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2014-08-20 Teemu MurtolaMisc. gmxpre.h-related changes
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2014-08-20 Teemu MurtolaMerge release-5-0 into master
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2014-08-20 Teemu MurtolaRemove unused config.h defines
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2014-08-19 Teemu MurtolaIntroduce gmxpre.h for truly global definitions
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2014-08-16 Teemu MurtolaDisable analysisdata generic tests if not compilable
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2014-08-14 Teemu MurtolaFix CMake package config after recent version changes
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2014-08-13 Teemu MurtolaUse native CMake mechanism for find_package(GROMACS)
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2014-08-13 Teemu MurtolaReorganize CMake version information management
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2014-08-10 Teemu MurtolaImprove initAfterFirstFrame() usability
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2014-08-10 Teemu MurtolaMake vec.h const-correct with both C and C++
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2014-08-10 Teemu MurtolaBasic exclusion support for analysis nbsearch
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2014-08-09 Teemu MurtolaAdd Selection::hasOnlyAtoms()
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2014-08-07 Teemu MurtolaBasic support for 2D neighborhood search for analysis
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2014-08-04 Teemu MurtolaVerify MD5 sum for FFTW download
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2014-08-03 Teemu MurtolaCheck frame atom count before evaluating selections
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2014-07-31 Teemu MurtolaMerge "Merge release-5-0 into master"
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2014-07-24 Teemu MurtolaDo not actually install uniqueptr.h
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2014-07-16 Teemu MurtolaFix HTML help and man pages for commands with dashes
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2014-07-12 Teemu MurtolaMake gmx_node_num/rank safer
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2014-07-11 Teemu MurtolaFix HTML links that contain file extensions
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2014-07-10 Teemu MurtolaBump SOVERSION
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2014-07-09 Teemu MurtolaClean up gmx_header_config
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2014-07-09 Teemu MurtolaMerge release-5-0 into master
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2014-07-09 Teemu MurtolaImprove module dependency graph layout
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2014-07-09 Teemu MurtolaModule dependency cycle checker for 'doc-check'
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2014-07-08 Teemu MurtolaRemove PCA_QUIET
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2014-07-08 Teemu MurtolaAdditional index group checks for selections
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2014-07-08 Teemu MurtolaClean up program name handling in oenv
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2014-07-08 Teemu MurtolaImprove FileNameOption error handling
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2014-07-08 Teemu MurtolaMove GMX_CXX11 to config.h
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2014-07-08 Teemu MurtolaRemove gmx_unique_ptr from options public headers
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2014-07-08 Teemu MurtolaMake selections ignore \r in input
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2014-07-08 Teemu MurtolaRemove selection help from SelectionCollection
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2014-07-08 Teemu MurtolaChange some gmx_unique_ptr to shared_ptr in public...
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2014-07-08 Teemu MurtolaMove -debug to cmdlinemodulemanager.cpp
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2014-07-08 Teemu MurtolaMake doc-check pass again without warnings
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2014-07-05 Teemu MurtolaMerge release-5-0 into master
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2014-07-05 Teemu MurtolaReinstantiate unsorted index group check
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2014-07-05 Teemu MurtolaUpdate some installation-related docs
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2014-07-01 Teemu MurtolaAdjust include directory order for some corner cases
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2014-06-30 Teemu MurtolaMerge release-5-0 into master
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2014-06-29 Teemu MurtolaRemove some hardcoded selection string buffers
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2014-06-28 Teemu MurtolaRemove overeager selection index group check
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2014-06-21 Teemu MurtolaConvert checkpoint.c to C++ compilation
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2014-06-15 Teemu MurtolaConvert gmx_residuetype_t to a non-pointer
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2014-06-15 Teemu MurtolaRemove unused figures from share/html/
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2014-06-07 Teemu MurtolaClean up FileNameOptionStorage implementation
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2014-06-07 Teemu MurtolaImprove (Selection|FileName)OptionManager handling
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2014-06-07 Teemu MurtolaReplace all command line parsing with Options
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2014-06-07 Teemu MurtolaMove residuetype handling to its own file.
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2014-06-07 Teemu MurtolaRemove support for "old" index file format
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2014-06-07 Teemu MurtolaMove index.* to topology/
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2014-06-02 Teemu MurtolaMove atomprop.* to topology/
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2014-05-31 Teemu MurtolaMove mtop_util.* and topsort.* to topology/
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2014-05-29 Teemu MurtolaRemove more uses of typedefs.h
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2014-05-25 Teemu MurtolaMove general functions out of typedefs.h
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2014-05-25 Teemu MurtolaRemove some typedefs.h dependencies
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2014-05-25 Teemu MurtolaMove types/topology.h to topology/
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2014-05-24 Teemu MurtolaMove types/idef.h to topology/
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2014-05-24 Teemu MurtolaMove types/atoms.h to topology/
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2014-05-24 Teemu MurtolaMove types/ishift.h to pbcutil/
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2014-05-24 Teemu MurtolaMove invblock.* to topology/
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2014-05-24 Teemu MurtolaMove types/block.h to topology/
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2014-05-24 Teemu MurtolaMove symtab.* to topology/
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2014-05-24 Teemu MurtolaMerge t_symtab into symtab.h
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2014-05-24 Teemu MurtolaMove pbc.* to pbcutil/
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2014-05-22 Teemu MurtolaMove cinvsqrtdata.c to math/ and remove Fortran remnants
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2014-05-22 Teemu MurtolaFix static group list indices in selection prompt
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2014-05-22 Teemu MurtolaMerge t_pbc definition into pbc.h
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2014-05-21 Teemu MurtolaMove mshift.* to pbcutil/
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2014-05-21 Teemu MurtolaMerge t_graph definition into mshift.h
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2014-05-20 Teemu MurtolaMove rmpbc.* to pbcutil/
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2014-05-18 Teemu MurtolaClean up matio.*
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2014-05-18 Teemu MurtolaMove 3dview.* to programs/view/
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2014-05-18 Teemu MurtolaClean up math/
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2014-05-17 Teemu MurtolaMore elaborate default handling for FileNameOption
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2014-05-17 Teemu MurtolaUnit tests for parse_common_args() file options
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