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Bump SOVERSION
2014-07-10 Teemu MurtolaBump SOVERSION
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2014-07-09 Teemu MurtolaClean up gmx_header_config
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2014-07-09 Teemu MurtolaMerge release-5-0 into master
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2014-07-09 Teemu MurtolaImprove module dependency graph layout
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2014-07-09 Teemu MurtolaModule dependency cycle checker for 'doc-check'
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2014-07-08 Teemu MurtolaRemove PCA_QUIET
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2014-07-08 Teemu MurtolaAdditional index group checks for selections
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2014-07-08 Teemu MurtolaClean up program name handling in oenv
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2014-07-08 Teemu MurtolaImprove FileNameOption error handling
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2014-07-08 Teemu MurtolaMove GMX_CXX11 to config.h
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2014-07-08 Teemu MurtolaRemove gmx_unique_ptr from options public headers
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2014-07-08 Teemu MurtolaMake selections ignore \r in input
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2014-07-08 Teemu MurtolaRemove selection help from SelectionCollection
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2014-07-08 Teemu MurtolaChange some gmx_unique_ptr to shared_ptr in public...
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2014-07-08 Teemu MurtolaMove -debug to cmdlinemodulemanager.cpp
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2014-07-08 Teemu MurtolaMake doc-check pass again without warnings
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2014-07-05 Teemu MurtolaMerge release-5-0 into master
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2014-07-05 Teemu MurtolaReinstantiate unsorted index group check
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2014-07-05 Teemu MurtolaUpdate some installation-related docs
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2014-07-01 Teemu MurtolaAdjust include directory order for some corner cases
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2014-06-30 Teemu MurtolaMerge release-5-0 into master
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2014-06-29 Teemu MurtolaRemove some hardcoded selection string buffers
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2014-06-28 Teemu MurtolaRemove overeager selection index group check
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2014-06-21 Teemu MurtolaConvert checkpoint.c to C++ compilation
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2014-06-15 Teemu MurtolaConvert gmx_residuetype_t to a non-pointer
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2014-06-15 Teemu MurtolaRemove unused figures from share/html/
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2014-06-07 Teemu MurtolaClean up FileNameOptionStorage implementation
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2014-06-07 Teemu MurtolaImprove (Selection|FileName)OptionManager handling
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2014-06-07 Teemu MurtolaReplace all command line parsing with Options
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2014-06-07 Teemu MurtolaMove residuetype handling to its own file.
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2014-06-07 Teemu MurtolaRemove support for "old" index file format
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2014-06-07 Teemu MurtolaMove index.* to topology/
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2014-06-02 Teemu MurtolaMove atomprop.* to topology/
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2014-05-31 Teemu MurtolaMove mtop_util.* and topsort.* to topology/
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2014-05-29 Teemu MurtolaRemove more uses of typedefs.h
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2014-05-25 Teemu MurtolaMove general functions out of typedefs.h
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2014-05-25 Teemu MurtolaRemove some typedefs.h dependencies
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2014-05-25 Teemu MurtolaMove types/topology.h to topology/
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2014-05-24 Teemu MurtolaMove types/idef.h to topology/
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2014-05-24 Teemu MurtolaMove types/atoms.h to topology/
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2014-05-24 Teemu MurtolaMove types/ishift.h to pbcutil/
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2014-05-24 Teemu MurtolaMove invblock.* to topology/
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2014-05-24 Teemu MurtolaMove types/block.h to topology/
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2014-05-24 Teemu MurtolaMove symtab.* to topology/
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2014-05-24 Teemu MurtolaMerge t_symtab into symtab.h
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2014-05-24 Teemu MurtolaMove pbc.* to pbcutil/
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2014-05-22 Teemu MurtolaMove cinvsqrtdata.c to math/ and remove Fortran remnants
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2014-05-22 Teemu MurtolaFix static group list indices in selection prompt
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2014-05-22 Teemu MurtolaMerge t_pbc definition into pbc.h
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2014-05-21 Teemu MurtolaMove mshift.* to pbcutil/
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2014-05-21 Teemu MurtolaMerge t_graph definition into mshift.h
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2014-05-20 Teemu MurtolaMove rmpbc.* to pbcutil/
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2014-05-18 Teemu MurtolaClean up matio.*
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2014-05-18 Teemu MurtolaMove 3dview.* to programs/view/
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2014-05-18 Teemu MurtolaClean up math/
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2014-05-17 Teemu MurtolaMore elaborate default handling for FileNameOption
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2014-05-17 Teemu MurtolaUnit tests for parse_common_args() file options
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2014-05-14 Teemu MurtolaMove physics.* to math/units.*
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2014-05-01 Teemu MurtolaFix incorrect limits in FloatOptionStorage
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2014-04-28 Teemu MurtolaMove mtxio.* to fileio/
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2014-04-27 Teemu MurtolaMove rvec and friends to math/vectypes.h
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2014-04-27 Teemu MurtolaMove 'real' definition to utility/real.h
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2014-04-17 Teemu MurtolaMove vec.h to math/
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2014-04-16 Teemu MurtolaRemove unused minvert.h
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2014-04-16 Teemu MurtolaFix typo in fatalerror.h
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2014-04-16 Teemu MurtolaMove xvgr.* to fileio/
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2014-04-16 Teemu MurtolaClean up xvgr.h and viewit.h usage
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2014-04-16 Teemu MurtolaRemove sysstuff.h
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2014-04-16 Teemu MurtolaRemove sysstuff.h includes from headers
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2014-04-16 Teemu MurtolaRefactor gmx_fatal()
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2014-04-13 Teemu MurtolaRemove unused shift.h
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2014-04-13 Teemu MurtolaRemove utility -> fileio dependencies
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2014-04-13 Teemu MurtolaClean up futil.*
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2014-04-10 Teemu MurtolaClean up and fix issues in doc-check scripts
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2014-04-10 Teemu MurtolaMove part of types/simple.h to utility/
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2014-04-10 Teemu MurtolaRemove utility/ dependencies on network.h and main.h
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2014-04-08 Teemu MurtolaRemove some utility -> legacyheaders dependencies
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2014-04-08 Teemu MurtolaVersion bump for post-5.0 development
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2014-04-08 Teemu MurtolaMove gmx_fatal.* to utility/fatalerror.*
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2014-04-07 Teemu MurtolaDoxygen documentation for version.h
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2014-04-04 Teemu MurtolaRemove ancient SGI-specific code
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2014-04-04 Teemu MurtolaClean up gmx_fatal.*
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2014-04-02 Teemu MurtolaMove string2.* to utility/cstringutil.*
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2014-04-01 Teemu MurtolaMove smalloc.h to utility/
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2014-03-31 Teemu MurtolaRemove #include <...> for local files in gmx-view
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2014-03-31 Teemu MurtolaClean up smalloc.h
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2014-03-31 Teemu MurtolaMove some math headers away from legacyheaders/
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2014-03-31 Teemu MurtolaRemove dependency on commandline/ from oenv.cpp
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2014-03-30 Teemu MurtolaClean up string2.h-related includes
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2014-03-29 Teemu MurtolaOptimize intermodule dependencies
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2014-03-29 Teemu MurtolaImprove version information handling
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2014-03-29 Teemu MurtolaBetter include dependency graph generator
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2014-03-27 Teemu MurtolaMove include dependency checks to doc-check
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2014-03-27 Teemu MurtolaBetter automated Doxygen documentation checker
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2014-03-27 Teemu MurtolaMisc. Doxygen fixes
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2014-03-27 Teemu MurtolaMove thread_mpi to src/external/
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2014-03-24 Teemu MurtolaRemove gmxpreprocess from include path
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2014-03-18 Teemu MurtolaRemove interactive help from core selection parser
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2014-03-18 Teemu MurtolaImprove interactive selection input
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2014-03-17 Teemu MurtolaUpdate manual analysis section
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