BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Teemu Murtola <teemu.murtola@gmail.com>
	Tue, 22 Apr 2014 04:14:58 +0000 (07:14 +0300)
committer	Gerrit Code Review <gerrit@gerrit.gromacs.org>
	Wed, 14 May 2014 19:33:30 +0000 (21:33 +0200)
commit	604cd696c0fe387f44745c6aa7152f36b9c6406c
tree	b79dad34b850f66c087e7d4603bbd913d344641a	tree \| snapshot
parent	2b4104a7c4e202d632a4d717a135845897284291	commit \| diff

Move physics.* to math/units.*

- Remove some unnecessary #includes.
- Remove the dummy tests; easy to rewrite as usable tests using GTest if
  someone needs those.  They were anyways testing code that no one is
  still calling, even though it was introduced several years ago.
  Now gmxlib is free of *_test.c files.

Now, only one file using atom_id is keeping math/ dependent on
legacyheaders/.

Part of #1415.

Change-Id: I31312b92cf9f5d5129fbd90f31fcf27be2f7afaf

113 files changed:

src/contrib/ehanal.c		diff \| blob \| history
src/contrib/ehdata.c		diff \| blob \| history
src/contrib/ehole.c		diff \| blob \| history
src/contrib/g_anavel.c		diff \| blob \| history
src/contrib/hexamer.c		diff \| blob \| history
src/contrib/mkice.c		diff \| blob \| history
src/contrib/test.c		diff \| blob \| history
src/contrib/testlr.c		diff \| blob \| history
src/gromacs/essentialdynamics/edsam.c		diff \| blob \| history
src/gromacs/fileio/pdbio.c		diff \| blob \| history
src/gromacs/fileio/tngio.cpp		diff \| blob \| history
src/gromacs/fileio/tngio_for_tools.cpp		diff \| blob \| history
src/gromacs/gmxana/anadih.c		diff \| blob \| history
src/gromacs/gmxana/autocorr.c		diff \| blob \| history
src/gromacs/gmxana/gmx_anaeig.c		diff \| blob \| history
src/gromacs/gmxana/gmx_angle.c		diff \| blob \| history
src/gromacs/gmxana/gmx_bar.c		diff \| blob \| history
src/gromacs/gmxana/gmx_bundle.c		diff \| blob \| history
src/gromacs/gmxana/gmx_chi.c		diff \| blob \| history
src/gromacs/gmxana/gmx_clustsize.c		diff \| blob \| history
src/gromacs/gmxana/gmx_covar.c		diff \| blob \| history
src/gromacs/gmxana/gmx_current.c		diff \| blob \| history
src/gromacs/gmxana/gmx_density.c		diff \| blob \| history
src/gromacs/gmxana/gmx_densorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dipoles.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dos.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dyndom.c		diff \| blob \| history
src/gromacs/gmxana/gmx_editconf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_enemat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_energy.c		diff \| blob \| history
src/gromacs/gmxana/gmx_hbond.c		diff \| blob \| history
src/gromacs/gmxana/gmx_helix.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmeig.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmens.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmtraj.c		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_polystat.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rama.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rdf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_rotacf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_saxs.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sham.c		diff \| blob \| history
src/gromacs/gmxana/gmx_sigeps.c		diff \| blob \| history
src/gromacs/gmxana/gmx_spol.c		diff \| blob \| history
src/gromacs/gmxana/gmx_tcaf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_traj.c		diff \| blob \| history
src/gromacs/gmxana/gmx_velacc.c		diff \| blob \| history
src/gromacs/gmxana/gmx_wheel.c		diff \| blob \| history
src/gromacs/gmxana/hxprops.c		diff \| blob \| history
src/gromacs/gmxana/pp2shift.c		diff \| blob \| history
src/gromacs/gmxlib/CMakeLists.txt		diff \| blob \| history
src/gromacs/gmxlib/bondfree.c		diff \| blob \| history
src/gromacs/gmxlib/calch.c		diff \| blob \| history
src/gromacs/gmxlib/ewald_util.c		diff \| blob \| history
src/gromacs/gmxlib/nonbonded/nonbonded.c		diff \| blob \| history
src/gromacs/gmxlib/physics_test.c	[deleted file]	blob \| history
src/gromacs/gmxlib/restcbt.c		diff \| blob \| history
src/gromacs/gmxpreprocess/calc_verletbuf.c		diff \| blob \| history
src/gromacs/gmxpreprocess/convparm.c		diff \| blob \| history
src/gromacs/gmxpreprocess/gen_maxwell_velocities.c		diff \| blob \| history
src/gromacs/gmxpreprocess/gen_vsite.c		diff \| blob \| history
src/gromacs/gmxpreprocess/genhydro.c		diff \| blob \| history
src/gromacs/gmxpreprocess/hizzie.c		diff \| blob \| history
src/gromacs/gmxpreprocess/nm2type.c		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2gmx.c		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2top.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/readir.c		diff \| blob \| history
src/gromacs/gmxpreprocess/topio.c		diff \| blob \| history
src/gromacs/gmxpreprocess/topshake.c		diff \| blob \| history
src/gromacs/gmxpreprocess/vsite_parm.c		diff \| blob \| history
src/gromacs/gmxpreprocess/x2top.c		diff \| blob \| history
src/gromacs/math/3dview.c		diff \| blob \| history
src/gromacs/math/CMakeLists.txt		diff \| blob \| history
src/gromacs/math/units.c	[moved from src/gromacs/gmxlib/physics.c with 94% similarity]	diff \| blob \| history
src/gromacs/math/units.h	[moved from src/gromacs/legacyheaders/physics.h with 98% similarity]	diff \| blob \| history
src/gromacs/math/vec.h		diff \| blob \| history
src/gromacs/mdlib/calcmu.c		diff \| blob \| history
src/gromacs/mdlib/clincs.c		diff \| blob \| history
src/gromacs/mdlib/constr.c		diff \| blob \| history
src/gromacs/mdlib/coupling.c		diff \| blob \| history
src/gromacs/mdlib/domdec_setup.c		diff \| blob \| history
src/gromacs/mdlib/ebin.c		diff \| blob \| history
src/gromacs/mdlib/ewald.c		diff \| blob \| history
src/gromacs/mdlib/expanded.c		diff \| blob \| history
src/gromacs/mdlib/force.c		diff \| blob \| history
src/gromacs/mdlib/forcerec.c		diff \| blob \| history
src/gromacs/mdlib/genborn.c		diff \| blob \| history
src/gromacs/mdlib/genborn_allvsall.c		diff \| blob \| history
src/gromacs/mdlib/genborn_allvsall_sse2_double.c		diff \| blob \| history
src/gromacs/mdlib/genborn_allvsall_sse2_single.c		diff \| blob \| history
src/gromacs/mdlib/genborn_sse2_double.c		diff \| blob \| history
src/gromacs/mdlib/genborn_sse2_single.c		diff \| blob \| history
src/gromacs/mdlib/mdebin.c		diff \| blob \| history
src/gromacs/mdlib/perf_est.c		diff \| blob \| history
src/gromacs/mdlib/pme.c		diff \| blob \| history
src/gromacs/mdlib/qm_gamess.c		diff \| blob \| history
src/gromacs/mdlib/qm_gaussian.c		diff \| blob \| history
src/gromacs/mdlib/qm_mopac.c		diff \| blob \| history
src/gromacs/mdlib/qm_orca.c		diff \| blob \| history
src/gromacs/mdlib/qmmm.c		diff \| blob \| history
src/gromacs/mdlib/rf_util.c		diff \| blob \| history
src/gromacs/mdlib/shellfc.c		diff \| blob \| history
src/gromacs/mdlib/sim_util.c		diff \| blob \| history
src/gromacs/mdlib/stat.c		diff \| blob \| history
src/gromacs/mdlib/tables.c		diff \| blob \| history
src/gromacs/mdlib/tpi.c		diff \| blob \| history
src/gromacs/mdlib/update.c		diff \| blob \| history
src/gromacs/selection/sm_insolidangle.cpp		diff \| blob \| history
src/gromacs/tools/check.c		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/sasa.cpp		diff \| blob \| history
src/programs/mdrun/md.c		diff \| blob \| history
src/programs/mdrun/membed.c		diff \| blob \| history
src/programs/mdrun/repl_ex.c		diff \| blob \| history

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