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2015-04-24	Teemu Murtola	Add section on naming conventions to dev manual	commit \| commitdiff \| tree
2015-02-13	Teemu Murtola	Replace some [BR] in help texts with rst literals	commit \| commitdiff \| tree
2015-01-24	Teemu Murtola	Remove old selection parser error handling code	commit \| commitdiff \| tree
2015-01-07	Teemu Murtola	Custom program context for unit tests	commit \| commitdiff \| tree
2015-01-06	Teemu Murtola	Use xvgrclose() for files opened with xvgropen()	commit \| commitdiff \| tree
2015-01-02	Teemu Murtola	Update copyright year in copyrite.cpp	commit \| commitdiff \| tree
2014-12-28	Teemu Murtola	Convert gmx-insert-molecules into proper C++ module	commit \| commitdiff \| tree
2014-12-18	Teemu Murtola	Rework gmx-solvate to use analysis nbsearch	commit \| commitdiff \| tree
2014-12-14	Teemu Murtola	C++ interface for surface area calculation	commit \| commitdiff \| tree
2014-11-27	Teemu Murtola	Clean up gmx solvate	commit \| commitdiff \| tree
2014-11-27	Teemu Murtola	More control over file backups	commit \| commitdiff \| tree
2014-11-26	Teemu Murtola	Convert surface area calculation to C++	commit \| commitdiff \| tree
2014-11-21	Teemu Murtola	Describe doc-check in developer manual	commit \| commitdiff \| tree
2014-10-30	Teemu Murtola	Add more selection unit tests	commit \| commitdiff \| tree
2014-10-30	Teemu Murtola	Fix more memory leaks in default group creation	commit \| commitdiff \| tree
2014-10-29	Teemu Murtola	Merge release-5-0 into master	commit \| commitdiff \| tree
2014-10-28	Teemu Murtola	Avoid common.h inclusion in CUDA code	commit \| commitdiff \| tree
2014-10-23	Teemu Murtola	Move truncate() wrapper to futil.h	commit \| commitdiff \| tree
2014-10-23	Teemu Murtola	Encapsulate use of nice()	commit \| commitdiff \| tree
2014-10-22	Teemu Murtola	Collect more platform-specific code to sysinfo.h	commit \| commitdiff \| tree
2014-10-22	Teemu Murtola	Rename common.h to classhelpers.h	commit \| commitdiff \| tree
2014-10-14	Teemu Murtola	Check config.h usage in doc-check	commit \| commitdiff \| tree
2014-09-21	Teemu Murtola	Introduce a variable to identify in-source build	commit \| commitdiff \| tree
2014-09-21	Teemu Murtola	Skip man/html/completion generation if not needed	commit \| commitdiff \| tree
2014-09-13	Teemu Murtola	Extend support for float/double tolerances in testing	commit \| commitdiff \| tree
2014-09-12	Teemu Murtola	Run include order check in doc-check	commit \| commitdiff \| tree
2014-09-05	Teemu Murtola	Remove unnecessary config.h includes	commit \| commitdiff \| tree
2014-09-05	Teemu Murtola	Move some defines to gmxpre.h for thread-MPI	commit \| commitdiff \| tree
2014-09-04	Teemu Murtola	Include config.h directly if used	commit \| commitdiff \| tree
2014-08-23	Mark Abraham	Generalize markdown configuration machinery	commit \| commitdiff \| tree
2014-08-22	Teemu Murtola	Move -nice handling to CommandLineModuleManager	commit \| commitdiff \| tree
2014-08-20	Teemu Murtola	Misc. gmxpre.h-related changes	commit \| commitdiff \| tree
2014-08-20	Teemu Murtola	Merge release-5-0 into master	commit \| commitdiff \| tree
2014-08-20	Teemu Murtola	Remove unused config.h defines	commit \| commitdiff \| tree
2014-08-19	Teemu Murtola	Introduce gmxpre.h for truly global definitions	commit \| commitdiff \| tree
2014-08-14	Teemu Murtola	Fix CMake package config after recent version changes	commit \| commitdiff \| tree
2014-08-10	Teemu Murtola	Improve initAfterFirstFrame() usability	commit \| commitdiff \| tree
2014-08-10	Teemu Murtola	Make vec.h const-correct with both C and C++	commit \| commitdiff \| tree
2014-08-10	Teemu Murtola	Basic exclusion support for analysis nbsearch	commit \| commitdiff \| tree
2014-08-10	Roland Schulz	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-08-09	Teemu Murtola	Add Selection::hasOnlyAtoms()	commit \| commitdiff \| tree
2014-08-07	Teemu Murtola	Basic support for 2D neighborhood search for analysis	commit \| commitdiff \| tree
2014-08-04	Teemu Murtola	Verify MD5 sum for FFTW download	commit \| commitdiff \| tree
2014-08-03	Teemu Murtola	Check frame atom count before evaluating selections	commit \| commitdiff \| tree
2014-07-24	Teemu Murtola	Do not actually install uniqueptr.h	commit \| commitdiff \| tree
2014-07-10	Teemu Murtola	Bump SOVERSION	commit \| commitdiff \| tree
2014-07-09	Teemu Murtola	Clean up gmx_header_config	commit \| commitdiff \| tree
2014-07-09	Teemu Murtola	Merge release-5-0 into master	commit \| commitdiff \| tree
2014-07-09	Teemu Murtola	Improve module dependency graph layout	commit \| commitdiff \| tree
2014-07-08	Teemu Murtola	Move GMX_CXX11 to config.h	commit \| commitdiff \| tree
2014-07-08	Teemu Murtola	Remove gmx_unique_ptr from options public headers	commit \| commitdiff \| tree
2014-07-08	Teemu Murtola	Remove selection help from SelectionCollection	commit \| commitdiff \| tree
2014-07-08	Teemu Murtola	Make doc-check pass again without warnings	commit \| commitdiff \| tree
2014-07-05	Teemu Murtola	Merge release-5-0 into master	commit \| commitdiff \| tree
2014-06-30	Teemu Murtola	Merge release-5-0 into master	commit \| commitdiff \| tree
2014-06-28	Teemu Murtola	Remove overeager selection index group check	commit \| commitdiff \| tree
2014-06-21	Teemu Murtola	Convert checkpoint.c to C++ compilation	commit \| commitdiff \| tree
2014-06-07	Teemu Murtola	Clean up FileNameOptionStorage implementation	commit \| commitdiff \| tree
2014-06-07	Teemu Murtola	Move index.* to topology/	commit \| commitdiff \| tree
2014-06-03	Mark Abraham	Convert repl_ex.c to C++	commit \| commitdiff \| tree
2014-06-02	Teemu Murtola	Move atomprop.* to topology/	commit \| commitdiff \| tree
2014-05-31	Teemu Murtola	Move mtop_util.* and topsort.* to topology/	commit \| commitdiff \| tree
2014-05-29	Teemu Murtola	Remove more uses of typedefs.h	commit \| commitdiff \| tree
2014-05-25	Teemu Murtola	Move general functions out of typedefs.h	commit \| commitdiff \| tree
2014-05-25	Teemu Murtola	Remove some typedefs.h dependencies	commit \| commitdiff \| tree
2014-05-25	Teemu Murtola	Move types/topology.h to topology/	commit \| commitdiff \| tree
2014-05-24	Teemu Murtola	Move types/idef.h to topology/	commit \| commitdiff \| tree
2014-05-21	Teemu Murtola	Move mshift.* to pbcutil/	commit \| commitdiff \| tree
2014-05-21	Teemu Murtola	Merge t_graph definition into mshift.h	commit \| commitdiff \| tree
2014-05-18	Teemu Murtola	Clean up matio.*	commit \| commitdiff \| tree
2014-05-17	Teemu Murtola	More elaborate default handling for FileNameOption	commit \| commitdiff \| tree
2014-05-01	Teemu Murtola	Fix incorrect limits in FloatOptionStorage	commit \| commitdiff \| tree
2014-04-27	Teemu Murtola	Move 'real' definition to utility/real.h	commit \| commitdiff \| tree
2014-04-16	Teemu Murtola	Remove unused minvert.h	commit \| commitdiff \| tree
2014-04-13	Teemu Murtola	Remove unused shift.h	commit \| commitdiff \| tree
2014-04-08	Teemu Murtola	Version bump for post-5.0 development	commit \| commitdiff \| tree
2014-04-04	Teemu Murtola	Remove ancient SGI-specific code	commit \| commitdiff \| tree
2014-04-04	Teemu Murtola	Clean up gmx_fatal.*	commit \| commitdiff \| tree
2014-03-30	Teemu Murtola	Clean up string2.h-related includes	commit \| commitdiff \| tree
2014-03-27	Teemu Murtola	Move include dependency checks to doc-check	commit \| commitdiff \| tree
2014-03-27	Teemu Murtola	Better automated Doxygen documentation checker	commit \| commitdiff \| tree
2014-03-27	Teemu Murtola	Misc. Doxygen fixes	commit \| commitdiff \| tree
2014-03-27	Teemu Murtola	Move thread_mpi to src/external/	commit \| commitdiff \| tree
2014-03-24	Teemu Murtola	Remove gmxpreprocess from include path	commit \| commitdiff \| tree
2014-03-08	Teemu Murtola	Remove some unnecessary declarations	commit \| commitdiff \| tree
2014-02-28	Teemu Murtola	Residual SIMD Doxygen improvements	commit \| commitdiff \| tree
2014-02-28	Teemu Murtola	Misc. Doxygen configuration changes	commit \| commitdiff \| tree
2014-02-26	Teemu Murtola	Fix GMX_PRIu32 and GMX_PRIu64 for MSVC	commit \| commitdiff \| tree
2014-02-25	Mark Abraham	Keep compilers happy on BG/Q	commit \| commitdiff \| tree
2014-02-15	Teemu Murtola	Fix some broken links in HTML pages	commit \| commitdiff \| tree
2014-02-09	Teemu Murtola	Shell completions through Options	commit \| commitdiff \| tree
2014-02-03	Mark Abraham	Add hack to fix genbox	commit \| commitdiff \| tree
2014-02-02	Teemu Murtola	Extend valgrind suppressions for OpenMPI	commit \| commitdiff \| tree
2014-01-30	Teemu Murtola	Overview docs for using Gromacs as a library	commit \| commitdiff \| tree
2014-01-30	Teemu Murtola	Rename ProgramInfo to CommandLineProgramContext	commit \| commitdiff \| tree
2014-01-29	Teemu Murtola	Print common options to 'gmx -h'	commit \| commitdiff \| tree
2014-01-22	Teemu Murtola	Use local ProgramInfo in CommandLineModuleManager	commit \| commitdiff \| tree
2014-01-21	Teemu Murtola	Remove unused split.h	commit \| commitdiff \| tree
2014-01-20	Teemu Murtola	Fix test reference data	commit \| commitdiff \| tree
2014-01-05	Teemu Murtola	Support for default values for SelectionOption	commit \| commitdiff \| tree
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