Move vec.h to math/

Most of the changes are scripted replacement of include paths.
Exceptions:
- #includes in the moved file were cleaned up slightly, and include
  guards adjusted.
- Places where it was included as "gromacs/legacyheaders/vec.h" were
  handled manually and the include order adjusted.
- Removal of unnecessary #include "vec.h" from update.h revealed some
  transitive dependencies that were fixed.  Some associated include
  order cleanup in these files.
- Removed some duplicate includes.
- Remove dependency from linearalgebra/matrix.c to vec.h (only needed
  for a single sqr()) to avoid a cyclic math <-> linearalgebra
  dependency.

Part of #1415.

Change-Id: I7ece6eafa22139215510148807c5979f8950a885

diff --git a/src/contrib/anaf.c b/src/contrib/anaf.c
index 023137cbdb74da76933c73d61a0150c41fcd8d59..0f5ab1a4077ba63a792dc41fb79dcc22a92e36ff 100644 (file)
--- a/src/contrib/anaf.c
+++ b/src/contrib/anaf.c
@@ -53,7 +53,7 @@
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trnio.h"
 #include "txtdump.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 static char *nm[5]  = { "OW", "HW1", "HW2", "DW", "SW" };
   

diff --git a/src/contrib/calcfdev.c b/src/contrib/calcfdev.c
index d9188037f7ef70c2c6f3b6cea5a166771e226685..ac2066f0582b561f6e65c30c8863e246d35cc9ce 100644 (file)
--- a/src/contrib/calcfdev.c
+++ b/src/contrib/calcfdev.c
@@ -37,7 +37,7 @@
 #endif
 
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "txtdump.h"
 
 void calc_force(int natom,rvec f[],rvec fff[])

diff --git a/src/contrib/compnl.c b/src/contrib/compnl.c
index fc0bc797fe7f3b0a4e72f95acd83819a400826e1..da6104675aafb1079923a08d29c8ca47586ada96 100644 (file)
--- a/src/contrib/compnl.c
+++ b/src/contrib/compnl.c
@@ -45,7 +45,7 @@
 #include "copyrite.h"
 #include "gromacs/fileio/confio.h"
 #include "pbc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 int main(int argc,char *argv[])
 {

diff --git a/src/contrib/do_multiprot.c b/src/contrib/do_multiprot.c
index e041d004436878a5403e50c7b30b6cedd7774102..43f14ff9ddf0c8ec748d946af41c7cf7d2cd1c3d 100644 (file)
--- a/src/contrib/do_multiprot.c
+++ b/src/contrib/do_multiprot.c
@@ -54,7 +54,7 @@
 #include "gromacs/fileio/tpxio.h"
 #include "viewit.h"
 #include "gbutil.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/confio.h"
 #include "gromacs/fileio/gmxfio.h"
 

diff --git a/src/contrib/ehanal.c b/src/contrib/ehanal.c
index 95f4ab9a0d2fda0c60b199591afc0d30fc4be277..7d488ce6e058c5ded03588b2a023b933a5d2b80a 100644 (file)
--- a/src/contrib/ehanal.c
+++ b/src/contrib/ehanal.c
@@ -48,7 +48,7 @@
 #include "gromacs/utility/futil.h"
 #include "physics.h"
 #include "gromacs/fileio/xvgr.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "names.h"
 #include "ehdata.h"
 #include "gromacs/fileio/pdbio.h"

diff --git a/src/contrib/ehole.c b/src/contrib/ehole.c
index 0f4f23700281a77f2bb795c79fa1eb9c8043b66a..36541aa6e439716568cbdddef9ea4347b4eaf589 100644 (file)
--- a/src/contrib/ehole.c
+++ b/src/contrib/ehole.c
@@ -49,7 +49,7 @@
 #include "gromacs/fileio/pdbio.h"
 #include "gromacs/utility/futil.h"
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "names.h"
 #include "ehdata.h"
 

diff --git a/src/contrib/g_anavel.c b/src/contrib/g_anavel.c
index 5f3f1f36a1b0dd015194d99b3425553857f47631..0573d7c69305fcdc16d0fea85722c94d274e8544 100644 (file)
--- a/src/contrib/g_anavel.c
+++ b/src/contrib/g_anavel.c
@@ -43,7 +43,7 @@
 #include "names.h"
 #include "gromacs/fileio/matio.h"
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "copyrite.h"
 #include "index.h"

diff --git a/src/contrib/gen_table.c b/src/contrib/gen_table.c
index a0942f7cb883a2aeab75e9bb09a8be2637cf379f..95d8f6457da6036a32c97a6e959cbb27172cb54a 100644 (file)
--- a/src/contrib/gen_table.c
+++ b/src/contrib/gen_table.c
@@ -39,7 +39,7 @@
 #include "copyrite.h"
 #include "typedefs.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/commandline/pargs.h"
 #include "coulomb.h"
 

diff --git a/src/contrib/gmx_sdf.c b/src/contrib/gmx_sdf.c
index e6bb88d60f2bdee4cbe256bf475bf35b6a0631be..cd27e7b6102c9e6d14246be871cd185ec77a8643 100644 (file)
--- a/src/contrib/gmx_sdf.c
+++ b/src/contrib/gmx_sdf.c
@@ -22,7 +22,7 @@
 
 #include "typedefs.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "rmpbc.h"
 #include "copyrite.h"

diff --git a/src/contrib/gmx_stats_test.c b/src/contrib/gmx_stats_test.c
index 1896bd00a6f4d6f65945cdc87265aaeaa239c7f6..e9091879bff4202dffaba61ae2a59b24f50644a3 100644 (file)
--- a/src/contrib/gmx_stats_test.c
+++ b/src/contrib/gmx_stats_test.c
@@ -1,7 +1,7 @@
 #include <stdio.h>
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gmx_random.h"
 #include "gmx_statistics.h"
 

diff --git a/src/contrib/hexamer.c b/src/contrib/hexamer.c
index 986044be95bc23e7408cf1c4f9c3bdd9eb98e4e5..21ea976763cf329bca0ee2fde1d92396a1c3eb5f 100644 (file)
--- a/src/contrib/hexamer.c
+++ b/src/contrib/hexamer.c
@@ -48,7 +48,7 @@
 #include "copyrite.h"
 #include "gromacs/commandline/pargs.h"
 #include "index.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "gbutil.h"
 #include "physics.h"

diff --git a/src/contrib/hrefify.c b/src/contrib/hrefify.c
index 315fc5e6caeaf0209b5526658b07eaae58dacb5b..6fc113b603368689326461ec115fa42948f6ce28 100644 (file)
--- a/src/contrib/hrefify.c
+++ b/src/contrib/hrefify.c
@@ -44,7 +44,7 @@
 #include "macros.h"
 #include "gromacs/utility/cstringutil.h"
 #include "gromacs/fileio/confio.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/commandline/pargs.h"
 #include "copyrite.h"
 #include "gromacs/fileio/pdbio.h"

diff --git a/src/contrib/mkice.c b/src/contrib/mkice.c
index d90fb3f0226cc029afc312cf9545563e02ea3240..b0c5bb9a30838bf51da1ea1248d90fd3ddfc71ee 100644 (file)
--- a/src/contrib/mkice.c
+++ b/src/contrib/mkice.c
@@ -45,7 +45,7 @@
 #include "gromacs/fileio/pdbio.h"
 #include "macros.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "physics.h"
 #include "names.h"

diff --git a/src/contrib/pmetest.c b/src/contrib/pmetest.c
index a5e9f80f0d7e8e10aec456c54f51158f243ee175..b54db685f924a2a12125b358901ba94515e3f194 100644 (file)
--- a/src/contrib/pmetest.c
+++ b/src/contrib/pmetest.c
@@ -46,7 +46,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "mdatoms.h"
 #include "coulomb.h"
 #include "nsb.h"

diff --git a/src/contrib/test.c b/src/contrib/test.c
index 7f9583afb0e35f04ba2f4de158d5b26bb3c4ef46..f41e6c0b4b7022cbc509da27e59d86474445c972 100644 (file)
--- a/src/contrib/test.c
+++ b/src/contrib/test.c
@@ -47,7 +47,7 @@
 #include "gromacs/fileio/pdbio.h"
 #include "macros.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "physics.h"
 #include "names.h"

diff --git a/src/contrib/testlr.c b/src/contrib/testlr.c
index 0811c24f7f29c2b1b58f4712ca14c42cb619a88b..b48a0c1b93dab7a8c59a7da1aaf54553d4ee1de4 100644 (file)
--- a/src/contrib/testlr.c
+++ b/src/contrib/testlr.c
@@ -35,7 +35,7 @@
 #include <math.h>
 #include <string.h>
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "physics.h"
 #include "macros.h"
 #include "names.h"

diff --git a/src/gromacs/analysisdata/modules/plot.cpp b/src/gromacs/analysisdata/modules/plot.cpp
index 7b0f0b20e31050152dec42bdc7ed4ef7261d6913..d0eff0bf7165fce359044f202fac8c9a63c0f011 100644 (file)
--- a/src/gromacs/analysisdata/modules/plot.cpp
+++ b/src/gromacs/analysisdata/modules/plot.cpp
@@ -50,11 +50,11 @@
 #include <boost/shared_ptr.hpp>
 
 #include "gromacs/legacyheaders/oenv.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/analysisdata/dataframe.h"
 #include "gromacs/fileio/gmxfio.h"
 #include "gromacs/fileio/xvgr.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/options/basicoptions.h"
 #include "gromacs/options/options.h"
 #include "gromacs/options/timeunitmanager.h"

diff --git a/src/gromacs/essentialdynamics/edsam.c b/src/gromacs/essentialdynamics/edsam.c
index 028e9f9636dcb252a933eaf744f8b0d0540e54ce..d2885ea278cdf24d5995e28334d6e816791273ee 100644 (file)
--- a/src/gromacs/essentialdynamics/edsam.c
+++ b/src/gromacs/essentialdynamics/edsam.c
@@ -48,7 +48,7 @@
 #include "names.h"
 #include "gromacs/fileio/confio.h"
 #include "txtdump.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 #include "mshift.h"
 #include "mdrun.h"

diff --git a/src/gromacs/fileio/confio.c b/src/gromacs/fileio/confio.c
index e023771a00324d5e2e79086c52a02e507cdbd215..cb834342bb8725d216b5e870daec028470592228 100644 (file)
--- a/src/gromacs/fileio/confio.c
+++ b/src/gromacs/fileio/confio.c
@@ -45,7 +45,7 @@
 #include "macros.h"
 #include "gromacs/utility/cstringutil.h"
 #include "confio.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "symtab.h"
 #include "gromacs/utility/futil.h"
 #include "xdrf.h"

diff --git a/src/gromacs/fileio/enxio.c b/src/gromacs/fileio/enxio.c
index 70718363dfbb94a87c48717543d880d594b914b5..e1e16848bb271f22d64ac812de2103c665768330 100644 (file)
--- a/src/gromacs/fileio/enxio.c
+++ b/src/gromacs/fileio/enxio.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gmxfio.h"
 #include "enxio.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "xdrf.h"
 #include "macros.h"
 

diff --git a/src/gromacs/fileio/mdoutf.c b/src/gromacs/fileio/mdoutf.c
index bb820b6290121ad4308ef6ef5c197ea838fc18a9..5503deff70440748c8d57187929c25057ddd0b68 100644 (file)
--- a/src/gromacs/fileio/mdoutf.c
+++ b/src/gromacs/fileio/mdoutf.c
@@ -46,6 +46,7 @@
 #include "copyrite.h"
 
 #include "gromacs/fileio/xvgr.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/utility/smalloc.h"
 

diff --git a/src/gromacs/fileio/pdbio.c b/src/gromacs/fileio/pdbio.c
index 1d3dc922ee2d8acb4ce3494c0df7bc910ba22166..d1974d0f69aab40dba63d029d88d993c8fac101d 100644 (file)
--- a/src/gromacs/fileio/pdbio.c
+++ b/src/gromacs/fileio/pdbio.c
@@ -42,13 +42,9 @@
 #include <stdlib.h>
 #include <string.h>
 
-#include "gromacs/utility/cstringutil.h"
-#include "vec.h"
-#include "gromacs/utility/smalloc.h"
 #include "typedefs.h"
 #include "symtab.h"
 #include "pdbio.h"
-#include "vec.h"
 #include "copyrite.h"
 #include "gromacs/utility/futil.h"
 #include "atomprop.h"
@@ -56,7 +52,10 @@
 #include "pbc.h"
 #include "gmxfio.h"
 
+#include "gromacs/math/vec.h"
+#include "gromacs/utility/cstringutil.h"
 #include "gromacs/utility/fatalerror.h"
+#include "gromacs/utility/smalloc.h"
 
 typedef struct {
     int ai, aj;

diff --git a/src/gromacs/fileio/tpxio.c b/src/gromacs/fileio/tpxio.c
index 338b99edb758a93f813a6a833cff53580401c139..6cdfb19eb63c52b1d1826e1bb7817227cce131d7 100644 (file)
--- a/src/gromacs/fileio/tpxio.c
+++ b/src/gromacs/fileio/tpxio.c
@@ -57,7 +57,7 @@
 #include "confio.h"
 #include "atomprop.h"
 #include "copyrite.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "mtop_util.h"
 
 #define TPX_TAG_RELEASE  "release"

diff --git a/src/gromacs/fileio/trajectory_writing.c b/src/gromacs/fileio/trajectory_writing.c
index 3f90db4cf218474db331647bf56fbba34381e64b..f19020867d31b904a414ac45f0df01e401c0a933 100644 (file)
--- a/src/gromacs/fileio/trajectory_writing.c
+++ b/src/gromacs/fileio/trajectory_writing.c
@@ -38,7 +38,7 @@
 
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "sim_util.h"
 #include "mdrun.h"
 #include "confio.h"

diff --git a/src/gromacs/fileio/trxio.c b/src/gromacs/fileio/trxio.c
index 95cfc24dc591dc06ac8e639f8017bf58a0cfbe8f..c0d1a13239b06358700a11b37cf4b3cef2394a4a 100644 (file)
--- a/src/gromacs/fileio/trxio.c
+++ b/src/gromacs/fileio/trxio.c
@@ -56,7 +56,7 @@
 #include "tngio.h"
 #include "tngio_for_tools.h"
 #include "names.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "xtcio.h"
 #include "pdbio.h"

diff --git a/src/gromacs/fileio/vmdio.c b/src/gromacs/fileio/vmdio.c
index 9a4a0ecd6c97cae8f46866da07f474b5bdb1a2a5..6d1369da36702949283a9040c009751fb2f81631 100644 (file)
--- a/src/gromacs/fileio/vmdio.c
+++ b/src/gromacs/fileio/vmdio.c
@@ -107,7 +107,7 @@
 
 
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gmxfio.h"
 
 

diff --git a/src/gromacs/fileio/xtcio.c b/src/gromacs/fileio/xtcio.c
index 7ca5141139b808e21522418a0c0b8580699c5d19..b1ebf54d1e61becbf061c5c414f24c3ece6b00ee 100644 (file)
--- a/src/gromacs/fileio/xtcio.c
+++ b/src/gromacs/fileio/xtcio.c
@@ -44,7 +44,7 @@
 #include "gmxfio.h"
 #include "xtcio.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/utility/fatalerror.h"
 

diff --git a/src/gromacs/fileio/xvgr.cpp b/src/gromacs/fileio/xvgr.cpp
index 37836b6821511ebe20c2c5955522a5c5cae6dfc4..49081481faba437a3aa46fb7483e8211c691412c 100644 (file)
--- a/src/gromacs/fileio/xvgr.cpp
+++ b/src/gromacs/fileio/xvgr.cpp
@@ -50,9 +50,9 @@
 
 #include "gromacs/legacyheaders/copyrite.h"
 #include "gromacs/legacyheaders/oenv.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/fileio/gmxfio.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/cstringutil.h"
 #include "gromacs/utility/exceptions.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/anadih.c b/src/gromacs/gmxana/anadih.c
index 78db627e41dd3c38ff8dd94ef8bf333618f373e3..b83b1b88f19d2835955b828c1d7603fae7737b96 100644 (file)
--- a/src/gromacs/gmxana/anadih.c
+++ b/src/gromacs/gmxana/anadih.c
@@ -48,7 +48,7 @@
 #include "bondf.h"
 #include "gromacs/fileio/xvgr.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gstat.h"
 #include "gromacs/fileio/confio.h"
 #include "gromacs/fileio/trxio.h"

diff --git a/src/gromacs/gmxana/autocorr.c b/src/gromacs/gmxana/autocorr.c
index 7645f15d98d95e321194799422e2b10f4ae366f6..755d330ba22b522ba037b67d35f83c0d8133ec34 100644 (file)
--- a/src/gromacs/gmxana/autocorr.c
+++ b/src/gromacs/gmxana/autocorr.c
@@ -51,7 +51,7 @@
 #include "gstat.h"
 #include "names.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "correl.h"
 
 #define MODE(x) ((mode & (x)) == (x))

diff --git a/src/gromacs/gmxana/cmat.c b/src/gromacs/gmxana/cmat.c
index 9c2bb517c601216e33cefd263d36abff92242bdd..69a94a6c518e74e45d93d9f5d3a0bdcffd7f27c7 100644 (file)
--- a/src/gromacs/gmxana/cmat.c
+++ b/src/gromacs/gmxana/cmat.c
@@ -41,7 +41,7 @@
 #include "cmat.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "gromacs/fileio/matio.h"
 #include "gromacs/utility/futil.h"

diff --git a/src/gromacs/gmxana/dens_filter.c b/src/gromacs/gmxana/dens_filter.c
index 585422bde3626d1b9389954ddc4129349bfd44b1..571c18f974e7fa9942ff2b8e607abcf90ac608ef 100644 (file)
--- a/src/gromacs/gmxana/dens_filter.c
+++ b/src/gromacs/gmxana/dens_filter.c
@@ -44,7 +44,7 @@
 #include "typedefs.h"
 #include "dens_filter.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 #ifdef GMX_DOUBLE
 #define EXP(x) (exp(x))

diff --git a/src/gromacs/gmxana/eigio.c b/src/gromacs/gmxana/eigio.c
index be4982b0665be9669ee4c201d4071fd399d5539e..015724c2bf28066fe75cc89b61b0f27dadd2ea18 100644 (file)
--- a/src/gromacs/gmxana/eigio.c
+++ b/src/gromacs/gmxana/eigio.c
@@ -39,7 +39,7 @@
 #endif
 
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "eigio.h"
 #include "gromacs/fileio/trnio.h"
 #include "gromacs/fileio/tpxio.h"

diff --git a/src/gromacs/gmxana/expfit.c b/src/gromacs/gmxana/expfit.c
index 80ba9ee55b85d7324f96ae84f82bf9e608646160..ee125c8b8e3f95aa6faf2aded1ab51b113b83de1 100644 (file)
--- a/src/gromacs/gmxana/expfit.c
+++ b/src/gromacs/gmxana/expfit.c
@@ -46,7 +46,7 @@
 #include "gromacs/fileio/xvgr.h"
 #include "gromacs/utility/futil.h"
 #include "gstat.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/fitahx.c b/src/gromacs/gmxana/fitahx.c
index ebf5b50f6b84da3332e54c74374c4b876294de59..3b274ea1d52a65255b4bb474dda2400817e6f7b9 100644 (file)
--- a/src/gromacs/gmxana/fitahx.c
+++ b/src/gromacs/gmxana/fitahx.c
@@ -39,7 +39,7 @@
 #endif
 
 #include "fitahx.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 #include "gromacs/math/do_fit.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/geminate.c b/src/gromacs/gmxana/geminate.c
index 7d00997b1cfa5e943b4ea037cbda075807b3560c..32d8f8c5a7861cd206a3b780f7973b3c8b5726af 100644 (file)
--- a/src/gromacs/gmxana/geminate.c
+++ b/src/gromacs/gmxana/geminate.c
@@ -41,7 +41,7 @@
 
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "geminate.h"
 
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/gmx_anadock.c b/src/gromacs/gmxana/gmx_anadock.c
index dc7304ac88c857da72509a2cd69c11566c00ce4b..9dbd563fba2bb30cd92e4b40d29446ee322bf1dc 100644 (file)
--- a/src/gromacs/gmxana/gmx_anadock.c
+++ b/src/gromacs/gmxana/gmx_anadock.c
@@ -47,7 +47,7 @@
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/cstringutil.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/statistics/statistics.h"
 #include "gromacs/commandline/pargs.h"
 #include "typedefs.h"

diff --git a/src/gromacs/gmxana/gmx_anaeig.c b/src/gromacs/gmxana/gmx_anaeig.c
index b47274b950f63632ebbf06e13ad5d570e9c28ec5..958b2719360fce76c89bf40017a8c0229c0d6c7b 100644 (file)
--- a/src/gromacs/gmxana/gmx_anaeig.c
+++ b/src/gromacs/gmxana/gmx_anaeig.c
@@ -47,7 +47,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_analyze.c b/src/gromacs/gmxana/gmx_analyze.c
index fd6a7548e9dda0dfccdd5e634c19c068b3ee5250..c84f3edda7d185078475b5db1944ec546caf9bdc 100644 (file)
--- a/src/gromacs/gmxana/gmx_analyze.c
+++ b/src/gromacs/gmxana/gmx_analyze.c
@@ -47,7 +47,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "copyrite.h"
 #include "gromacs/utility/futil.h"
 #include "readinp.h"

diff --git a/src/gromacs/gmxana/gmx_angle.c b/src/gromacs/gmxana/gmx_angle.c
index 3354d787df65683dc3bf5608618940811148bb17..b4778fd6de8e8444e2189e2aae4a72e6bd123aab 100644 (file)
--- a/src/gromacs/gmxana/gmx_angle.c
+++ b/src/gromacs/gmxana/gmx_angle.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/futil.h"
 #include "gromacs/commandline/pargs.h"
 #include "copyrite.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/gmx_bundle.c b/src/gromacs/gmxana/gmx_bundle.c
index 3c40ffd893381887e27f2872accac32f749e41cd..18326cb0cfe0e208b715e0016e27fa238f0a9473 100644 (file)
--- a/src/gromacs/gmxana/gmx_bundle.c
+++ b/src/gromacs/gmxana/gmx_bundle.c
@@ -44,7 +44,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"
 #include "gromacs/fileio/xvgr.h"

diff --git a/src/gromacs/gmxana/gmx_chi.c b/src/gromacs/gmxana/gmx_chi.c
index 2198a1439cd80ffd356a0ca697491594e77ceed9..eaddaaca926f2121f1107a0229b346dc1443216a 100644 (file)
--- a/src/gromacs/gmxana/gmx_chi.c
+++ b/src/gromacs/gmxana/gmx_chi.c
@@ -56,7 +56,7 @@
 #include "gromacs/fileio/tpxio.h"
 #include "txtdump.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "gromacs/fileio/matio.h"

diff --git a/src/gromacs/gmxana/gmx_cluster.c b/src/gromacs/gmxana/gmx_cluster.c
index 98bf273f159b21c08ba41a6e0db776bdafee9ac2..1e8c9229a68f67627a2a30c3dd7b23ef4774f60a 100644 (file)
--- a/src/gromacs/gmxana/gmx_cluster.c
+++ b/src/gromacs/gmxana/gmx_cluster.c
@@ -49,7 +49,7 @@
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
 #include "gromacs/utility/cstringutil.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 #include "index.h"
 #include "gromacs/random/random.h"

diff --git a/src/gromacs/gmxana/gmx_clustsize.c b/src/gromacs/gmxana/gmx_clustsize.c
index 93a09cc4441899bf363b80b080076de247aab99a..2168930c64afe6ff0bf6e294510a977903c9e6c0 100644 (file)
--- a/src/gromacs/gmxana/gmx_clustsize.c
+++ b/src/gromacs/gmxana/gmx_clustsize.c
@@ -42,7 +42,7 @@
 
 #include "typedefs.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "rmpbc.h"
 #include "gromacs/commandline/pargs.h"

diff --git a/src/gromacs/gmxana/gmx_confrms.c b/src/gromacs/gmxana/gmx_confrms.c
index 20927b5f5ac4b5af7ca284567a3e55dd1737a92f..37f90b9d08ab54fb5151dff90763bb23c0e25825 100644 (file)
--- a/src/gromacs/gmxana/gmx_confrms.c
+++ b/src/gromacs/gmxana/gmx_confrms.c
@@ -47,7 +47,7 @@
 #include "typedefs.h"
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/fileio/tpxio.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "pbc.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/gmx_covar.c b/src/gromacs/gmxana/gmx_covar.c
index 9e4b5fc1eb6e50a0ca9f96cfee5b2242f7fa6353..93128a5a44059e20754d886db0ecebba718f9068 100644 (file)
--- a/src/gromacs/gmxana/gmx_covar.c
+++ b/src/gromacs/gmxana/gmx_covar.c
@@ -50,7 +50,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_current.c b/src/gromacs/gmxana/gmx_current.c
index 8381843303852c7d686465c9cdbc1bd847744460..19bd0a0beac693dd1fe3a5b951e67b1e010e4dfc 100644 (file)
--- a/src/gromacs/gmxana/gmx_current.c
+++ b/src/gromacs/gmxana/gmx_current.c
@@ -41,7 +41,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
 #include "gromacs/fileio/xvgr.h"

diff --git a/src/gromacs/gmxana/gmx_density.c b/src/gromacs/gmxana/gmx_density.c
index 2c7b839e38137cf3d47058e1c864e6772361e6db..a27ccbdef25bdc1686c0f3c6c2c8903cdbd52035 100644 (file)
--- a/src/gromacs/gmxana/gmx_density.c
+++ b/src/gromacs/gmxana/gmx_density.c
@@ -48,7 +48,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gstat.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_densmap.c b/src/gromacs/gmxana/gmx_densmap.c
index 556014479b4e8bb6867b53f6263427799184ca80..6fda0a91afe964009204355b767898ffa4d3e488 100644 (file)
--- a/src/gromacs/gmxana/gmx_densmap.c
+++ b/src/gromacs/gmxana/gmx_densmap.c
@@ -45,7 +45,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_densorder.cpp b/src/gromacs/gmxana/gmx_densorder.cpp
index 13af8726ac978fdb5977fc3acbe12b83cfb44046..4f79306923bc90c210c919b8054a8f1a8c800447 100644 (file)
--- a/src/gromacs/gmxana/gmx_densorder.cpp
+++ b/src/gromacs/gmxana/gmx_densorder.cpp
@@ -45,7 +45,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gstat.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"

diff --git a/src/gromacs/gmxana/gmx_dipoles.cpp b/src/gromacs/gmxana/gmx_dipoles.cpp
index 0b4b1c7fc486516ab464ba8bf79e553f2550a1d1..ab4b6639b87678a20fbe6df1e9baa3c325f61051 100644 (file)
--- a/src/gromacs/gmxana/gmx_dipoles.cpp
+++ b/src/gromacs/gmxana/gmx_dipoles.cpp
@@ -45,7 +45,7 @@
 #include "macros.h"
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "bondf.h"
 #include "gromacs/utility/futil.h"

diff --git a/src/gromacs/gmxana/gmx_disre.c b/src/gromacs/gmxana/gmx_disre.c
index 85623881a34c3968d8e9e045efd1e06d1a440482..c80a039f593f86d495fe54d51101c9d0cd1bb326 100644 (file)
--- a/src/gromacs/gmxana/gmx_disre.c
+++ b/src/gromacs/gmxana/gmx_disre.c
@@ -47,7 +47,7 @@
 #include "mshift.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/confio.h"
 #include "gromacs/utility/smalloc.h"
 #include "nrnb.h"

diff --git a/src/gromacs/gmxana/gmx_dos.c b/src/gromacs/gmxana/gmx_dos.c
index 31ce324c77fa707271b912b1c7b8b8a3c2d45d83..8024057a7944906ed7d76b0f5fdc0f9a6fbbe1f1 100644 (file)
--- a/src/gromacs/gmxana/gmx_dos.c
+++ b/src/gromacs/gmxana/gmx_dos.c
@@ -54,7 +54,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "txtdump.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "correl.h"

diff --git a/src/gromacs/gmxana/gmx_dyecoupl.c b/src/gromacs/gmxana/gmx_dyecoupl.c
index ee42cbe9a9a65ae8c0c99a9ecbf58433d9f094a5..56bd98ff8dffab9b64faab216f9ed73022751d20 100644 (file)
--- a/src/gromacs/gmxana/gmx_dyecoupl.c
+++ b/src/gromacs/gmxana/gmx_dyecoupl.c
@@ -38,7 +38,7 @@
 #include "pbc.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/commandline/pargs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "gromacs/fileio/trxio.h"
 

diff --git a/src/gromacs/gmxana/gmx_dyndom.c b/src/gromacs/gmxana/gmx_dyndom.c
index 7b1b6c7a1ab2fd3f8c15915e8f78bbfd08fb10bd..0bf46e5f32c1ebe646fd3506375f9a6d7dc63812 100644 (file)
--- a/src/gromacs/gmxana/gmx_dyndom.c
+++ b/src/gromacs/gmxana/gmx_dyndom.c
@@ -44,7 +44,7 @@
 #include "index.h"
 #include "gromacs/fileio/confio.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "physics.h"
 #include "gmx_ana.h"
 #include "macros.h"

diff --git a/src/gromacs/gmxana/gmx_editconf.c b/src/gromacs/gmxana/gmx_editconf.c
index b4ca3a376ac07273ffde5dc4850a1f3b25040cea..2b3c5ab0c532f175b6e0c88969f980a936de6af1 100644 (file)
--- a/src/gromacs/gmxana/gmx_editconf.c
+++ b/src/gromacs/gmxana/gmx_editconf.c
@@ -49,7 +49,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/fileio/strdb.h"
 #include "index.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "gromacs/gmxlib/conformation-utilities.h"
 #include "physics.h"

diff --git a/src/gromacs/gmxana/gmx_eneconv.c b/src/gromacs/gmxana/gmx_eneconv.c
index ef2a219e541a4ce98ce3fcf99e4e2c2fac0a48b3..ef58eca11415a7d66f0a7a5815da08455f0fd21c 100644 (file)
--- a/src/gromacs/gmxana/gmx_eneconv.c
+++ b/src/gromacs/gmxana/gmx_eneconv.c
@@ -50,7 +50,7 @@
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/fileio/enxio.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gmx_ana.h"
 #include "gromacs/fileio/trxio.h"
 

diff --git a/src/gromacs/gmxana/gmx_enemat.c b/src/gromacs/gmxana/gmx_enemat.c
index 694c1418f4aebd58641e06ebc9c599b293fef0b5..5d94bd078c4cc3e1a90e8ae582f5b543aea71b04 100644 (file)
--- a/src/gromacs/gmxana/gmx_enemat.c
+++ b/src/gromacs/gmxana/gmx_enemat.c
@@ -43,7 +43,7 @@
 #include "gromacs/utility/cstringutil.h"
 #include "typedefs.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/fileio/enxio.h"
 #include "gromacs/commandline/pargs.h"

diff --git a/src/gromacs/gmxana/gmx_energy.c b/src/gromacs/gmxana/gmx_energy.c
index d7ad5505a9b65c42fc80a4c853adc50bf0b5d41a..c73c06b561effdc50ce01322b5ed3f240aec9c36 100644 (file)
--- a/src/gromacs/gmxana/gmx_energy.c
+++ b/src/gromacs/gmxana/gmx_energy.c
@@ -44,7 +44,7 @@
 
 #include "typedefs.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/cstringutil.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/fileio/enxio.h"

diff --git a/src/gromacs/gmxana/gmx_filter.c b/src/gromacs/gmxana/gmx_filter.c
index 67e9acbf68f3476dac4c268eba87f4270d8f9e6c..f16d8bc6927c3ba0324a20f05dad8df7e74f739b 100644 (file)
--- a/src/gromacs/gmxana/gmx_filter.c
+++ b/src/gromacs/gmxana/gmx_filter.c
@@ -44,7 +44,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"

diff --git a/src/gromacs/gmxana/gmx_genion.c b/src/gromacs/gmxana/gmx_genion.c
index 34cbf38a9a3c3492d3d7e35124fb25e95b62259c..c744fc7a88134bebefb64b6f8f7349b0da10940e 100644 (file)
--- a/src/gromacs/gmxana/gmx_genion.c
+++ b/src/gromacs/gmxana/gmx_genion.c
@@ -52,7 +52,7 @@
 #include "gromacs/utility/futil.h"
 #include "gromacs/math/utilities.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/tpxio.h"
 #include "mdrun.h"
 #include "gromacs/random/random.h"

diff --git a/src/gromacs/gmxana/gmx_genpr.c b/src/gromacs/gmxana/gmx_genpr.c
index 18479927897817bb62613a6dfe9b6cbeb3962c84..71d2a2077206d0ee21caba70803a4b50d821956e 100644 (file)
--- a/src/gromacs/gmxana/gmx_genpr.c
+++ b/src/gromacs/gmxana/gmx_genpr.c
@@ -47,7 +47,7 @@
 #include "gromacs/fileio/confio.h"
 #include "gromacs/utility/futil.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "gromacs/utility/cstringutil.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/gmx_gyrate.c b/src/gromacs/gmxana/gmx_gyrate.c
index 573a33c0962eab221a728a7bab665f82a6273f7f..cd73497be10681bc83552a56c960ff3ecc294b90 100644 (file)
--- a/src/gromacs/gmxana/gmx_gyrate.c
+++ b/src/gromacs/gmxana/gmx_gyrate.c
@@ -45,7 +45,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_h2order.c b/src/gromacs/gmxana/gmx_h2order.c
index b6a56a94bd9034b78bbaa232e6c7b7f2a1056ca2..3e5f7a44a1f46ec7c5626b93f948ae72fe90b615 100644 (file)
--- a/src/gromacs/gmxana/gmx_h2order.c
+++ b/src/gromacs/gmxana/gmx_h2order.c
@@ -46,7 +46,7 @@
 #include "macros.h"
 #include "princ.h"
 #include "rmpbc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_hbond.c b/src/gromacs/gmxana/gmx_hbond.c
index 7a6ef9561f056e110ec2319035e14ac016cfb98b..3a86c9780edcc33bfcc6ae944e63aa3b73d1e95d 100644 (file)
--- a/src/gromacs/gmxana/gmx_hbond.c
+++ b/src/gromacs/gmxana/gmx_hbond.c
@@ -49,7 +49,7 @@
 #include "gromacs/utility/fatalerror.h"
 #include "index.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "gstat.h"

diff --git a/src/gromacs/gmxana/gmx_helix.c b/src/gromacs/gmxana/gmx_helix.c
index a5490e110babe86307d031fef4fa64cbe36f554e..b72d04ea57d884a468aa8f777606fafd04f1b3fa 100644 (file)
--- a/src/gromacs/gmxana/gmx_helix.c
+++ b/src/gromacs/gmxana/gmx_helix.c
@@ -58,7 +58,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "txtdump.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "gmx_ana.h"

diff --git a/src/gromacs/gmxana/gmx_helixorient.c b/src/gromacs/gmxana/gmx_helixorient.c
index f1b32bf0d717f2f5ad68fd23eb911ed2a5191675..42bd2a01b139c1467e899e4428f660fdf43a2d4f 100644 (file)
--- a/src/gromacs/gmxana/gmx_helixorient.c
+++ b/src/gromacs/gmxana/gmx_helixorient.c
@@ -45,7 +45,7 @@
 #include "macros.h"
 #include "gromacs/fileio/xvgr.h"
 #include "gromacs/commandline/pargs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "pbc.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/gmx_hydorder.c b/src/gromacs/gmxana/gmx_hydorder.c
index b2909d15d323c4c7d5219c746e5c4a8caa365810..c6fb42a8ba1914421ce56ae8bf1ff2343dd3d7b9 100644 (file)
--- a/src/gromacs/gmxana/gmx_hydorder.c
+++ b/src/gromacs/gmxana/gmx_hydorder.c
@@ -45,7 +45,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gstat.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"

diff --git a/src/gromacs/gmxana/gmx_lie.c b/src/gromacs/gmxana/gmx_lie.c
index 4e0c08bebd61d634e0a1286a45b8a6725d9c888c..4b3dd857c7aa2a1cbdbfc051909d492e0cf213da 100644 (file)
--- a/src/gromacs/gmxana/gmx_lie.c
+++ b/src/gromacs/gmxana/gmx_lie.c
@@ -47,7 +47,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "txtdump.h"
 #include "gromacs/fileio/enxio.h"

diff --git a/src/gromacs/gmxana/gmx_make_edi.c b/src/gromacs/gmxana/gmx_make_edi.c
index 4d70280c4a9bb99d08c85e1924e44c3120a2712a..c2b85efcef447f43703117d018660e2ed71833d5 100644 (file)
--- a/src/gromacs/gmxana/gmx_make_edi.c
+++ b/src/gromacs/gmxana/gmx_make_edi.c
@@ -50,7 +50,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/fileio/pdbio.h"

diff --git a/src/gromacs/gmxana/gmx_make_ndx.c b/src/gromacs/gmxana/gmx_make_ndx.c
index 45a7e6f421a30422aadfd8948ef0e8f15c2e3f26..79bbd23602c8403c63b4e367a56fc50681e4239b 100644 (file)
--- a/src/gromacs/gmxana/gmx_make_ndx.c
+++ b/src/gromacs/gmxana/gmx_make_ndx.c
@@ -49,7 +49,7 @@
 #include "typedefs.h"
 #include "index.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxana/gmx_mdmat.c b/src/gromacs/gmxana/gmx_mdmat.c
index 66bbbff6d1538245df4ad82fd28c45b9f926e544..d11ca0d2f4dc2119f36f55aafce1fd64b5f07004 100644 (file)
--- a/src/gromacs/gmxana/gmx_mdmat.c
+++ b/src/gromacs/gmxana/gmx_mdmat.c
@@ -42,7 +42,7 @@
 #include <string.h>
 
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "gromacs/fileio/filenm.h"
 #include "gromacs/commandline/pargs.h"

diff --git a/src/gromacs/gmxana/gmx_mindist.c b/src/gromacs/gmxana/gmx_mindist.c
index f42e7934c793dbc3c87b5f8c32e62f480a091324..33e54d3e134de781e6852dd03293d59c3369af3e 100644 (file)
--- a/src/gromacs/gmxana/gmx_mindist.c
+++ b/src/gromacs/gmxana/gmx_mindist.c
@@ -45,7 +45,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_msd.c b/src/gromacs/gmxana/gmx_msd.c
index 9570957ebaf15c5c25ac83487eb68e93408e12b5..efc4432f5a60af707219c25a196a449556c34b12 100644 (file)
--- a/src/gromacs/gmxana/gmx_msd.c
+++ b/src/gromacs/gmxana/gmx_msd.c
@@ -55,7 +55,7 @@
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
 #include "pbc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/confio.h"
 #include "gmx_ana.h"
 

diff --git a/src/gromacs/gmxana/gmx_nmeig.c b/src/gromacs/gmxana/gmx_nmeig.c
index 953e4eae5fc7ca2236b86a04762bb9b810c79cfb..2475f0ca31ecb18359af431073c3c662c1d7305c 100644 (file)
--- a/src/gromacs/gmxana/gmx_nmeig.c
+++ b/src/gromacs/gmxana/gmx_nmeig.c
@@ -45,7 +45,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "copyrite.h"
 #include "gromacs/utility/futil.h"

diff --git a/src/gromacs/gmxana/gmx_nmens.c b/src/gromacs/gmxana/gmx_nmens.c
index c0736502a7a5310b80d52a29ac93f1865a3b5519..d8859cc635420c266853b5287dc03d5eda61cab5 100644 (file)
--- a/src/gromacs/gmxana/gmx_nmens.c
+++ b/src/gromacs/gmxana/gmx_nmens.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"
 #include "gromacs/fileio/pdbio.h"

diff --git a/src/gromacs/gmxana/gmx_nmtraj.c b/src/gromacs/gmxana/gmx_nmtraj.c
index 625f7f8f407a6384a96af5173e6ec78ce367b31d..dd972a025126a0e61ead44dad8e42f1168dbc469 100644 (file)
--- a/src/gromacs/gmxana/gmx_nmtraj.c
+++ b/src/gromacs/gmxana/gmx_nmtraj.c
@@ -47,7 +47,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"
 #include "gromacs/fileio/pdbio.h"

diff --git a/src/gromacs/gmxana/gmx_order.c b/src/gromacs/gmxana/gmx_order.c
index e081648e5a47e63ac85b98e624ba4e9786ab62d3..409918c90d5e152f34a905ea399f82038c978c52 100644 (file)
--- a/src/gromacs/gmxana/gmx_order.c
+++ b/src/gromacs/gmxana/gmx_order.c
@@ -45,7 +45,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gstat.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_pme_error.cpp b/src/gromacs/gmxana/gmx_pme_error.cpp
index e079ba526d44f8e12e394974ac1e2dc3be1df2fb..f67f4f9ddd3f156d42949980983dffd9dd73b7b9 100644 (file)
--- a/src/gromacs/gmxana/gmx_pme_error.cpp
+++ b/src/gromacs/gmxana/gmx_pme_error.cpp
@@ -38,7 +38,7 @@
 #include "typedefs.h"
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "copyrite.h"
 #include "gromacs/fileio/tpxio.h"
 #include "readinp.h"

diff --git a/src/gromacs/gmxana/gmx_polystat.c b/src/gromacs/gmxana/gmx_polystat.c
index 5e99951784919ed0a4cf68993659f038383666a9..afbcf2353da4a86b52285415b18cf01193a21bf3 100644 (file)
--- a/src/gromacs/gmxana/gmx_polystat.c
+++ b/src/gromacs/gmxana/gmx_polystat.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/commandline/pargs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "macros.h"
 #include "gromacs/fileio/xvgr.h"

diff --git a/src/gromacs/gmxana/gmx_potential.c b/src/gromacs/gmxana/gmx_potential.c
index dd480a914b387f7854f36576ad871d630f6d04b7..4169e478d331eb33f56ad64ccff87ce6bc663cd1 100644 (file)
--- a/src/gromacs/gmxana/gmx_potential.c
+++ b/src/gromacs/gmxana/gmx_potential.c
@@ -47,7 +47,7 @@
 #include "macros.h"
 #include "princ.h"
 #include "rmpbc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_principal.c b/src/gromacs/gmxana/gmx_principal.c
index 5bde12760da3645ef307b1bca5af154de74d8789..1aedface3d1009def02686ae522513cdbcaf3eb3 100644 (file)
--- a/src/gromacs/gmxana/gmx_principal.c
+++ b/src/gromacs/gmxana/gmx_principal.c
@@ -45,7 +45,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_rama.c b/src/gromacs/gmxana/gmx_rama.c
index 13258038794128390b987f4ac84ecda41bf09ce8..eed418d1f8185cb01a93f62ccf48bce1c768c5f2 100644 (file)
--- a/src/gromacs/gmxana/gmx_rama.c
+++ b/src/gromacs/gmxana/gmx_rama.c
@@ -44,7 +44,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "physics.h"

diff --git a/src/gromacs/gmxana/gmx_rdf.c b/src/gromacs/gmxana/gmx_rdf.c
index c611cc21d5411af6f1aa5738cf8235f4b0b903b0..c705891eaef03fd836d2ab972e0565b7dd1d52b8 100644 (file)
--- a/src/gromacs/gmxana/gmx_rdf.c
+++ b/src/gromacs/gmxana/gmx_rdf.c
@@ -43,7 +43,7 @@
 
 #include "typedefs.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"

diff --git a/src/gromacs/gmxana/gmx_rms.c b/src/gromacs/gmxana/gmx_rms.c
index b37459d105dfd9f9abda6beef7430f5595db8fd1..a059824da86ff184abd3cf36428c8929542ab8c7 100644 (file)
--- a/src/gromacs/gmxana/gmx_rms.c
+++ b/src/gromacs/gmxana/gmx_rms.c
@@ -47,7 +47,7 @@
 #include "gromacs/fileio/xvgr.h"
 #include "copyrite.h"
 #include "gromacs/commandline/pargs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/utility/futil.h"

diff --git a/src/gromacs/gmxana/gmx_rmsdist.c b/src/gromacs/gmxana/gmx_rmsdist.c
index 2b3ac376e681404e4a8302c31bee40701360411d..2d6886d2399cb50b6d8a3c46cc24ebed4567e568 100644 (file)
--- a/src/gromacs/gmxana/gmx_rmsdist.c
+++ b/src/gromacs/gmxana/gmx_rmsdist.c
@@ -48,7 +48,7 @@
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
 #include "gromacs/fileio/strdb.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 #include "index.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_rmsf.c b/src/gromacs/gmxana/gmx_rmsf.c
index 88126529c1fed892918fe931fc2c969c28a8b5b4..a00b55bc358080dac23e397ed108e2ad9796354d 100644 (file)
--- a/src/gromacs/gmxana/gmx_rmsf.c
+++ b/src/gromacs/gmxana/gmx_rmsf.c
@@ -46,7 +46,7 @@
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "gromacs/commandline/pargs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "gromacs/fileio/pdbio.h"
 #include "gromacs/fileio/tpxio.h"

diff --git a/src/gromacs/gmxana/gmx_rotacf.c b/src/gromacs/gmxana/gmx_rotacf.c
index 884e591d8c5d20b1f91e3a81d05f14da4ea57855..147122ddd4ec4f5847ea67f48dd8641ebab3b1bf 100644 (file)
--- a/src/gromacs/gmxana/gmx_rotacf.c
+++ b/src/gromacs/gmxana/gmx_rotacf.c
@@ -50,7 +50,7 @@
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gstat.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "viewit.h"
 #include "gmx_ana.h"
 #include "gromacs/fileio/trxio.h"

diff --git a/src/gromacs/gmxana/gmx_rotmat.c b/src/gromacs/gmxana/gmx_rotmat.c
index 05f7e715ce07924be1fefa97da054e456b309248..e0053c9080fb0768cd576967444e178eb305d936 100644 (file)
--- a/src/gromacs/gmxana/gmx_rotmat.c
+++ b/src/gromacs/gmxana/gmx_rotmat.c
@@ -43,7 +43,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_saltbr.c b/src/gromacs/gmxana/gmx_saltbr.c
index e56491c626b7e850fe7033459ab99a7b9646151b..f3667413a7db75244fa8bf4e2d41e2700ac1b34e 100644 (file)
--- a/src/gromacs/gmxana/gmx_saltbr.c
+++ b/src/gromacs/gmxana/gmx_saltbr.c
@@ -41,7 +41,7 @@
 #include <string.h>
 
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "gromacs/fileio/filenm.h"
 #include "gromacs/fileio/trxio.h"

diff --git a/src/gromacs/gmxana/gmx_sans.c b/src/gromacs/gmxana/gmx_sans.c
index d0b64b17651de62b822cc7bb5c9332f6ac74dccd..b2f2d4ea05d2d147e16d926493d9617b24faa870 100644 (file)
--- a/src/gromacs/gmxana/gmx_sans.c
+++ b/src/gromacs/gmxana/gmx_sans.c
@@ -40,7 +40,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "typedefs.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/fileio/xvgr.h"
 #include "copyrite.h"

diff --git a/src/gromacs/gmxana/gmx_saxs.c b/src/gromacs/gmxana/gmx_saxs.c
index a0fe58f6d043c09ed8557c45870fed56ca254c09..103f299e29f235901aae35e15663f315a9f930cc 100644 (file)
--- a/src/gromacs/gmxana/gmx_saxs.c
+++ b/src/gromacs/gmxana/gmx_saxs.c
@@ -43,7 +43,7 @@
 
 #include "typedefs.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "copyrite.h"
 #include "gromacs/utility/futil.h"

diff --git a/src/gromacs/gmxana/gmx_sham.c b/src/gromacs/gmxana/gmx_sham.c
index 4e0989174849d78756772d3a93daa4c4057f3640..2cf340f10bb2d05aa156e24e637119253f6c98a3 100644 (file)
--- a/src/gromacs/gmxana/gmx_sham.c
+++ b/src/gromacs/gmxana/gmx_sham.c
@@ -47,7 +47,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "readinp.h"
 #include "txtdump.h"

diff --git a/src/gromacs/gmxana/gmx_sigeps.c b/src/gromacs/gmxana/gmx_sigeps.c
index d6fe0b7187a24ed7e20f9d886cd22a6ddd75d23f..6241c25dc8b3c349d6cb5c634ba1c0a07e91eb30 100644 (file)
--- a/src/gromacs/gmxana/gmx_sigeps.c
+++ b/src/gromacs/gmxana/gmx_sigeps.c
@@ -48,7 +48,7 @@
 #include "gromacs/fileio/pdbio.h"
 #include "macros.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "physics.h"
 #include "names.h"

diff --git a/src/gromacs/gmxana/gmx_sorient.c b/src/gromacs/gmxana/gmx_sorient.c
index ab037919d4ba290929407d959c7b9e800e310bf5..4cc8c1598c45e13e318c361a0c0372e2115a5269 100644 (file)
--- a/src/gromacs/gmxana/gmx_sorient.c
+++ b/src/gromacs/gmxana/gmx_sorient.c
@@ -42,7 +42,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/utility/smalloc.h"
 #include "gstat.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_spatial.c b/src/gromacs/gmxana/gmx_spatial.c
index 7e881f4e226dd1aff74369953427d7ba99314555..22a6fe5c5ee1d931563340cbac80d07f0f764199 100644 (file)
--- a/src/gromacs/gmxana/gmx_spatial.c
+++ b/src/gromacs/gmxana/gmx_spatial.c
@@ -42,7 +42,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_spol.c b/src/gromacs/gmxana/gmx_spol.c
index d2277e56628b65fd5765aa84cce2f6dad73139dd..280b19e715e502d5a23fe739207dd826f470e52d 100644 (file)
--- a/src/gromacs/gmxana/gmx_spol.c
+++ b/src/gromacs/gmxana/gmx_spol.c
@@ -42,7 +42,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/utility/smalloc.h"
 #include "gstat.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_tcaf.c b/src/gromacs/gmxana/gmx_tcaf.c
index 6086a5b47dd8728f7aa1c8d14f77ec348fc59487..a7dfc8edba6db9b3c294829775ee89d07ce268bb 100644 (file)
--- a/src/gromacs/gmxana/gmx_tcaf.c
+++ b/src/gromacs/gmxana/gmx_tcaf.c
@@ -54,7 +54,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "txtdump.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_traj.c b/src/gromacs/gmxana/gmx_traj.c
index 814dda66eea600709edd5d2e9f387484aed89d5c..92d6e85a0275fb3e28dff77307427a94e4b023f1 100644 (file)
--- a/src/gromacs/gmxana/gmx_traj.c
+++ b/src/gromacs/gmxana/gmx_traj.c
@@ -46,7 +46,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_trjcat.c b/src/gromacs/gmxana/gmx_trjcat.c
index 3cef9b92ea3abf37378f65dc5f571d125a9446d1..e53f59e90aee788bb60000a8e184a8b937440710 100644 (file)
--- a/src/gromacs/gmxana/gmx_trjcat.c
+++ b/src/gromacs/gmxana/gmx_trjcat.c
@@ -57,7 +57,7 @@
 #include "gromacs/fileio/confio.h"
 #include "names.h"
 #include "index.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xtcio.h"
 #include "rmpbc.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_trjconv.c b/src/gromacs/gmxana/gmx_trjconv.c
index 041959c9973bf251024adf05674ce8c292190d32..41d4640152c54caac75699321d1b488520af115e 100644 (file)
--- a/src/gromacs/gmxana/gmx_trjconv.c
+++ b/src/gromacs/gmxana/gmx_trjconv.c
@@ -57,7 +57,7 @@
 #include "gromacs/fileio/confio.h"
 #include "names.h"
 #include "index.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xtcio.h"
 #include "rmpbc.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxana/gmx_trjorder.c b/src/gromacs/gmxana/gmx_trjorder.c
index 98638cdd74456d223cb45afa638ade014014dff3..527439c43236c4842decd1af230e52779ed1d070 100644 (file)
--- a/src/gromacs/gmxana/gmx_trjorder.c
+++ b/src/gromacs/gmxana/gmx_trjorder.c
@@ -46,7 +46,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/futil.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/gmx_tune_pme.c b/src/gromacs/gmxana/gmx_tune_pme.c
index 9090d1acfd6005eec338da81b7aa54ca18481061..2e0aeb11a4f1852d0b1bd722ea208c1c352932be 100644 (file)
--- a/src/gromacs/gmxana/gmx_tune_pme.c
+++ b/src/gromacs/gmxana/gmx_tune_pme.c
@@ -46,7 +46,7 @@
 #include "typedefs.h"
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "copyrite.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/utility/cstringutil.h"

diff --git a/src/gromacs/gmxana/gmx_vanhove.c b/src/gromacs/gmxana/gmx_vanhove.c
index eb13aa1883f0ac107f7afc6c2072ad12171278d9..934099757d8900e7fc525a40828ec284e77db8eb 100644 (file)
--- a/src/gromacs/gmxana/gmx_vanhove.c
+++ b/src/gromacs/gmxana/gmx_vanhove.c
@@ -54,7 +54,7 @@
 #include "gstat.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/matio.h"
 #include "gmx_ana.h"
 

diff --git a/src/gromacs/gmxana/gmx_velacc.c b/src/gromacs/gmxana/gmx_velacc.c
index 72440bbdb0f146db11569a1b76ced583797238c0..d951c01086bc2af4f158067a406b5e1e9906969c 100644 (file)
--- a/src/gromacs/gmxana/gmx_velacc.c
+++ b/src/gromacs/gmxana/gmx_velacc.c
@@ -54,7 +54,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "txtdump.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/xvgr.h"
 #include "viewit.h"
 #include "gmx_ana.h"

diff --git a/src/gromacs/gmxana/gmx_wham.cpp b/src/gromacs/gmxana/gmx_wham.cpp
index 817213c459d51b81faf98a2b30890f73ac0ed258..effa95af84972b002d162ec4153b3f5cfc6d60d9 100644 (file)
--- a/src/gromacs/gmxana/gmx_wham.cpp
+++ b/src/gromacs/gmxana/gmx_wham.cpp
@@ -55,7 +55,7 @@
 #include "gromacs/commandline/pargs.h"
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "copyrite.h"
 #include "gromacs/fileio/tpxio.h"
 #include "names.h"

diff --git a/src/gromacs/gmxana/gmx_wheel.c b/src/gromacs/gmxana/gmx_wheel.c
index 549568317646d9a18524bb85b8c2bfc7b35153f1..cf7477c18b4b828f775a424ee5136a016a7bfb3f 100644 (file)
--- a/src/gromacs/gmxana/gmx_wheel.c
+++ b/src/gromacs/gmxana/gmx_wheel.c
@@ -47,7 +47,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "pbc.h"
 #include "index.h"

diff --git a/src/gromacs/gmxana/hxprops.c b/src/gromacs/gmxana/hxprops.c
index 531aa92c3fc4f6dad9db1c610887242247bc20fd..6187738528a236f5ece5a1b64f2fca6146ed8aea 100644 (file)
--- a/src/gromacs/gmxana/hxprops.c
+++ b/src/gromacs/gmxana/hxprops.c
@@ -44,7 +44,7 @@
 #include "typedefs.h"
 #include "macros.h"
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "index.h"
 #include "hxprops.h"
 #include "gromacs/utility/smalloc.h"

diff --git a/src/gromacs/gmxana/nsfactor.c b/src/gromacs/gmxana/nsfactor.c
index e5a17e5d8b97a4ec9c895c5f7d7bc215c87e62bc..ad1517bb5712357e6cc3b11c8aec19f7f44acd97 100644 (file)
--- a/src/gromacs/gmxana/nsfactor.c
+++ b/src/gromacs/gmxana/nsfactor.c
@@ -38,7 +38,7 @@
 
 #include <string.h>
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nsfactor.h"
 
 #include "gromacs/utility/futil.h"

diff --git a/src/gromacs/gmxlib/bondfree.c b/src/gromacs/gmxlib/bondfree.c
index 0cfdafe0efd374e01cad1fb44eeda5eb734bbf2c..538ee5c5fed5c69c0b2c0ebabd0a4e72afbd9720 100644 (file)
--- a/src/gromacs/gmxlib/bondfree.c
+++ b/src/gromacs/gmxlib/bondfree.c
@@ -41,7 +41,7 @@
 #include <math.h>
 #include <assert.h>
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/math/utilities.h"
 #include "txtdump.h"
 #include "bondf.h"

diff --git a/src/gromacs/gmxlib/calch.c b/src/gromacs/gmxlib/calch.c
index b28411a5dce96514e6efcb4edd442738d523fe77..f7ac04760a54a3495522131d0b9cadc919cec26e 100644 (file)
--- a/src/gromacs/gmxlib/calch.c
+++ b/src/gromacs/gmxlib/calch.c
@@ -41,7 +41,7 @@
 #include "macros.h"
 #include "calch.h"
 #include "gromacs/math/utilities.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "physics.h"
 
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxlib/chargegroup.c b/src/gromacs/gmxlib/chargegroup.c
index 83aad0d9a0b880d8c2370eab466889b074cfdafd..7c588ac832d20f29adde733179a25149c2c4cc83 100644 (file)
--- a/src/gromacs/gmxlib/chargegroup.c
+++ b/src/gromacs/gmxlib/chargegroup.c
@@ -40,7 +40,7 @@
 
 #include <math.h>
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxlib/checkpoint.c b/src/gromacs/gmxlib/checkpoint.c
index 3651f026ee0e1e1c164dbc8310fa53d88cb8cfce..c718cb715197ef4ad3b4365694de0cd9f69701ab 100644 (file)
--- a/src/gromacs/gmxlib/checkpoint.c
+++ b/src/gromacs/gmxlib/checkpoint.c
@@ -67,7 +67,7 @@
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
 #include "txtdump.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "network.h"
 #include "checkpoint.h"
 #include "gromacs/utility/cstringutil.h"

diff --git a/src/gromacs/gmxlib/conformation-utilities.c b/src/gromacs/gmxlib/conformation-utilities.c
index b1e318522f945259161e46e04eed149e52643a75..0fa77c9895913995a583a32fa87b475c9da609b3 100644 (file)
--- a/src/gromacs/gmxlib/conformation-utilities.c
+++ b/src/gromacs/gmxlib/conformation-utilities.c
@@ -43,7 +43,7 @@
 
 #include <math.h>
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 
 static real dist2(t_pbc *pbc, rvec x, rvec y)

diff --git a/src/gromacs/gmxlib/copyrite.cpp b/src/gromacs/gmxlib/copyrite.cpp
index 04012442d7043a1ea5a1080da2ca4c1dc5162e63..6f1c8fba7eb2d11e210d807ccca9f386445f34f8 100644 (file)
--- a/src/gromacs/gmxlib/copyrite.cpp
+++ b/src/gromacs/gmxlib/copyrite.cpp
@@ -58,10 +58,10 @@
 /* This file is completely threadsafe - keep it that way! */
 
 #include "gromacs/legacyheaders/macros.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/fft/fft.h"
 #include "gromacs/fileio/strdb.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/random/random.h"
 #include "gromacs/utility/baseversion.h"
 #include "gromacs/utility/cstringutil.h"

diff --git a/src/gromacs/gmxlib/disre.c b/src/gromacs/gmxlib/disre.c
index f8dd337a5a819316ec97ff47e58c780ffcb4b606..d1f6bd0952b93de3bed8f20c07775507e013c1d3 100644 (file)
--- a/src/gromacs/gmxlib/disre.c
+++ b/src/gromacs/gmxlib/disre.c
@@ -46,7 +46,7 @@
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/utility/fatalerror.h"
 #include "bondf.h"

diff --git a/src/gromacs/gmxlib/ewald_util.c b/src/gromacs/gmxlib/ewald_util.c
index 83ac5891ad7fbac4ea49ad15aeeb8ba94bee1926..013c2f914739fed6aa0c509bd867d9d0e67f5c7a 100644 (file)
--- a/src/gromacs/gmxlib/ewald_util.c
+++ b/src/gromacs/gmxlib/ewald_util.c
@@ -43,7 +43,7 @@
 #include "gromacs/math/utilities.h"
 #include "typedefs.h"
 #include "types/commrec.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "coulomb.h"
 #include "gromacs/utility/smalloc.h"
 #include "physics.h"

diff --git a/src/gromacs/gmxlib/mshift.c b/src/gromacs/gmxlib/mshift.c
index 0918cff50a2d04ab973cd4c9f2e2f1c51351ce23..2f257721a2b4528a9ecbf89b5f1fae2d53661216 100644 (file)
--- a/src/gromacs/gmxlib/mshift.c
+++ b/src/gromacs/gmxlib/mshift.c
@@ -42,7 +42,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/fatalerror.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "mshift.h"
 #include "pbc.h"

diff --git a/src/gromacs/gmxlib/mvdata.c b/src/gromacs/gmxlib/mvdata.c
index 329631ae26e76bc411c26cbfe9dc103bab826802..398d800e4f08047ac2ae502a095cb0f1db7598bf 100644 (file)
--- a/src/gromacs/gmxlib/mvdata.c
+++ b/src/gromacs/gmxlib/mvdata.c
@@ -49,7 +49,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/fatalerror.h"
 #include "symtab.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "tgroup.h"
 
 #define   block_bc(cr,   d) gmx_bcast(     sizeof(d),     &(d), (cr))

diff --git a/src/gromacs/gmxlib/nonbonded/nb_free_energy.c b/src/gromacs/gmxlib/nonbonded/nb_free_energy.c
index fe4bd270fc851f0d23a033d572b5915bea3c95d0..74cd5640efc725b56dec4d93b2deec0c1c2f7eb9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_free_energy.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_free_energy.c
@@ -40,7 +40,7 @@
 
 #include <math.h>
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "nonbonded.h"
 #include "nb_kernel.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_generic.c b/src/gromacs/gmxlib/nonbonded/nb_generic.c
index db837244eae392545f61160b56f6a97feb175c34..8ea9d42ffc28823ad189858ec08ddade60996c5c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_generic.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_generic.c
@@ -41,7 +41,7 @@
 #include <math.h>
 
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "nb_generic.h"
 #include "nrnb.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c b/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c
index 97873b8498bcdde739763c607c905e4e4f0b5976..ce2396b0c47072518a3c7b85ad4a674b7edc27ef 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c
@@ -41,7 +41,7 @@
 #include <math.h>
 
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "nb_generic_adress.h"
 #include "nrnb.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c b/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c
index 6d1cfae43548242f0a0ca2927c2b86e6953ab01b..7e6949c4e98a0da0b28e4eff2a246e80c50d06a8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c
@@ -41,7 +41,7 @@
 #include <math.h>
 
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "nb_generic_cg.h"
 #include "nonbonded.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/nb_kernel_adress_template_c.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/nb_kernel_adress_template_c.pre
index 1b8b0b1475391a6e4d3728d9cfb728b89db960e5..272f33a8b2410fd7ee8b5c573826f6dfa91e86d7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/nb_kernel_adress_template_c.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_adress_c/nb_kernel_adress_template_c.pre
@@ -2,7 +2,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012, by the GROMACS development team, led by
+ * Copyright (c) 2012,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 /* #endif */
 

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/make_nb_kernel_avx_128_fma_double.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/make_nb_kernel_avx_128_fma_double.py
index 7fafb5fc85fc48208041c480836efb6148a89cba..b24fe652fa911e8eb6b006641c6b75e38e7598b4 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/make_nb_kernel_avx_128_fma_double.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/make_nb_kernel_avx_128_fma_double.py
@@ -91,7 +91,7 @@ Arch       = 'avx_128_fma_double'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_128_fma_double.c
index bf022067c62616fdd1d2f2aa219272d108555734..91aaede3fec4dcc253c5f64a682ad2a701d7a409 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_128_fma_double.c
index f698b34c4f3dd44efeb9446cc469ea41552ca86b..60c9bd4a9113ef9b75674f2e78dc393d55e67aef 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_128_fma_double.c
index d2eb26cf935e9249dd9f92ef9402ec631726bc00..8adb4528fb2239eb6ffaeb3a378b0645e5a66d51 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_128_fma_double.c
index 22c36051ba32b07f7792fb16a78e158cf8108173..a6d313463d4ee9990ad25f6e23e9ad203422f72f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_128_fma_double.c
index 85316899170f6ab7edcee4db9fd5aa438ea8a0e1..4dfbe45ade598039cbaba134b3dd86b30c4d2214 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_128_fma_double.c
index f3686bc72b38531ef6e29ae4c8cfdf446784441b..f4e0c00aa433256e69dc8f8a4cb90d6c228ae684 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_128_fma_double.c
index eb036d8d2f9c411bb0c30e80c80acbd8122c4404..67837fd8f4def8203a22f2d31707a0b0694890a1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_128_fma_double.c
index 5b93375537d175d02be6a861b171c78d6a82aa22..b87d922d4256c2c7f4142d1c5aa95cbf275cb55f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_128_fma_double.c
index b5c0aa95d12db04a35129966748e9f11619bb2ef..535d785d136e28745295b3a2737e4a8ee4e2cde6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_128_fma_double.c
index 86b1d4dcb1f9dacae5c59101df4cb44cee66be5e..1193316d9a985a38b0cc9e9f9aab1783281c7f0b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_128_fma_double.c
index d853c4943bf3f1d0113d0658232d7e93f1215c4f..05fda6f30dd0d530db8d8a515b097568ea3c8dc3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_128_fma_double.c
index 95b08e36a02b759259d264bfafce7790d6133971..f6ec7e0d5a8fbe3034992ada0ab78d0f57a37200 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_128_fma_double.c
index 362adfe5b90ddbc6990904d4c9b0e0a8e4a64977..4d8e9a2707e94ef242df8cca0559bfa7f5c10ce7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_128_fma_double.c
index e529ae361aa102e05333d40a36314155506a2c69..07584802d29a76dab72752531070ebf0160e9b77 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_128_fma_double.c
index 196ccdb9808301348b27d7e543c0dd2d2abc9cff..6499b010d7af3236fac5ca37eb4932af4af4c77c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_128_fma_double.c
index 61cb77b514513387221303844502009266035d0a..fe42973525a21b95545534228c40a53dbd243dbd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_128_fma_double.c
index 5885a4e5bd9454332f88393ceb65d4fbb9dc3c83..43fec6d86d1f54b061bb9630a85409b09ce49a27 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_128_fma_double.c
index 6475f6fa339f36a0ece2226081290665e69cbce1..16686e43c963770e888a8e4b55f26d92d8b839cb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_128_fma_double.c
index 171838414291f7a0baca09430097d447beeb940f..a614b386270418fd2010a825fe85ce2f6655368b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_128_fma_double.c
index 7c0815aebd7ad554f75dd2ab7117faf68d8f6f19..a670957d2c6f857997498cf1941b90ed01d61eb6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_128_fma_double.c
index 9d16d7c6f54e27bca0b0df8747107a3d9badda05..d63269223d33e49c6ed7d92d6377cbdc2235d5ee 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_128_fma_double.c
index 5913aeed7e50072fdacd35495d50aec894444956..e8c35d7f29e866701aae8fa65d90ed01f9f6a985 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_128_fma_double.c
index 26ad7e39c12d632832e105d705a4b046b6fc430e..2f6d4507aef97d2b15762e787ff4f970a1eb0bcc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_128_fma_double.c
index e1976eca49897fe217f58fc8fce46773ba55c4f9..306accbc3ccfbdfb215f8120af75282833e01511 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_128_fma_double.c
index bff7086d04a252b061fb3418bf2baa8d7bf4905f..9c3d992e5028f03522fceac188a0f3cdcb35f52a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_128_fma_double.c
index 822018c6520207f1d4220616b20f30ab17f8e934..655fe822d58993cecb1e2fc418413c67a398eaa3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_128_fma_double.c
index dff9b6f2a6fc54f3d1b168a207c626e440b3afea..a523785c70a5c45ccff6ddce5fd319aca37570e5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_128_fma_double.c
index ef55d239e7a6c6e8ded45c17a1f1b64c7c236751..a9ec7d6298204b48975b4d7a93ea958cc783036f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_128_fma_double.c
index 5e3bf0be390bc3947b36729b2fe0fb6a5a9c2fdf..3e7055bea75b197c2d880f42f89c26871c3e8049 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_128_fma_double.c
index cfaada4b661e5038af0769ec88b1da52cedd2b69..b4856962752b7813a8eaca4e1ae94d5c1012183d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_128_fma_double.c
index ed221ff747ea9f79f668008a2060422211b97aaa..257aaa8b4d297d7ec4f51514408cda53d4fb4ff1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_128_fma_double.c
index 081b7475d99bf8a2e1d021383265b24ddbe3f59b..507f51feb5d49e70f6480fd33eec3386ac576bd0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_128_fma_double.c
index 7250c93ea2f5fe2ade65dc0a24389c0d1f2f3772..318dd276b09c83bc4330340b322ebcfa3802096e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_128_fma_double.c
index b95e320ca510ec5183b1aa1e5a3575e2fe84bef9..461101eaa404af1b493540fbd50b728fa20fc683 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_128_fma_double.c
index 112077ef38d67e56ed673ada5cc05be54192fe0c..eb2a50a2dc7d19de766242ed63e6c383777c0690 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_128_fma_double.c
index b6aecfb31827aea5ae476b598580f2365fca7475..e7fc575612a0b867c70cabbc5c430142755eb738 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_128_fma_double.c
index 83318fbf0a22f0975da965622a882960edec7e32..6365703729b7665214417907ec634823a38b34ea 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_128_fma_double.c
index a91e64d59e9bf2e16568ca844a8e62e9a67694f8..04b2c4ba2850198130edd645a97dd68274934991 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_128_fma_double.c
index 01a4a3051abbd28af6f44592d21591041ac1a0e0..705bc711ddd6d18d8bb52556b5152f8f05fa5615 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_128_fma_double.c
index 95b8dbebf0d50bac8bb9dc490c4e59167bd62452..97a2e71eaef35c3bd7d1d02477bea0b01f351834 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_128_fma_double.c
index b2f5e69ee91261af4b2df7f9a74785d141a0995f..be499ac6403b4fc8ba4b298a669d82958d5863eb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_128_fma_double.c
index 47b4f8878430aeac5b1a96baabc70f92cf9f9b1a..f7182bc5a12850adb8c6e0e75104c1a068494676 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_128_fma_double.c
index 23e9c2325143be13324782e33a8975c3139a4eb5..ce6629d1eeb02cb11cf4413fb463f29022a00d31 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_128_fma_double.c
index 4e4459f3c74f639b881d7844e98258e231572ac3..afb9558a469c5ae95a7d033f85c4691a2d18626d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_128_fma_double.c
index 28360b4520a09e2b629cec0093bb3a73afa53f2d..6f0b00b83acf56c5c3e856d3c89a86fca642a011 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_128_fma_double.c
index f30ebd69549ed87c925a2c6f619c065e50bf8efa..f62ec03d35771f0628729fda936bad2305a5e2cb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_128_fma_double.c
index 70c364afd23f677fbde799347f33d669e396e54f..e148ad8d9c975b86e02f01d281634ff7c75405a7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_128_fma_double.c
index f34fb967281d815105beb0c5867b64e8595b464b..9927aa02db94fe24b0e7fdf5171976de9b2dd175 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_128_fma_double.c
index 645a6e06c0881c29791bb0cac3edcea9331fea65..7e5c0c0bc72abc2bf0af1c5569a429e46c6a55d8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_128_fma_double.c
index 1782e8e47d36501992d26e2226f9ca4718a4d78d..4999d581f2e95fe1298054da8ed5f32f299a9c3e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_128_fma_double.c
index ced7a6838df9a3cc071682914969163008a0061a..fa4214336439eec37cffc28b3a0d353eec6fe866 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_128_fma_double.c
index b9d08db8ce8bca042974f1ca2e3ff56d90c7deb7..f7fbee7cdf0720f7c6059e70aab672fecca1c245 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_128_fma_double.c
index bfe1fde40256f80571038eda3d00e6603722baac..dd715d5e0727da0803be98a7bd19f85443373553 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_128_fma_double.c
index 7d1049f0e0abe1d7224f819b4a6cff3bd540db5f..5c3bc52a21aa3d00027beedbbdecfbf80de18f4e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_128_fma_double.c
index 1a2993fbf0a4c7cdabc67081166fc9e9ae38c1dd..81a06c5ebb5dc6faf6b023e03b19f61b3f5a39c4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_128_fma_double.c
index 87578cf70001f85101fe2f4f2a7e5c7d4e0ad59f..0624787d5be6efcddc8caf0e040292e3a7523e04 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_128_fma_double.c
index 01c3782b922ee625aeee6db61776c38b54acce53..5483aa724cd82cb5e3bf52140a8f79ceb14a8c42 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_128_fma_double.c
index 8f34d4f732cdef957dc7b0f40e106aa6011c398d..f82a9f86f51f8b1226efce49824a422ecbc270c1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_128_fma_double.c
index 48e1c06b94fccb09518bd063afd24d1fa70bd1b4..a69180e14bec76b6888a7934ccf0f889d0f0858d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_128_fma_double.c
index b7c78af992795c0d595c56c91b79a19062acc1da..b634ccf70f7b51a88eb7e4326724678018e9f378 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_128_fma_double.c
index 6cece91d20e25279471ac2804bf6275acbebd177..ef988bbd7fd9cb3dc92639add7b95632b033d31c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_128_fma_double.c
index f160968b92ad29df508dd944f5267278e27e9835..11f0b1a067193632663bc6f2ab21dfafc0f91456 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_128_fma_double.c
index c39382a2cefd8753f48fc58681170ac910d9a941..50879ac43d3271405acd4cb961d361c807efe61f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_128_fma_double.c
index 6f482e01427beef25732dde65c6c40d2f0060156..57a0c0ab20af719debe55ef74998705c18df94a9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_128_fma_double.c
index 27fe4f1353877eb526eab8ea81715a124406edf8..6eedc7dc78551c10de3e9dabede21f8925382633 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_128_fma_double.c
index 26774a478a9b560582ede5a17ffb6ae599717ff8..ddc42866bec1e9b3d3a7175f285a2ddb5a46c003 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_128_fma_double.c
index cd96fcadcc73b906a93d5a845cede252427b753c..b7eb95f9182c1f3cf849b4861d04c84d5df569cc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_128_fma_double.c
index dd6379b448ead0b97ce8d75886280aa40a060f9d..54ebb907504e1773b532e8b45656e9496b6607b1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_128_fma_double.c
index dd4ef28fcd091ca0ae7fdff67ab234da6f861d95..1978667a1695c00396b93fb3b88ecccda2d1d210 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_128_fma_double.c
index 7c76786e0ebc316c67e79f80d4f5617c393868b9..1e474bd528052a94924efba552d342a7a3d8c4da 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_128_fma_double.c
index 19c228c9541b6c8286eb12a0ad15b043c7e4204c..93a1456a8df5c4715ab661ab5535d0dad5855dae 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_128_fma_double.c
index ab0958de6d70972abdd90d5ddfaff204970e8788..da4996fb0bd05904696d5d82817f4fc28c2b4673 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_128_fma_double.c
index e76ae0d1215732d5755d840b47ee9f217277ec02..6c853f40f20b50263d1c1caf9176331a1b28de07 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_128_fma_double.c
index 1d8d003ed36216c89c985147a6e5d501decb934a..df27d6d02697c40558cfc562e4f99129476aed85 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_128_fma_double.c
index 22279514b44f0b157e9a7d5c0017730548851f62..34ab36326ceac1d38c988f48c7c54226a0017b92 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_128_fma_double.c
index 6a1230f05de17491dc357e006fd0b310e9241540..ae0e508a67fee0163082761edafde4ae4ee92f8d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_128_fma_double.c
index 7500fd8fec11abd751a4c20dd9bc42fd95dcbe28..761a1fae366e01480c432b4dac92a3c8d5516a00 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_128_fma_double.c
index 2584c4efbe837ce3040d8ca4899c11085fa11ed4..283533fec0ad6c74503410f17928744c5b98b1f3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_128_fma_double.c
index 7507b94471c71f59938005c4c2bff1547bb0aec8..93c3d88827adbd9a360001bc00cfa31e3d3d9d88 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_128_fma_double.c
index fd4c323f019a30592f4c2cb523ddbb042680c118..7e1446104a1ec2ee706f5b1c370861b4939e0ac8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_128_fma_double.c
index 804b0f4103eacbe4c7c267f74941b04f86e33efe..ff06899bdc12647b1a316ed6353a1ca6837999b1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_128_fma_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_128_fma_double.c
index 121474ad194776e12215c71457ac6f5a653bba7f..a17e1be0fdb0312b37247fa34cc67e97541593da 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_128_fma_double.c
index a033b9b39effd5efe67ce4b3a7b486c4dd2a3bc2..bfa63a34c88cd85e564423adee5929aafd762bb0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_128_fma_double.c
index 8c1564e05f88cdb45b8aec43bb57a1ad46f56337..198654271dbaecab0fc63222945b8f83097770d5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_128_fma_double.c
index f29e649ba5d35087fac590738ce2156c637e7428..f766f9fcc0e9691893feba7e26784430510676ac 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_128_fma_double.c
index f202a8d3452873b4f28f320389088470d534756f..ee23f8433a934d00cbb152d70e2e1db97adc0a49 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_128_fma_double.c
index 256d739c8be86755905e25c5f7c28e74cd9f35e6..a6d553552c5a793b2d5d89ab29ce0da9a7ac8a1e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_128_fma_double.c
index b563d2ad01141bad92c5cc0dae8fdf8aa5b01c58..9fe5d886bdc207639024fae95a6c2d4c24746c19 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_128_fma_double.c
index c78c3925c8f80b21f7e4534705d5133d93be99ec..3ffe075a77380e863b8260bcbbc2ee945449632e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_128_fma_double.c
index c193c409504dbab0e00cb73115f2750031bf7c96..6a90f34e4d3e2559fd98fea569ad7f54a8e8da78 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_128_fma_double.c
index 75b1cbeb52e1de2d5b073ae01f992cd28822ea06..04bca15807b856b4fa7b8ba47b806b4f97edb000 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_128_fma_double.c
index 81532182c3f36947c2bf03ca860f019dbfda9a8a..4293370dd42c13a7932ca17eb3545b76936ecf8f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_128_fma_double.c
index e44b38bcd37b00516822515b4aa1ab1672b574e7..4744ee59860bcccc7f42cfad3ab3dc468fee654f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_128_fma_double.c
index 22ece2860e219b7a53bc06c8900dc3215e9cdd60..e12159b3431e4b2c266916bef070ee780d3b6313 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_128_fma_double.c
index 25a342709b00c2a454ea1878ba62d5d58ce8040d..97869c99d5cc960a0f2f7af96f4627a2b5477c32 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_128_fma_double.c
index 7d18c98d034500f878358f0dbe581a6894640136..d1bf3a702f6c485dda95c6b28a0597c935f61f7c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_128_fma_double.c
index 9c5c32c0652a034b2f35ac25328ac21fe54fbe09..1a0ac38e92e53b2d6ddda29fc789512198a153aa 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_128_fma_double.c
index ee62b01d9f36149b770ae38094baa912d6f7c696..4e864646925e6badf65182ee8849c814dc963cc4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_128_fma_double.c
index b4e8bd36f159b3bcbf2549b687ef760073a3215c..7f2c88c5c6c81be064559116713e96ce3e30523c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_128_fma_double.c
index 8400742fcf567b17721cfae4f80cefd964550a5e..5921859cd0b0539ad804bcbc6a805c1f4107558b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_128_fma_double.c
index 46aa8a7dbdb074d0948b1e1164bcedf53fbf8108..470175a7c5e955ab9eebcc7a606e20ce620f38fa 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_128_fma_double.c
index 6a7be3e614583495aa1b40caa557b33fc82a12bf..f798d72871517cb3e9d2cba8db3f1ebe744a9337 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_128_fma_double.c
index 538c5f518a9ef86a04a7c22d760d5b51eec9e8fd..28e66f10292398c9fec352990fa7479f91efdf3d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_128_fma_double.c
index 9cd38b549be94369836e77e8582870d3f38ac4e6..59f080e3eaa49ef13d556048a80c5eaf0f0be40b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_128_fma_double.c
index 0b322c4b74a2fd2c1df3ef62e040c225c1adabd2..9242bcc3ea1d7486a84ab32e4399d06a1cbb0888 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_128_fma_double.c
index c1d31608b46578e1d6538506d3b7b16b12169dfc..c614334a22d4b3cd01f9485a2fdbc0a0436930cc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_128_fma_double.c
index 0849d7d0c224db3a0b470ffd8a5e0eb6a2eebc4f..7367682bb7c66f0ee4f3e15ceda96c42ff12f4ad 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_128_fma_double.c
index 7b46c68aada996e539e8afa90f4b60d38fd864ad..ce52cf257c12b3cc1083cf3c15aa2825b0d2ecc5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_128_fma_double.c
index 7863ea8fa9e498868baa7e59d61f3a0d1c79ec68..32f5bdc6e7bc01fea1ab55b4bda3ab24e9908299 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_128_fma_double.c
index f60d0a0651d0636cd3a3cb6d3a9b987a0ce5f93f..29a2a94acc081e0a43c87adee1de5dabf3189a4e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_double.c
index a1ae161c26e105efdcafe975ba5acac06bdafa22..bff36d84a6a9f8a78201f3d7012c5bcf003ce654 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_128_fma_double.c
index 5bf635fa4b65029738443f3b543854ece4a041e3..4b82febb0cf3fa54f67c1b748c5b9bb8c7103dd8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_128_fma_double.c
index 47e44d03efe0fd719003bda2da4745b73d2e7f50..8e136d1e415674f3f82d6ca2717b3559ccabbb9e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_128_fma_double.c
index e0ea14ce343ee28210619a494d6eac2daa64721a..a31ec611989d19b0f57dc4353a03afb76d029375 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_128_fma_double.c
index f7132eb8a7438c4598ecb9af12b15a489eaa1ddf..1d0aa7840c2064ad54e389a77da1256116a86787 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_128_fma_double.c
index f9c8e92cfbbadec3b5909748dac37973729e84f5..9762b5269ccd73e6575af2a46f1b55ef017ffb29 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_128_fma_double.c
index 5332a35599062b29323e313461c71bbc52223971..372cddf1b36549a7341e4a944e01e4a576788663 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_128_fma_double.c
index 9234c00319fbd8338f78eeaf6a923a0a20ce2786..0210dd451253c95ca72ee5d9144e28a82f0a5605 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_128_fma_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_128_fma_double.c
index d4aabaf553ccd61804ed41633d9bbefc67d53912..77ff98c22a1819419c635a71ea70b83f0ac84005 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_128_fma_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_128_fma_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_template_avx_128_fma_double.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_template_avx_128_fma_double.pre
index 55c229aa90095374da4c52a60bf73fc0d6dc202a..12561f98a406338a84243cc964b48b4b73bd46cd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_template_avx_128_fma_double.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_double/nb_kernel_template_avx_128_fma_double.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/make_nb_kernel_avx_128_fma_single.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/make_nb_kernel_avx_128_fma_single.py
index 7a3f21b02dd6446d9740278a76a17b1bd5aacca8..92b7b72a73b608186237aefada6b59792798f44f 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/make_nb_kernel_avx_128_fma_single.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/make_nb_kernel_avx_128_fma_single.py
@@ -91,7 +91,7 @@ Arch       = 'avx_128_fma_single'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_128_fma_single.c
index 7936369a7e8e4297bbdc202132b9f93954002bb1..31fbf5de748a87aea318d76baf59f0cb5371f642 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_128_fma_single.c
index 56b8e0317c5fedf50b2c605f42e39de49214bbfe..209908066827c328cac266d5c696ae7658fd8a1e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_128_fma_single.c
index 4577d81b1c1f5467e8c7b3d41feb98ecedc2d6df..260549617054ddcc61962a03c8526bfc49ddfdb5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_128_fma_single.c
index 727393eba37280384bd5f575239646c2da611a89..d59dfd8fb5213cec7f95aa905610b5ebbce24ab2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_128_fma_single.c
index 2a3a5254d138427bea33ec78afedb7ebc3101cf8..2be1250fb0cd45b84d7f25c8d5bf195ed82f09cb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_128_fma_single.c
index b734789b82615299a5c7b05bcaeb0d75c4d786aa..9ee0b6f1285c77c2398135fb8b5bfc67a6735c81 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_128_fma_single.c
index b92dacc6633a71324da7c4a22c47afb12d2febe4..b80a8b2cb991c0320cac9f8f789379b8b45663eb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_128_fma_single.c
index 0909a3368e66c815e245ff33ddb46052e2880291..1e08a6c604bf3e9b8130eef516339d7d06981c28 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_128_fma_single.c
index e8dd4929102051723031a2663ce842bee194f1e2..fd17f53e17c52cf4f184b6acf46a28e6fccc41ac 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_128_fma_single.c
index df97c46a9852f3031f13a306b12de54d6f6fd200..0aa637e484f0a1789cd225610d87eb9e9bc93c78 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_128_fma_single.c
index bc1b5acbedd3a6ddeb90432f31a19d730fc3648e..d74955454394174a1ccac8e370d386780d373c39 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_128_fma_single.c
index d5f8c084b2ac82cc3ff89b55991b0ca8448e2fbe..41f7801948e0e021b1c96491c5c76840e0075c38 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_128_fma_single.c
index e60b6f933383bbd164ba58f3f8476c97007ffc9d..3af963c0242ca10e90a87cdbc82bf2f64ae1ec98 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_128_fma_single.c
index c2fbc84f0927037b099507a3a6df453fba41fd18..ceb86a126923bfe3f1b857543779e8e3eab21fd1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_128_fma_single.c
index cf026b56fcc7b5486d0e0c33063ff302ec14d25f..6358446dc8d3106b2b981537e3d647d1172fab27 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_128_fma_single.c
index 32a3fe5155c08a15c53d6ddb341fd1aeb703a3cf..cd260fe7b0e657d2ecb0e37b8903238e60e22039 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_128_fma_single.c
index a1d246fbdf7166d759c3062a536166b8fb816888..ac4bdf677f5487b407780b4cf9ed104c5ee98582 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_128_fma_single.c
index 26160b863dd4d91d55720ad7ce2d6f3bf660ce25..6745d1c6d1c76a63c8fe918ee827c279ce9b806f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_128_fma_single.c
index 5551b67ada57f87b2f9709d8aaf7fb03034871e0..11a783794a1b9207c616e09ae1d8b9442bc98edd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_128_fma_single.c
index fe7be790e0a664ba3f06a928862163f1f61661de..5e7ca560a0a511fe4196f7e54159f8ed907a1e9a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_128_fma_single.c
index b67807906c3e1903e229562b1b6e57272e57d1c5..be5f3916f52f7bf6060c3b89671db238e1ccebb1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_128_fma_single.c
index d93bb9ac18725231d7df070e69719a464067db90..038680b8f6e2222ddc5d614381305cd416a2ca3b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_128_fma_single.c
index 34d8fb726295b1b20099a40fdf9ed5fef619dac5..671220173fe119a6da60441489500c06d9bd24bc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_128_fma_single.c
index 7dc3fb10aef58f7c60ef34ed7dc61957db4417f3..494be8bbc59063b94e9dc37f962fd7b9ffcd4934 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_128_fma_single.c
index 5c4778e81fc3eabc0fecb80dde9330d1e8a540f9..6b17acd41b6b61707edbba81d0c1a197384718c4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_128_fma_single.c
index 9f4c3c72b3e9520c1bde75b3029f991300128457..6c3b149794b714573ab40024d1d811d1de9a2ad0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_128_fma_single.c
index 180708d08322e79da80cf25ddf1f15e55930fd70..714c263725729324911c6aebd2cdc20094f81d6b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_128_fma_single.c
index 1f99542da43b8c66bf13c89e34394831e7d38776..5e8df1e2c73d3f62ed38e6914eb3a0e640ae45b9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_128_fma_single.c
index af140ef843c6e99a91f6eced8c64bd50fdab1786..ec2417ae93c106835b6db1db60ce149b23df54f0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_128_fma_single.c
index 4aaec9eb0aeafa2e10f561ddc437bb32a689d43a..d816bbc627fb611b87d09b6312f84e9d5c4e701f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_128_fma_single.c
index b7c011a13cfb0610c4221072da981e1d0f8dff95..4f5e927e9042a5629cc4094cfc60dbf3f659bcda 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_128_fma_single.c
index c699fc19bdb4424347adca9ae16eea543ff6de45..a8c88fdb90f9711d529c4291603c939ba5f65568 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_128_fma_single.c
index aa85bb3985c57cf1580d31d4b27a94184eb02650..29a2cf2ff073285d0867f843a37077a341a048ee 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_128_fma_single.c
index 15ceec75de09b058e277d6a5518253473213e9de..65693955c474927efa0adbae004dc1f53024870a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_128_fma_single.c
index 078b9f7274e229a2c37c4da42bc083d5a6f0418c..846aa5de8078698c0b46dc487aaeb277384ddcac 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_128_fma_single.c
index 662d10e473455bcbec171d0e8d3fc891e58dc571..a91c2f3458d551d1c0245899b3b3aabfec95e133 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_128_fma_single.c
index 5fe79d5b060eba2bfd1227bd90367e256ba106da..908745c2fd004572ae8c80470715db5c32775502 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_128_fma_single.c
index 79519b9929d644cadfc455fa39004db7bd6fc3ca..aee2e9333bb3579fa56fe4bb6cc59e1c114a4a92 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_128_fma_single.c
index 4dc56e3304f01eeadab26c864aefe490f24142f2..5d16f0df94ce9080dd32c51827db3ee6b75433e9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_128_fma_single.c
index a9ab48691365d3eb4bd90d81b8687eb0bdd68d86..0a1581c8373ca8767855a47d8895d8970a591c82 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_128_fma_single.c
index 17de0d1a0a609c75098cb59fd671acc6e1b8d13f..a2f4429a37e47c2ff82d11bb2a6f94775af32e34 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_128_fma_single.c
index 9fc241cb2cc0194a6b9955ba8b9539b6db0450f3..01ec11cc91e1a4df0b5d246c8bdead85c8104363 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_128_fma_single.c
index 32a2e0ac6a0f10d7b3eee6019712d08c55702b53..4922e468c5b104c25cbfb8b85a980dfa5d81c912 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_128_fma_single.c
index c5c777b8c4db423df7d0c34590fff55b5310c2f5..7e65b9ff1818367e84f072281e6e024653394c30 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_128_fma_single.c
index 19b02e04ef3463fd60399e58a83b852cbc36e35b..b990283383ab177e71db922e7f3530c259200e53 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_128_fma_single.c
index d0a39f9a98000124247bc542840dfe0ba3b29c50..35d9e43445de9db0bc666f197ed6fcfce01f197c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_128_fma_single.c
index 7e80412b6287a906bdefd7b4d35c6e7ec7923edb..9e714076020be46b585f8922ce7a52d0f9b58e2a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_128_fma_single.c
index 083ef00bc70389135bde9e143607eba0a1d116a8..18fea407161b978e3261e2fd31cebf076033404f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_128_fma_single.c
index 869843187a033b68b103c50391fbff47862dfd7e..dcf82e89fec1c4fe3d001654670b7bf32d6a5338 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_128_fma_single.c
index 4f5472a651ca8ab9e8b9ed4cb30a1a5a7c16d87d..42ad98d7d3ccbb2c1b26b70909a71abefa7e682a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_128_fma_single.c
index f9f7f030b1f969df73ff3ae5a5a674d3074737ca..e655f5da9214c8593a1c5123c7701cfca7af56ed 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_128_fma_single.c
index a49cffdab1a0d93ac1e72081c1162031653fbcd6..a0cc6211018c67da92b8b5557b06136eff53a3a5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_128_fma_single.c
index b4352bac9a869950dcb8234784b5bb54082141bb..19978c788137abc69e63a000312f0c3290a96f48 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_128_fma_single.c
index b6b1d575940e382b556b5815bc275a850a468f86..a40fe068534af911a03d5c2780d19e20f1d25b1a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_128_fma_single.c
index 6c080d32e23bf28a5a70cd5ae76553369e52ab10..bdc5d9ddae8e04ee8b85fdf1650b945fc531a995 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_128_fma_single.c
index c2f6a4749eac42f0d409a6ee9802e5ad462f438a..57daf71d9c31d207a1e70323991b74fdee8ce65c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_128_fma_single.c
index 6a149dacaf7bc716a52d66dfaf343a92a6b6cd85..1f78ac80ecf631457d87cc0b69d693c0b29c5de0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_128_fma_single.c
index 16c994799eaabfe4ef1bc5c0a3cb887ff2aea16c..7b0ef75dca60698ca65233a074ba16a021eb2b30 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_128_fma_single.c
index ef6c0135cad786659dd1fdc7b384614c8f658647..c2c511f7ff94587f78a72ce6c84a32bf5015461a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_128_fma_single.c
index 3fd1520632e5fbb5464d0528cc5ce49899a134c0..4d77661291ddcd87bc827b2e4d9e2f1999aa2c2c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_128_fma_single.c
index cd5354afe0899560ce678cc9a9335beaab224d3e..82639718ce5b7b21f530a363faff7cb1738e750b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_128_fma_single.c
index 8d217f6dc2c48565d16fc7d29976da550ab27293..9a769ad86530bdc554fa7fcfab54bde5c51c9207 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_128_fma_single.c
index 51438bf45002f12afaa06547a559632ff95d6c5e..ddbaf7a26a42b82bc4070b0086c80f7524d6d691 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_128_fma_single.c
index 32025d735a7a1227561e6205c2a172a86540a1a1..3eeec3ac5f8a3eb689d54d2f25ee51456b4231c9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_128_fma_single.c
index 49c8dd6af17323e3e9912268813d4efa216e6247..096837e4fe6957c7bfb5e9d2ec7d53bc3c467a59 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_128_fma_single.c
index ffa3737cfe1228bf212890758b0392fdeeff046b..a69724ea0907f0b04559c29ec53e420a2885935b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_128_fma_single.c
index 3f519a1d6898c0690d66d257904367bd01cbc4d2..a9abc8b5eed4fce814e5ba41361d2bbd25c26d18 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_128_fma_single.c
index 2fb099d2f3cc238830a3ca3bf0e477e8881b8f93..29300fcb1df7aa954377807a92d15686094a7f89 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_128_fma_single.c
index 4d80378132bf46db12e38c7026eea07c1cb4d252..8f797eef168ef52a9fccd1a45ed171b3712988b9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_128_fma_single.c
index cb7fe1e2a9ea2a87087c2259b621c9ad53f3e600..fb0e142d92eb1f5c760c51c5c4c88da8fe0a97da 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_128_fma_single.c
index 78689851b55effdbdc4c130c046e75adaf66d8e3..a74c05fa681ec605ab9cbd565e5c411493bba751 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_128_fma_single.c
index 5473ec68ba6f6497a49761942285c34801734454..c3f1ea7198a1a69240c9a13723d745a43d1eba9c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_128_fma_single.c
index 0301a29bb1cd97e8ffc251ad0d05b7071ef09e69..08bad5192533acf195d885cc6b0f6dbffb914442 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_128_fma_single.c
index f44b00860cf44e6b58875db9a32cf992ed36c87a..e65934afa93898653071d09f05930f9cd9a19732 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_128_fma_single.c
index fddc966f586651a2144b82d4a08c719fdbcc2ddd..2468ef1d01c86931a4ff55e18e2fd47bdbf69921 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_128_fma_single.c
index b189dd5db9ab54de5eb97a3fefbb6622d28eeedc..40707fa6dff88db7aeafe0e0250edc5e6fd381d2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_128_fma_single.c
index 37d60b40d5ae5b9298e37bf61a1e898140a2bdf9..1b148f9da6f5a79be3e6acdbae3c8249709d9af0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_128_fma_single.c
index 5fb11907b2508bf5f4fc4151e262c908267a6b9e..eeee62768e6afd4da6047730ae6db0972c432c54 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_128_fma_single.c
index c40a1961b6670b3ee381424b99210755cbaaffa1..b1dc454536703348affbf4c49a74dbe7aa4297b3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_128_fma_single.c
index 013daecc9644d723d9e12f4cd4d95bb677298bd2..f8b0c129b094a701d53610e97304f119f51e1279 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_128_fma_single.c
index f2f2674e1097a3c10d0430b01b9f6c652e459912..68ade46d5004a1d77e6074b784086fe0f5340391 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_128_fma_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_128_fma_single.c
index b71b05a7c8c47ab765bc42add4a11a3fce269247..697a0cd5ac44c3b659cd9294b0bacc1d51776410 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_128_fma_single.c
index e3e216e167ec5cf8bd3bd753d5a2ef82b91d9c71..2b28bd4b787b78e7159a63a9a492787681698ae3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_128_fma_single.c
index 3863582a74ec42ab4e5c77469a30505d8c68231e..fb9a627234d7b3b7d081a4487f1dba4211a408c8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_128_fma_single.c
index 94a018d582c68377fcf227ebeafa42367e9da7fc..483052b94d6548f688d1f81450965ec545955493 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_128_fma_single.c
index 21f1f24ec355174feb6166ee08099c6320d8f6f3..1a3dae34826c2f1c484f97d6dc5eb956f0b63c41 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_128_fma_single.c
index 8d566a3910c6464453ab14c160514523fd08d1ef..563fd2c5dbeeac53af8154b091940b7bbc3b898e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_128_fma_single.c
index 86673ebd913a15acffdbd23827cdca3cb785dde0..a834819a5eb7b734a1dc0cb1a4c66a04de4743cf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_128_fma_single.c
index 964f851f45da394fc818457a94a0969646feab5c..d7f07f435a797cfa6c00ac341ad82ce187d4abfe 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_128_fma_single.c
index 5f7eae8718b46cc815176f251054c3588fffc784..e817c61f4eab9ea5e662af38bba2bb3146aff31c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_128_fma_single.c
index adad55ef83adcbde71020c72c552c0a5c118eadb..96e67d227d5b2b7f67efeccc7400a06534a90648 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_128_fma_single.c
index 9f6890dcdfc94849e6545bcefc33d91543cb80b3..2e5579c88804119a36df0e5da9672361a82880c3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_128_fma_single.c
index d0d8c317e80e7c87c362f555c644ecd2bb0cc0a6..98b2a7f26694edce139b09ee8e820f9114d89533 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_128_fma_single.c
index f4f5739cc406e7d8f0fb9428cf5bd408f0c33e92..1772d7e73f14552ae0901ec6ca2e2065f1e601c8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_128_fma_single.c
index 10916f57e4b7fa39247e1fb14f498ff396d95d36..fa137e351cb6da41fadf30f4f9beca93eb766a46 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_128_fma_single.c
index b8e71a88b8f3abf300c335f3bd6a609a47e1da75..1bc96c5001da7e26387d1ce4628ce108722b0832 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_128_fma_single.c
index 56396bd3f73bceeb3367fa433681d572f0f9ea56..74a51630592bf2c7b3206ba54ccc53524b213484 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_128_fma_single.c
index 8d4f5df8321d96e46bc649bfe3b2e6b2bf7afe7a..cf0064c7d9f28405254a17db7cc0d03b6d04c0f6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_128_fma_single.c
index 28f1ba9301934ae6b818db3e815e0bed8b5a5bd1..de452ad99962ca1d94e4485ca3ae71acb0d572c3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_128_fma_single.c
index 6bbf310e9615b72f8a6cbb7e807e98be3c7a908b..d41d1c12f6dc775ab46384440f8ec44b47393692 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_128_fma_single.c
index af6dd21bcd0aecfa96bf17ada5484011d4c7146a..4f14c165da729916b3e84779558417778d20d073 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_128_fma_single.c
index d984e855769abf16ecaacc2e0d4523a10925d7d7..84fa6821b7db3adcc469ae965177b0fe41fc3504 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_128_fma_single.c
index eafc5604c667384b2034dfa586a44ff90dd47a8c..31bb7c393ec6622970a19175dc60655b9c3ca42a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_128_fma_single.c
index 693c9834aa6029ff3ca3164ed1450b3ec58c0120..d42103c46ead7911f5a8e18562c0d714584254ef 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_128_fma_single.c
index 15735f48fb7bf88aabadc9e43a3d9af314c0aca7..c12fab794b80b1a64399bf15fd798afd21ff01bf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_128_fma_single.c
index b38e9d19096bffc61a1b418b6b94f44ed6d1982e..42e7b4100feee8db5478468d63e3fcde521b8f13 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_128_fma_single.c
index 65220a606c8f565d1c42a6d892523b888a0862d3..55ac1e5c0055ee75b4c4591d1842629531295653 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_128_fma_single.c
index 07792c61c26da89ab2d2b9e93361fc74fbca8bb1..f51d7ea4099e552238342d775d4daa17f72c901e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_128_fma_single.c
index d05265d3431cdcc4827daf1de54fbe76c8cf4f8c..212db504b8173f3ad503ca8ad6af36bb9c3de224 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_128_fma_single.c
index 634b8d71dc5d7e6a66dc4281796a1f1155ca7db1..2403a28e81be3a03158b2c4ec7772861053d6207 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_single.c
index a0f7938233a4a8431b308150c6cc61546d9a25d3..a0425c92bb6a029c41650511ee25c298156ca504 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_128_fma_single.c
index 5b2229037eced9aace4bde5bc88910ce43ac46c2..5087418806b1b3864cbbef0e28db91250bccaf25 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_128_fma_single.c
index 383f0b001e708b5617bb9918b83b38196c17fdee..96b528eac64e813e373605d8339ee0772aca0c68 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_128_fma_single.c
index f657b9ab9fe35d4db79e428edc9a5d9fe0149515..1b641791d778dc3b7a8478384732e37d20aa0cab 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_128_fma_single.c
index 253d0433d550727256eeae3119a603946d1fd31c..aeeb71733acd8eda4f08099574956a773c068bed 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_128_fma_single.c
index 59bb55e859f141382d4743e9ff541ed3a6c373ce..f3c025f11e5cbf0038fe8956a55af47cf0a46e62 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_128_fma_single.c
index 1ec202e3dd7de383642304d1f12d6d8cdbe92b29..1a71c569fd2c6b264c5fe9dadc9d4d8ecd8746ea 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_128_fma_single.c
index cb55c27b99e3ad99b105463d527422fcbabb8dfd..978ebfa365faa63d00b590b02be1c8140766d585 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_128_fma_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_128_fma_single.c
index 5b99471998b774daf4c2189075f44ad77e2c763d..134bc211a37aabf7b8902878314b87bb009204fe 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_128_fma_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_128_fma_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_template_avx_128_fma_single.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_template_avx_128_fma_single.pre
index e2849dc7545204c7cea122dbe189050760c660c8..1922bc77f2db299e88c2624672842783b17d5459 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_template_avx_128_fma_single.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_128_fma_single/nb_kernel_template_avx_128_fma_single.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_128_fma_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/make_nb_kernel_avx_256_double.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/make_nb_kernel_avx_256_double.py
index 0b0bce00dcd134b5dfac74344d2882730bd936f4..c19ba73cc3c916c25cca8d19387ebb2f5f0591d9 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/make_nb_kernel_avx_256_double.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/make_nb_kernel_avx_256_double.py
@@ -91,7 +91,7 @@ Arch       = 'avx_256_double'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_256_double.c
index 340aeb68e625e9034f0b810103afeeefa3451ef6..886f667c5d143b3cd0ec1efeb955f07a20a3d178 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_256_double.c
index de8ed6af081b05234a57215e7f8e99c1c3d9cf20..147a0cf6b2caacd075cd74adeabd538cf3bbf6ab 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_256_double.c
index c25b6199a76c7374edca8927c8f7d1485a768800..d2a2e7bd0980ce52a6c34d33e4fccf39676fe402 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_256_double.c
index 37be66d8f36dd3bc5007a9c3b0f3c2f1b9d44217..27425441772c595ed9c0135be15bd02370f3d5fa 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_256_double.c
index c7fe531f732f05d061cfb976cbd7da678b577eee..270b565077cbac11bc373c1b27d2090a28baf79b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_256_double.c
index 711e1013a88f131a46aca80bf228e7e31f311524..61ddcdbe3f12529cba04fa1dd23814339495952e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_256_double.c
index 65233ccfedd15c9e54bb373e858c384e06642fe9..7dc53b40c1481f9c0163327fb2f66efeb271d56e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_256_double.c
index 96fed27847baed2ffdf39ce906422065d9ef26f6..a442802f7696b50c0358fe2c50b6a5ecd44ca76d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_256_double.c
index 84d469dcc9fc86843a592fd0b8f0068af18cdb93..553cdaee1311e4dc7a5300bf70bf7b844037f167 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_256_double.c
index 1bab3887bc14c11d182eec444059a4abefc2ef56..c2d420aa8a04424fb187376a99d83f309aa5f59b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_256_double.c
index 84604d3199a1bf43dcacace7548e6ee93c368f80..9d667e4d7344ef7753ce19a004783a63c5890836 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_256_double.c
index 1dc2ade34a9e0a12a147315d3d0c41e1fdd8f6e9..19f852dca4a86a480512c72fccf2e64fe04192fb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_256_double.c
index 6efa635230816306e2b6c4bdfaf37b02bd47a323..b35bc4636d7102786f9cc31a63c7733968b234ac 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_256_double.c
index f91fc46f4138c5833f7ed86d5b751531c05a673c..5399c716753c57e6bffced914d596309ec9519f1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_256_double.c
index 5632ae3c1d5880f56bdd35494b7decc3d067b8ce..39be940d85b1bfba589c013059f7fee2e11b8630 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_256_double.c
index 8e3906a52f241f8880284f7f17dc42bccc6cce6c..0f6c8961041cabc544e3f76fb3677ffb7b0ff08c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_256_double.c
index 5be24bf676fe598a85ce293392f32331e64cb623..9204d169bb508b3ed76418a6c47e6e9059b3322a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_256_double.c
index 5546082d08266298df296e22a01b5e5b2f2e0ff7..bf2dd26db3912a38cf6624f5cdd506913e16c334 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_256_double.c
index 0d3edf4a6397908da14e5a6ac16de211c30f2740..047c45acebe8a8a711ad23f3e47cb1dfa7bf9407 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_double.c
index 416bb3e3c2558210f145b5a2e341c6614007faa0..e117a42648bfe1d59fee7a3a4a9b8b9f1977a49a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_256_double.c
index 180008dc93c814e9b9f4d99158d357031de41361..e67b5f0a3352849c01a6f457079e53785c874428 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_256_double.c
index 64b2edf6db90f15bf7b160667633b1116133366b..30992bf37a361c14219aa753d61eef963ca224fe 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_double.c
index 4778fca550d49f778b70b70e4414df89002759bd..c1f15a3301bdc2dad9098e708d409f0709b536c6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_256_double.c
index 502051438d54a9001c605f46658c8686f5a63f5d..de689c9b5f566cb373f2772998b1bcd1167bad09 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_256_double.c
index 95834d17b0400b53477ab190a88ff1458b19e76d..79ef2d7ebfca3030d4048620222a78f5e30b075f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_256_double.c
index 00fca60439fdc2f88fdf8cf63d60b64d76304d84..462186c3a313d9613afd46e028e96bcf653bab5a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_256_double.c
index aa3d3bb33932d1e3e2e9aae16c3e6334f4e47de7..b47c68afa13c6d7a0d2a4df9d4ac9db9b738d8c0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_256_double.c
index 875649df7bfaf1d1b1b2ff5c8d30125fefc713f2..183c423fe4e8b27a0b77e01d8818eb64dbfcaf42 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_256_double.c
index 116958b86d562f7121f4753ae0e33a585e4a5dea..e88fc01fd5ad329c41a83dc6d167420b98da6f86 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_256_double.c
index 4b693b3b1687c567fc8325e5cadf2f05cf861cf1..e1536b8e234d2b3f04f4df0a2114f134fc00725a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_256_double.c
index 61c224c30cd38df30508ea5a0bf9b86925a45242..1cce3e395702166354f2bc9667cee761cbd902b6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_256_double.c
index 6aeb9dd2d7f34db864d785c407954177cc75eb46..828fbd413f35e243976e4e85fa6f7a784310d7ba 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_256_double.c
index 828fec18657ebf6ae046bc517520d0e04c73f094..cc21bdffab90c06090e41e631e5009706845b8d7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_256_double.c
index 2e555c7910b56e43f715e0c31a62c549768facbd..fb5e5da476e4cc5d08003b855c252fce6a0c4581 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_256_double.c
index b5863435b3a74f9bb651152fc432af7114f1320f..47486e003183926fe7426d5bda3431daa5bafca5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_256_double.c
index 48b01e9694a0261cf773799bc2cd2c9a74f68de8..f8867331e4049e75ed232183c6434e63d83e0d29 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_256_double.c
index 29aaf5c3bbbbdcd409a8af74d966785870eae5f4..9a53c32f8d229ebaa5b39e7597b062a8df9720ce 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_256_double.c
index ba499d8ac9cdc0527389fc1302f174e9f42a9c84..4e242c497e5209b6ab5369037a1eafe813bdfe8d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_256_double.c
index 9919bbb0f72eb4b1c85f2c3aa761ff0e58ad49ee..9c0e3c51066fe2077384f53aa39dca61f6547d0f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_256_double.c
index fa7f0c6552cd9606809309351b3cdf70c01e431d..38571dfe7e6d2fe42b23788511bb44560c1eb3d4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_256_double.c
index e4a2c04c0af6ac4f95a579486fae891506b639d4..e4d45b35fee02361045b3b21d557ba2f15d14d11 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_256_double.c
index 74a6d826f3f8c0ed551a61e4946e33f82699fada..dbeeef7800cec736e6f02c933d00e0f52b89f26c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_256_double.c
index f753870cbafab94e011640265d320dd00765b7fb..362571dbe1ff8eaf0944c217de2dbb1e5b531930 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_256_double.c
index f1c783e3c1283be616763126df12ef5d779d9235..b53ef1dfcda542ddb970380fce88422409e41bc3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_256_double.c
index ab1a88f0e68c2477b799ccc227e1f87606b56866..025c98aec21bca1dae2eced471bb748915bcd60d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_256_double.c
index d867fef16ba4f4128288418f265bd27560916dfb..f57b635296970af603d48346362565456fc66e6c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_256_double.c
index 0344952f487caa6145556a319d760e31f6858dc5..76c6aeb1e3a98e14ab5dec06a67fc4c77104d3e4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_256_double.c
index 6c0c5d91a234e4987793e7dabe0d9e9d4bdb6885..3a47415708281f235ab57e7598ab71c6c8e99326 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_256_double.c
index aecd9d878e0002dc7a49349ad75db20a671f47e9..d706362203d3a3c454b69cb89499b3d272e5149d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_256_double.c
index 37f458c1f4d92ec76218a1a03f52d7ba4c5b6a71..8974b0be2e008a641edc302a80cb6602d3a24d33 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_256_double.c
index 44751fb733dcd04b90cab5b12413c2c0644b02e0..f094ebf5c31c30d87ec0456d70b3432d2d081bd8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_256_double.c
index 4d16e92ca1aeedd6e16d03733aa5532e36b3858f..772fbc95b6c3ca9d3794730b58105ddf573e5fad 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_256_double.c
index 9c933ef017b011d9634f537af32813ba60456b7e..8f2fea0524168541d9113f263e8870f949d95103 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_256_double.c
index ffe2fca9ad339d2238db90eb10639f8bfa1390ae..9e7e66919394f679190d0e47f7d8693f46142a16 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_256_double.c
index e1226ce7ad6d19cacdf6fe739f1f8494786ea127..2f747c50bbf5fb321251e4e540594116281156f5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_256_double.c
index c4ff14fc28580f2821155e6cf3b1f3499db7287c..0481c1fe3826686e8a52b6f3ee0ac9f0ad74468c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_256_double.c
index 39c125a19a38bf12d60f94ec020551f20dcd3e03..21b54f4df780f410bbaf086bf44d85f0e679712c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_256_double.c
index 14dab8661d4a4849ff6b6d35eb61eeb556f839e9..5e670d958392d8b335f5cd9e71b17e6ad2148535 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_256_double.c
index df2a149613a86afbfe5df1d4e5133031b3f4379f..2492dcbe841844d11e7714f079a1817f34c5581b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_256_double.c
index 15227870e20ea2b192e99499b8f5a318ebad28a0..3ab6d15084794cbbb45726c79d27778053166258 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_256_double.c
index 75c342198fcbaedd9723c03b577d1aaa9fda511f..4c0c4d088b15080684e41f42c58d634802f0f4da 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_256_double.c
index 651be4ca2deb77d6c8e3eca27d81c1c921956aab..823a5e500eb40d517d54391b16c537e21d40b74a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_256_double.c
index 7760286a4c019fd7fd7b7dd8cf21e69e4857f21d..0b0d28f4df5f41c78d2f4acdedc25c5e3000c605 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_256_double.c
index 294e59768900761fccd05c9b6225be6a8ff44a5c..4b4b140386c5cd9a08d2535f5c310db0ede7434f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_256_double.c
index 3fe41bb7b824fbfff851fdb4b5581e6ff91ad2d7..886a9331e2147e6b7e706b53a00e0109d77d2aff 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_256_double.c
index a8dfcb78009956796c8b674fcc8f1009794e5271..fb0b60a067b50f078bb908467a054b432cb47f8a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_256_double.c
index ee451d705d6f2921c97cd9e786b1849df69f0943..ecc94e5d75e1fd5e59b4136f655ca169cf6fbfc0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_256_double.c
index 1f66e97b84de6e4e062209efbf1292762b73da52..5b3c0bdc555de14f7f18387f465f1c456894874f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_256_double.c
index 58f65a4039fd730e9f39e73aede7fea5ffe56b29..fbd597326b39d5a23a138a0d376bc8fcb2ced488 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_256_double.c
index 6ce6bf0c6d8059540e5865b158409259a410c106..fc0a3bc6176d773d88cdda08a4c8c0c54d6e210c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_256_double.c
index d881351af11d9ec028733bf2df90369876784cfc..06eafb71df30d685953d9bec253165c537c3426e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_256_double.c
index 10fc60b32f3e9e480eca7ffff93917ac3e982e74..590f96d310536d60c1f07b3658237932d6afd9c7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_256_double.c
index 78ca07f261ce392b4566450cb5e5ab6a6d6db152..3a325ce3a8829cadcb5648f5614c141f4b685840 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_256_double.c
index d6547d53f467542b34f96619651b7f94a2689883..74e4c30b227c341fe6884f0beeea6464ee1a761e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_256_double.c
index 8e5dfdbc4cf6cdde91ea919ba3bb78055ea551f5..5da64c5693c0ee3d39d708ede215875efde174cb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_256_double.c
index 118fcf0fa0864139b96e6e508f7a5068c8959d7d..7e8b78e486c22d7d7504ee5559e7833d9a54ebd5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_256_double.c
index 09d93dc9cfa10ed34576782caa237c5636b2fa62..abb0812124af8c4e54177262d6316c5d364270c0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_256_double.c
index b3846211862cc850ada33578d13c2060f204b32d..4c4b5c2eeafdbbd2ba3b2fe5e1d471b2baecb764 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_256_double.c
index 2709c6a2d5c22e8a505f3815fd454913bb1c62e9..86fe4e425a459923b6d850b80327879fc0a7becb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_256_double.c
index a07ba3dd51537ae9af16ea7ef8d540c62bb83153..8fdb0e99e541cff331cab9a396b4c219a9a1499e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_256_double.c
index 9372123866a449ccece551d9ed2949823afe3933..28b6dca8f600f708523843d4ef610074faf5eb37 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_256_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_256_double.c
index 9086637bc24359b989b91d53282e2dd1ab2a8f78..87b158c9b035a8bb255ac7775eaf243288d5b905 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_double.c
index ee98ebd2d4c9d8ac34786b04e524aa4ca864eafc..cd5df143b18a4522d6ddc869284accd4682bac49 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_256_double.c
index bb765da84ce3b976768aedf384f2435fde1ae2ef..012cf572f29fe983b595b70cd300c016d07ed2b7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_256_double.c
index 39ae14575df0505718e4fd9ef4afc205845ee30e..ffa236acd6398f9817bbd4a1d688df99e7e5ad36 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_256_double.c
index c8024d273fbbe42f9de4d1e64dfaab4ba66fba23..c2c817ef6a1d66908cee369578a7cff13550036f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_256_double.c
index 7610b1cdf92781ac03abe14e83b46d05e5d21e8c..d4d9b192799f6e79f40e5382eb67ffaff4967901 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_256_double.c
index 2ab6ab4b4b1a6cb6fdb69b3e133218171ebd4c45..a7aa0df4b623c171ec09d335280f9f519b8d5638 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_256_double.c
index dfcd6bf39104261b5335d575516639e744ac8e66..c7d81f9b76a547ffe94627ed4a2a3a2406d5687d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_256_double.c
index e2bda1b267d33801e66334975634e7c4bc6869f5..1a4a92340826e66a087d425fcb645abcec10bf1a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_256_double.c
index 84ec51fa0178a4823b3dc0bf74cd4c4d6fff31d7..489dd3724e077222ec2ca2f18773aa503714eedd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_256_double.c
index 2d51d5943fc091569a00889320cee50cfd388c8a..549e644e914d773eeb801c22dc198a58dcf00401 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_256_double.c
index 400c63c4adc7f18a882bc038c8fb5c77d2d93e1b..6fe9edcd46a809239aa1140c3e582836ddf3c919 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_256_double.c
index c172fe9b0ba9718a96e41cc406485eee1dbf43b1..f694a1947efa2241367d622139e4e41eca76dba5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_256_double.c
index 4eca4fe1de15c71f7c0023ab1964edd8c3b3bbca..0301296844401bb30a7b651c747e9a396f4283e2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_256_double.c
index bc014001de460c6aaf6e9a424c485f3d79fdd8bf..109eec62055769ac7e1c720405121a83d619a136 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_256_double.c
index aa69f8b8bfcc6b180014428be161072282deb834..06647ec6a9494f11c2fad6a2cf9a516aeb8a3e58 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_256_double.c
index 1d13db7eb8b037d783be54f8eaf5c239b1ef63b0..947b15d7af43ff4ff733d3099810c8b84ea63979 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_256_double.c
index 3f5365c459b4d828684f22cbc029d002ad46d0a0..362524ce53fefda911b8a906677d0b9b4d02f06b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_256_double.c
index 73bca302e20a0f9835836aae3d036025a06b3202..eaa854a29f05e33541b116813407a4711840a636 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_256_double.c
index 3a271fbf7c8b100e82868e00b4b1c3380aaa9054..6f4674451ff40032442e8b1966a43ec33112829c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_256_double.c
index 4a3649f3b228c4d98e240cb2c3194ff8875f346e..186eb968fef07c682766e36ef952580808fe1055 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_256_double.c
index 0ca7e447d10236eb5d1d014419ce6a644bcfeeda..bd78fbbd02ca889a3631c32d8d986e7c94dcf6b7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_256_double.c
index 39f49cbc86c434715481710e0123af1861d9808c..14cdaad1d6b1f0bdc8a5b22a3a589819e31b96e4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_256_double.c
index aaeb6638a490148584118f5630f6841fe897bc17..0f9b31b5ef4c7d96ed0cbd1af9e30088497915c5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_256_double.c
index 6e3e6d7e4798f9055aaab7737bc31287c773d619..00b36acfbd21cd417d4dcb5cb5588f535c81ede9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_256_double.c
index 1d25d6f4b50b7ff9366f14b78ef4f4eb588aa57e..faf24b2d53bdc440d074be572edbc4761abd116f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_256_double.c
index b982a0549801ae1ba20fd256f535d04a3e2b75dd..92719a67be7d5374e543a602ab40dfd0965d49bd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_256_double.c
index 7eb04311a56aee7c57e91c567862d21e05137905..9872711a80761b2d53daffcd10f637d0aa8371f4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_256_double.c
index 7ffccf46952f4dddd9267d9aefa699c4fc68b1ec..bb54c7335eaf32131b0f939478274a4e279d1a59 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_256_double.c
index bdc230ae10777858de8fde9d088f884a966456db..4158ec4eff73a065e574c2c51d3555183ecfb17e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_256_double.c
index 45ab560a4cf3b6ec67b18efccd5fd9c7433f14ba..7824a072032f96325b62b2c9c23a731ac136e9bf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_256_double.c
index 2697f5cffa849251bcb00129d588b16693bc5efa..252b9654bf5f16eaab06383509f91d563ef69e03 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_256_double.c
index ddd634ca1103d962ad794d289edce238dcd06de0..f3028b2b390de1bbdd26f32a64bcdf85115da302 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_256_double.c
index 9fb428f761ce7c1f098c0810ba0e46e3586b3604..ebe4c695dc6637f2fa08b0bb995e6bf8dbf57e0c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_256_double.c
index 9c4c73f4ee4108af313ab50dfa58f0368902a480..9dd864e9e48a61301faaa8f7cfb807da5a5be3af 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_double.c
index b9030006603d50ad5a4f63e9811b02bb29887b13..1aeaff320e5def3ee9e5513dab5b075508bd4702 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_256_double.c
index 07d3e839997b0721af9f325d424449efa1f2e0a6..6c0f144c72cda49f71ecf76de690d2da83a10408 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_256_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_256_double.c
index 106ef8c8ded20565df818c9642e8deee6a5350df..b4d3a356f5735347c5ea97809431e17a690eda37 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_256_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_256_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_template_avx_256_double.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_template_avx_256_double.pre
index fc0fb545f55fcd7383bf34b3bdef3ffd3325cbbf..5a982a87f5f9a640694bbddbbc1e242f9fefcb8b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_template_avx_256_double.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_double/nb_kernel_template_avx_256_double.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/make_nb_kernel_avx_256_single.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/make_nb_kernel_avx_256_single.py
index 7fbc8e565ac6bf737e77e4bf4752833b0d0fd5e8..5ac78ff6b830b6c0a9d96b338ee0ec88b97d1989 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/make_nb_kernel_avx_256_single.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/make_nb_kernel_avx_256_single.py
@@ -91,7 +91,7 @@ Arch       = 'avx_256_single'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_256_single.c
index a31eda80977ff018d5e79c1818272b580b1deea0..aa03b044ac9e9faa77f54cdcd3867a455c857692 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_256_single.c
index 6e13e32406f32e5605b0b76653d3edfa600b10a8..7b77e33c9295c4a9464f6c4dd68c699570b61c37 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_256_single.c
index 85b0b343239767ef44e3cb7243932f08476a0f46..4f4e21b90d722ba6129484512ec4b2741ead20ee 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_256_single.c
index 571bd3b30564713576c237935537ecb4834d2652..c0cf0a1436627505b9891fc57700881c0d8e18a5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_256_single.c
index 8ffc459f5cdf68a6556eddf2f6655d51603b0868..0baa487baedafb1f618953c9f6b09c4581204ebb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_256_single.c
index bd02d38a6da8667bf96889fd367016c7efa0a0f2..82193454fc0069b0849203ab1bb4f1fbfa70cb4d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_256_single.c
index b3061c5a0716a551275a75d33a72880d091e19be..538a8c41fad856d4c1a96e5e85b17fef564d5bfd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_256_single.c
index f58e48ae27b2362b78d3350c61c21d31e18fee3f..b85223db9acb58a7c33904a5db091165ad9161b5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_256_single.c
index 90f8e86e1197586c9c3e7894f57d9ef1ea154d75..60decfaffafbbaba30eb8982305b59fb1d8e4d65 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_256_single.c
index 0bbd2fed8ecb584b4221fc028ec2c9df0b704a5f..3085a856983cb3a7ef5263a3a2cb32f9a563921b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_256_single.c
index 1acfb9628350293a123005b693cc8e7733649955..c607a8f2b326f59d8fb0553b8584f9ea192f189a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_256_single.c
index d7c1c500338673d7e64cb5731fccf39706f41e95..2d8cbc8668f6ab840a94045a1c5c8583b5554035 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_256_single.c
index a8c810fac520dd2af17719c07146ff36c921818c..77b46afd497150a3846b8e524ae57a146a2fb5f9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_256_single.c
index a9b004b4043bcf6f33baf01ea33fc2d043fccdd0..4b0b3600c2b81d5ddb1d99bdd9141d364647bac7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_256_single.c
index 6abe07efeda4938515259b1fe37fcda29468a003..f8abfee955a73b391bb27659c215fb7acebaf7f0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_256_single.c
index 4139080c8d633d3d29263977db9dfba0ca516c57..a87411e41d93b350690b976ea31eb1740eb5ad21 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_256_single.c
index c89383bb4fec4b088ebbb141786cccc8433299db..f385ab9fae672e0e0f45dfaa8dacc2627bd3d679 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_256_single.c
index 4ab736cbe44269e9b812ec3e73a7022ebe2d4e56..ee326f8264a3b99006abbd84cb243b4c8c442fce 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_256_single.c
index 1e2b2750ea2ddc051e50f45d39eb8a95990dfa4f..831a38a7a21814516bb0f4c9cf8b45b88b94d1c2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_single.c
index 724bfc6a807db4313cf4718c6ff2bec7ed2feb41..f5c4a670ff46b207bc528b9dc93927d03da855a1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_256_single.c
index 8e33b714725ef9703ef83f172a784aa1f7d44933..abdec63673f2873e4aa936e0eb0f2e97d134ff42 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_256_single.c
index e015d71523623d03ba3326e0198b2bdc140b5886..cec550b248af7873591bcff543d894f1b090593a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_single.c
index 58592a4b2e8acf5af3cb3f70ce14df54a4b9d62f..a84f602c0ce662b1fe9827b45499362547b30fa5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_256_single.c
index a5142edd1dafd28d2263fdc2b13224f06139de89..88813d81a11370f5f7d4b078334da13067022c2c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_256_single.c
index 74e8807fe4276ddf15fb17484382db84410ea211..8745f9d51ec28e1a9a313feeaf375aecdf43a345 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_256_single.c
index 72a9e404a1b14ab218f050b9c423c8da565f400c..eab0a9f0f3aa29ac4151881d8f7bab9b0ed780cf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_256_single.c
index 5e142007e88c8d7a44a0a76b7b0e73f85ba69f41..8856a91788db639b6c7fbc5b55ef0c4da5fc5947 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_256_single.c
index 886363fb6b47bb04489b1106a4589f75914006ba..8f26273f4fe6f02e2222a9a67ba8a4491a63c36f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_256_single.c
index 8549fda531175073cb47e09ae4ce63a8a76818ba..00665eb7d9052004510d6e89ff06f265862a2478 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_256_single.c
index 8c37dff5f708559aa033f797836444206dabd9ff..851dc73ee822e0621abc3f6666a3a07570d5613e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_256_single.c
index 5eca689122e617bd1214f09031c486728c9d443a..9e793fd02d23492e34e595d6909c365ca430f7e4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_256_single.c
index cd8a4e475a23ca0b07d9832e107d72ff89fcc3d7..945588e66ee00046eac210127269288c606ae14b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_256_single.c
index 6b8296b9276b695baa214d6b38778270d46882d0..2743f946b86d605759b9a83dfeeb5d5137ccd671 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_256_single.c
index ae0dfd67d984eef9230548933563a06a12c057c4..79e60b612706a2fa98f911c2e471c5ac010bd5d1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_256_single.c
index 5da9a1da970cb43e43fcf762155690c4ccfd312a..16654bb5f0366dac4b27deda9f4242f19c09e107 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_256_single.c
index a47b1e30c250df595bfec94eef16f824c6fb2638..ea120b149c8eb30cb71ef1a997fe3eac6ff71551 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_256_single.c
index f12a5936acd9e6fefb3fa7957d9198b0356e4a9c..c3888dc47773782114a02b63e9b305fa8927139f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_256_single.c
index 1a4dda9aa3df5827044dd9a93c7c07d35479dd80..4d34276cbd4879a90b07a7aef1cd07368b21b8d6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_256_single.c
index 20ccac0f8630edf52c45192dc2474a89d903bf63..fa99e30cb0cab82bcf45856a8b92257220a83f86 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_256_single.c
index 4a40b8e29b5bf9b27eb13ff0eaae9f8d5418d340..c66e394e1b65579b6f37fa1ebccb132d1676966c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_256_single.c
index ca5729cf5a3cc0af982cc7ee60bd5e7a316a402e..664614d0fe924c20906de447ab3f9c7016bccac0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_256_single.c
index 031b114c85a08343b3da30831a0e019ef8cdf1e2..339c8894e3fedf18a785ba543bf8b8b04d273400 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_256_single.c
index 960eab1e4d9f7061641fa5f0bc2db26cccd791dd..f02c51fdce3976be7c3485d2e27c3b8463b6a1c1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_256_single.c
index f4e6b4f9a84e8cb4c85c50df33b83cacd553c677..7b50d8059ec62ce56a04e3814003b9ca0d22ce01 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_256_single.c
index 5fece7098968b9ddaff68de11b46fe679f1b6186..6171ef8688bf5e9565467e54040440565c7f6538 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_256_single.c
index fcb460ba8f7b3eceacaeb1f243f7ade2aed49c57..bb2034348fa278e1a39507ed1fc8e8874dce9c8d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_256_single.c
index 3bffc47b7a698052870c7c529f3708af9af0ba51..386dd9be2de16cf75e60334f9488568133abda11 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_256_single.c
index cad4bc8c9a913411f17b4a2ddd56da0573b1c3b5..f016b7e7ba55c8018d7d81eadcf82901a029e016 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_256_single.c
index 438a83d3047e8d9503ffbe9690b7474d8577d218..d99beab98bb78e0e001608d10e74ce389fafac99 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_256_single.c
index 933a9e0041e8fd16cda9474c95a34239cf9cee5e..b5b6c86077b1b9bfe341050bf7c56857f9039a03 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_256_single.c
index ad3021dc7cf1811038009521f2d14c15b3d48fea..0e51b808b5053af56f4f580331eb66ff6635a343 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_256_single.c
index 934a63e443664d91b305ced1e1799a2f885b9c12..4c572cdca934bfbba8114b5e07d99550021b1a45 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_256_single.c
index bc130f565cbc075b54acbc5aa9614b0aa8d96824..40add9954c5787fac52c59d97b6c6ceb6b3587e9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_256_single.c
index b7328ed5156a6e9c23acfe4a574c216cb9389a75..c4e09aa519b2f677e4467c6ced3552e550ab5cf8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_256_single.c
index c967705b53df6cf6eddd222c8e7f0959d56b92b0..86b8788cca6ad874df6caa6127aa5b9a9da5ac1a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_256_single.c
index 18e0d5c13d415d16b4524b8e550e1bdd7799cd25..b7ea6c7828eb2ec5018d53a2f79e58bc3d8e90f4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_256_single.c
index a1e1a12c9bdc4f761c1b4e8a606c8451a8be5748..5c0531cde149516db052b4c95058a14fe254133d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_256_single.c
index 7765dfcb6724021b0a5ad8facc69f88c7e469006..0fab43d84c32a97bd2c7a021f56b8c982649b1e4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_256_single.c
index 1b71717bef4621f08efe9cc211fda89301377cc7..aa65c9266b9568cb0e1a5476f471e6d3bd48ffba 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_256_single.c
index 3e891d2b40dafd3993e53da457307c5b26cf93f8..31f1999762e63036ddd20cef90f31bf851b30fec 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_256_single.c
index d98f635faa336051d6dcce8057cd20e4deb8ea82..97b2248338965669c445e83dcecbcfc178a84945 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_256_single.c
index c75eec892925f515b2eaacb67759908e24f5953e..81eb27ddc146b3e7c1fab2a0177f45fcf1246827 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_256_single.c
index 89b9ba67a2860c9e688816631046cb2094c35900..413a02a6d2f6183e31830c58bdbeedb0147dc365 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_256_single.c
index 0e362a5e5c4fdc0801df17c14d05bf1bd0a8e74e..355cf93a2c0ff062c53698ac683562da6a9ef78e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_256_single.c
index 6eea3e82a524a735e6ff973735bf726923137373..f07b5fe107b8704ab15bc94ff6d6f7770a3714cd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_256_single.c
index 9e111c58abf69cebf6eae1e1390aefeee055a670..cc68f1a6db0f30b60fe99624991d94b42a0ccccb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_256_single.c
index c72d60fac4b9ac422cce6ee26cb6079bf8071de4..ce9ac5fa60a0262d4b004448bee5488238ffaa0c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_256_single.c
index 25dd57bf7226526d4ea54baf86b3af1527535421..19c0d3cc87a75f8efd53aaa7c8d8eec15d1c3a9b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_256_single.c
index a9ce40a2ce0deca05da2f83b076e3140b2d57297..5ca835870a572e57257625cf40860b9b79351671 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_256_single.c
index 5c96f9e525887888f74ed3f12ec96a537b2d5552..954a79bc0a059ee85b3bc63342bd61d5b3cead2b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_256_single.c
index aeb732b82be9db465521e5b2a0371a4ccb25216d..a4a4c285630eaefdee08a26a1c326497bd9d82ce 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_256_single.c
index 6be2e984edc794eb90f08727e966432c91988e2e..0113d6874ec5be3b2a1067ddcaa699bf9f13c913 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_256_single.c
index 9c9c361d2406317fed2bb862c7f02c444df9bfe5..7031fcc5953a215f86090137e31ff05da122a440 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_256_single.c
index e1a50a93ae35d7908b10cc2435a68476d94deed4..4a1bc28a9004f5f50f98a61460616a998121ef34 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_256_single.c
index 6757200d3663b32944304aaf9b20accb5410691e..4eafe08cbeee9c283db71a551e16185722e547c7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_256_single.c
index 846ec020aba305d087d7017007d077fb0be8779b..69214ec45f8348a45ba25137b9598216b7b0397c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_256_single.c
index 839a2fe7a87f4a84cb95c9a048a326301fa63b06..cf5ca99ee94ec985fffac8b8f96d2afb125960b0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_256_single.c
index 05568fa27151379f20ea4c4729989e913553a0a2..aa733754ace869863343accab7d36c33ef7d0c96 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_256_single.c
index 42fd0f4c5292379b290aa88af559fbc4e1d187a1..c1312ffbfb6c184a48f098971fee4394113b93a5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_256_single.c
index 2f49769097acbabd94d0af4a7c00f5c86256f000..6847a263711dd1360945c0529ef3d597e34efd4d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_256_single.c
index 465393ac2e9383f716bbf7c0394991885d387316..25f753c8465699e11908c3bcdbb6771bafb624f8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_avx_256_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_256_single.c
index 2a799a92ab873b0784d63f137b69e47d51b59906..0da3844871f59cbfac0262e7f11b94846f902d71 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_single.c
index 4dae0d8591655fe71d6fc15cc71369df18b92682..efa27dba62ed72bdd84eb9fda880f1e354089a4c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_256_single.c
index e90999a54e4c84b6a225f9e893806de5d60b3285..0fa8711f7e9224d25bf834602baaa4956d34d15f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_256_single.c
index d6c3d6802be70e7d14ae566a62e6af972951eae6..6ae2e0e5d10a29b6ba5076d466a70f413754125e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_256_single.c
index 783a23e44c213660c45692c86035fef8a359d953..4343398a6d7af9a1ac79e2b582ec02211ded9ece 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_256_single.c
index 4821b27034157fd7807fab9b8065650718776096..9a4bc573368aeba338d5cfe6e2980eff472b0428 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_256_single.c
index a8ac42a539ccfb9a1b115203323edb4279aafba5..a3cf360b8d68aa22a75996999d2b32d15176c83b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_256_single.c
index 438e38fb22529d2cd1bd2128694743a1cf1bc89a..f4cc911fc693dea040dbddf1f3124a0f08749ae4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_256_single.c
index 7055594fe194ecb540427f1f7fa6c3bdc6d2ef59..84af3e27560aa069744ab66c6bdccbd79fd4044a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_256_single.c
index 122eb43bd814475b6a92d0e4aa42e39485f21f70..1a8c589e1722b304509c68ce858796e74c40b807 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_256_single.c
index 0709eca87eb409e5aaddb41bfa8641046dd3d650..c7c169424ab8745ad781e828508d76ead367b136 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_256_single.c
index 8c2073d185a6e87c59eb1ce967bb559905f25c15..d4aecec53759f7d979642c5925033e933a6432a6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_256_single.c
index d274860cb2b420d46bfe4fd2be055eed25d7d96b..ed7aa4e7e60aed0480786d01327c5cf4511c2eb6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_256_single.c
index bba56c91256c178fd6162b995b332a7b9f280982..d28478c01b146bacdfe722e3c502a6d439d8a023 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_256_single.c
index 391c66e0355d5e7170528ac6fd83167e01bfa363..61e2a3ff268c23a168a4530b0d62416548e777e1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_256_single.c
index bec0c9281f48d54bff39c4e20b90cd20e9a714cf..e8a5587efdd5a39865ca9d5a93d7962782764ec8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_256_single.c
index c02b483d73d147786a37a66411147f765bfd8b8a..69ea0a7056deb610505c3917bc8391dc292bbc59 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_256_single.c
index 812961b4579a9b737e75fa18d223a3bd5b87cd35..ea7b20ed0bcae1a15e7766aeee823980cd33616a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_256_single.c
index 66609cad15fca70e398feda2a89aacd4c19a2af4..ce2bfd2b78aa4da7b3ef37bf0fd6859a9a10d8a8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_256_single.c
index 77789306e5f5fafe2fda88c101344045fa001e62..b1a482789afab5af9902cf53bf736052eb5c5cd8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_256_single.c
index 06226933cbe92c13a350c7786c2a71fe31da0d0c..72345e7b811a4eb9e53659c35b5d0f690a7a6620 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_256_single.c
index 6d26141a39de614440f977319e4d98f38f1a89ab..7a917a97f93f88634d3e21f9358b652bccd0beb6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_256_single.c
index 9cc53dc32451cc3733b4253d4a8f0ecfd3355703..154743df73fb0c5d28b87e57ff437e7cbdb83cfb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_256_single.c
index be29237f7ca88c08f89e93cfb5ddb9f371d4c593..b0c9d43aa7ab88ccd36c8e5a6d0c569607a53a97 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_256_single.c
index 60f5e40e51158d9b0c0312c5d8efed6fa1f36fd0..d1211ebc2af3b24bc428b921784a698858851140 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_256_single.c
index 95a2616b3823fdfc26b81018bb3c15003f0cceb4..255eb7810769b5684c7fd4f13e436ebff902a656 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_256_single.c
index ed2118b7a489fef40e83f724df8725a188a6f20c..37be02e53db1cc5c025ebdcf394587c3dc26327b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_256_single.c
index 45fb543596757d8e5b9031d78a227793f33228e8..849ea95c56c1231c779615297df3ec12ab11c389 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_256_single.c
index 26127febae4368c9e0fc082e074b81f77fd1ed8a..f09c6e259dc949c9a484311f66eecdfe98d3d13f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_256_single.c
index 9bef5e60e80d059dc6d9a134744ff26567d50190..f75bd0cc555f3ff30202c5c8b1765ae13ca4d51b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_256_single.c
index 2ac9309257a031bed719aef8716f0d3bd6fb9661..1d0e47bd429754db41339a21bef67b41bbb9d98f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_256_single.c
index 6b7fe1cfef2db4839ffe8c5bb15a2ad1ee180094..d2a9718db56fb229eefc8ef6ae9b7d00436c22fb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_256_single.c
index 714e5ef5c3daeb163a2108be66d556f82aaecf4e..b7a513621840dbdf563826aa3fbfb163af4d9b29 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_256_single.c
index b70518f0043a7ff333ddbff9d5ae19e37e730d55..210a598d493b563dd1f8a7b49de8dafe924201d3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_256_single.c
index 6eeefa77d0dcd0ec0523c045965cc04885029a0e..7c86f1ddb28a66227f19e44aae6ca2f417f9e31f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_single.c
index d3e9fa1d65ddeca441f9d30fe12e897a545c29dc..02d059fb119c4d2f40d6b639e29f66b305c7af23 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_256_single.c
index 58e2262036751d81b010ac61c45d7bc0ec0c4ef5..4be4c70d3445df509cae338665abb79bd09edbbf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_256_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_256_single.c
index 14ea9d2f5cb9fbdd704c04c8bbe613453ae6ce44..0b2c3a74cbec70e57edd947bbb049e0466beaa84 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_256_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_avx_256_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_template_avx_256_single.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_template_avx_256_single.pre
index 77e9227ff7397b243592d12d2e869ed8a95d4db5..7782d4f50d74b54d9ef5e90f88077e093768c47e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_template_avx_256_single.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_avx_256_single/nb_kernel_template_avx_256_single.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_avx_256_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/make_nb_kernel_c.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/make_nb_kernel_c.py
index 295fc899e662b8aa18358a05231b45120df96116..26104e654f5a6d3d883508a97da26b347a0db5b7 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/make_nb_kernel_c.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/make_nb_kernel_c.py
@@ -91,7 +91,7 @@ Arch       = 'c'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c
index 9499f7b90919e97af56b3215a236a0c342e01cc4..d54078bed97182da4ee38e861fe0337993412200 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c
index 16049aaba01fddde0ba2d7c41a7a6181959a3060..c3aa962700ffbbd761b8b376998f0ebe6b0fcb6a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c
index 9643d02e7c7e3113c9f98937d373d502243ff1c5..e8f87bb58b29b0d1b2feaf7b12f4a276c0f47387 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c
index 21e04731399a796ccedaf8e22a94972dcc5a5c94..ff1542da471c715d6bbda532167b41e1d7d12d41 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c
index 611e1ab72a0094605cd23460f3ed79043c5ffc16..7ff2b66710244ec88a3f68b0125f0ac0f67da2cb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c
index ffb2e9d54507ce7684fd3a05ab5a2d7d5b4c7f02..053cb79f7ac6aad966de93aa27d3fd03bcbd4cc0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c
index 3ef92fa8a02e25a5c5605ed4c949c767b9eca05c..f271637d663f2c6e54c2d695a287826dcb52779a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c
index 6120917f4abcf4c0487fd498d2d55c8477a88022..f11c91dde0d47c4ba3b2c4409afb796c2e878d4a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c
index aadc01b3216b958e68d997ffbf3ac397e7a2a4a5..a016255031c464a3371bd96a8e4525b968b3105a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c
index 552622f761b6b79f61f16417ae536795a22bf89e..68627d6cf6b89df3ab3d96027978f670d49c05f3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c
index 0f97c88875e7367016aa84410f243321a6b27ff6..c04b3e17cdecfaf0a1b1e31dcb421de34ff4674e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c
index f941569b7b8ac134b791bda9e9f554172e75aa22..2e364b3edd0b1296fc1180dfaeb4f1b0ae009204 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c
index 647dc047ef7f4bdf39b84271bfa46b3f94e08318..8f4db07280aeecfefc082bec9a71f9cd41d18734 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c
index d6153965b408dfec902e34b818c517d888584033..c2ce2d955a75ec7c95ce7f95e1a8877ccd107870 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c
index 497c65af54f4f210f8249dd1664c939a36e760e1..06dbe64b5b7629bcce0c851bbb58d8116a3cd094 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c
index 5e7fd84548c0df51f046223281eff477e4ceebc8..9df6bdd66a48a7d558e6391b64872118f504d108 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c
index 164375706f9049b421b9d950c4109d17dfd0b10b..f42ce4169ac8cbff345f2161e305ce452e9134c7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c
index 43528767e3cc633bb8647ed74c34110a34acaed3..1154b062288a37e46da31dced4a6acaa641dd7fa 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c
index 535202dda0c1d8e24633220999f3fa97dae9561c..b5de79603fad9f3a513a268e953c1d0c2f7a76cd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c
index 2b5c5273bc927ce577d421ec347e22c8918f1196..d478b538180ba2715cf9a9ff118b4352f36b48ae 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c
index 8c28c2a5b03bdfb891d2d2279edd6ec9c390ee40..190902b76ea9e2de51487aafb62a099694d9a3e0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c
index 81d07fd3e05554171929b2631bc53b025d1a1143..44faf94626430223737e989bd7d3624fd14c502d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c
index 0ac84d551e00a7691393dc98e706e10fb5281e83..9238d542688f37b6239647c4b68f6c5a079e53eb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c
index 4ae2afd82003cebd3804f29a604261fbf45e69e4..be878f27aa3e56ec3af1e2183ec55492ee665c2f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c
index 4f4391506a8d03dc8da3b95fca3b5ce18b403f84..7efefa3e91cfa1382064c592a7decd0901de0ce3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c
index daef047aad97ebba31a8f65ee0335ab30455957e..c357e9712451fef172d5b946b9b518c1bc5662c1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c
index 2d8484b34c4d43149fe1233b3a837e0095ee30df..8951a0afe874ee1909a4fe238afe5e4a6757b2a4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c
index 888d80183f551e1a6b6df1f60855a13ff2ba48ca..e186736d42605f7849c2ac5e238b62f617463df3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c
index d7dd3828e5918592b1c5b62c82ecf358c90319a9..5ea7b7ce8c7fab755206f25c1bed8247806358b5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c
index d295037cb2fcdf2bd42211a780fc0c1ef523b952..13e7819f7a0f66702de86ce3687028d35ecb87c7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c
index 5af7862a7b1903ff094cb7c4558e05c4b02617c9..0ff5652f4a78d4d43d052f45089cc441768e124a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c
index fd8a6e3d7c0dfd216ad5bd71594bd82deddbcb2c..687f1a39f65af7781235df65c48b3056edff2402 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c
index 0ad9809245c11ae9d0d2972818c0683abdb0359a..83be20c8937cda128f4fa0819e8c42947252c008 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c
index 2ce4c233034304b2fac72fb699be26d518e432f0..a04f5c1b6c1f9f08d59e8c648bb64f33f2043dff 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c
index f438ecc51e12cf673d84c9937c65193710647945..70ae0b115b851fd585841923aa913fc35ba1d244 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c
index d415dd2632115d42dbb6c26b12a749c322c3566d..81a046d0e504ee80d4b4912db04827a720e9e279 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c
index 4766c6163f951a5be57c8e3b592a086c8657414f..307b0e4f36dc2b5aa7a904cff04cc7f7052d60c5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c
index a4ab2122175e01989d53767064b0b2b9c2f66815..30f66cc4e37377601e79df8500cabdbc15702ea7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c
index 0596650da0cd79c60f88b240257a9a7602f87fbf..78c95e34c96ad0986982f03c2949715e3858a745 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c
index 9cf41ba99204fae87de4a9b013c6843240c0e192..af53b8e220e2b479923ce26c8f6178aeb187ebbb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c
index 75a403b8001e2e3c731dc7608b6ce3813dc30948..e1b8c6928acf2ed0df0e426a7cf0894ecf6c2850 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c
index 12e60505030d13b0ba674a9728d03fe4617a4f6d..2c143091a217ff33ca5f2a35ac669a3b47d15be7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c
index 94879f3e6780da7128026b4d4e436c54b70ae241..0e57218f22099c73a6bf6e2a4ff089a4f0e5f2e3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c
index 303a70d716dd9c1b7c097fa71b4853b3cfe32c1d..4d1b3f37bbb4adbf7a8744c61cd927ba9e659d64 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c
index 90605ff92c9cf4e69d22cfe7a88b131958b5c6ca..539e357474c327788b056aaf6c0474ed694bb55d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c
index 9c5f5fe56ea0cbe2e06129a391b84943e9d3e163..f086ba135900ca11982ff7e881231e8778ac3423 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c
index 51665bfd15f45a5a43718636f173d34121b3c6d5..b3e6517ad1be58d584a327d421695caf7730fdac 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c
index 2836f459cbfb01d232890e3e0f4a295683bd06f0..1185ce80153358077104f473292cba6a3888f6ac 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c
index 82c747db15efafb0b4830f0573b46faefe965219..353307411beb076754a5bec7cfde12a6f0c3c70d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c
index 708501b214675dae8380dbc16777a1ac4080c269..01b847c91cd97e3dd8dd067604268b6d54d9dda9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c
index ce69cd0190df0a7d2bf06966f09f8ac5dfd52910..94cbfe4f43cf2f3fd0904db95c5d0701733f3f05 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c
index 2e8b3aaf731edcdc6a6f524e506631f772c472a0..d5ce25f4bbf174f2b2cb8a849672b4a08b4b5296 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c
index 57547d680d1fa8a75e986512273e676ff91d7887..31fc99e18c8b51c69052beb724abc48b7f426533 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c
index fa0bdf052e5d23ebecdaefc21ee135146c3e0000..4a00606f7f0ce0bbdbe42bb98fa38f82315f53a4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c
index c2f405e926aa33d3325f14c16a9ab5cbc4e2f77d..002aa84975e49fdd481f11b527833e2f42d08b7d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c
index 04ae1748f7b836745a22a1f4bb424554a5eb5afd..498e2245c3cadfa748930b1b6535a4ed4ef355b7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c
index 9ca1308997277134840992e3a0bee1c64c5dbe44..ad157780a8271b4087322897b9aacd741ac30ebf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c
index 9afd15c2d7484bc0b14ca4b2718bb97139203149..bebcdb8b963da3b08554f68d908b028f44d9ac43 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c
index c04134dbc0e4cb38d179a616b2984f2d0d1fbbc9..28be6191aeda00aa1e94c3e68bc276d555db7807 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c
index 3739571181eeffd0ef05062cfeaeda6915e6de89..3f033bd3f5a9e6a05543dba4091f7eb83a689eb3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c
index 319baf3732cef326cfad800185e615874bb5c118..06e19b4be4fab4de0c70bef52c37842996fca1c5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c
index ff57f3de70ac6f28a43812d8a6e95a82edfd63a3..0640260378abb5bb99eb6cce197869fe1ce74600 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c
index c95279616ae0964b8e873701bbb9f155f372e161..f6c0b2af30ef01610259cf7d298c3aa75fd527b6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c
index 3bfe9f1dbf23ec01190d5fee01fd9e625efa0b42..89b08dce28df06444fa932aecfcba973ef7d082a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c
index 714dfefb4884bf0e19984e2e730a65247f2b58f3..c2382764e467139cb3a5c751874f32ce1b2fa1e1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c
index 85258cd5ed4a30f4f910e836def7928cf4c0c75f..63be71c745eadfa4a77c58a5b80cbdda0e7a2cd0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c
index 6ed0b5f876248ab0d27b3b2f4de01a06acbf024f..be2658cd8a984a4e5ef565095c18ed90cc7a23fe 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c
index ede5d428d88722c9b64305f5db704836fde22673..f14f90a69b9a2c0857607c2b3fbad61e876dfd53 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c
index 17f33838b815a414205d0ddf022d61584ad3ec56..6fb60309c56f88b28ab807fa56037a278daf317f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c
index 9a5cd89df2518452ace6fc102448ec9e0f649fdb..2b89e65b7a4ac1d2e18f1048dbdf312fe54560f2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c
index 48ad7002d85a67751ee437b4844fc4c1d34af463..f4b26ea81943cd7315bd40ca75d3824eb0b5fbe8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c
index 3510cfa436397fbc144a93472fc5641e672b4cb4..282b386d19f68faa9908398335d1260d478a463e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c
index f0c751f9918c1769501fbd2901f6094c184a116a..f1889da26a7c999bcea2b3ba8b8dde1d7cae3dc2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c
index 0dd4cabb16bb88981a0200f51b4265f6403b9c09..6a022d2f028b918443ad8cd0df80f54f57eda12b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c
index 6aa6ec24519d63beb6512c49b9280d37b7e5e930..13e149307c1755a8ed3dda228e609735fa3ab217 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c
index 47fb0a5d5cff6befcb6ad15d4be404028deec54b..8f65363f672ef18468f939a3b2b874a6369871cc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c
index 8f11e01c2cb84239bf496b53c88b2aa53a2d9d1c..c9acdc25dfa9ab0ae94d7f1f1193052486d69106 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c
index 2b3eb9ca9b5fbc13bffacb67a18bcc04135e1cca..09b613d38838b051bfdec971f859e6d9d6110410 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c
index b7cf47a3d0213e21af9fc209887dcaf401646b24..c069175adfe233329b5230a7b2ab7d421d77de2f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c
index efbd2698757da20cea3de879194a9d521c3dc2ff..fa38953a6f4e52c5b144fed5cfc51f37a0e98706 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c
index 5ade3204480c8d0d630cb8dc4513e535a5b89640..976d01c917a796f03b65b30f0c2223d479e70bc6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c
index be89b58d937adc2a9fc61ab5bd814a67a68342ba..a14d134142d254628972671944f840e1a4e38bd3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c
index a77cda6613ba8d7a4bea29f8b2ac6dda4a92b485..2ac0fdf837d532c65c9b0756fffa39e101f3f356 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c
index 186716613f5cebc6dd6ee87a08bdc9bc8b8333fd..65a1f32a72f9e96c5c4c0d37816ab4ca6a9276cd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c
index 718599c1ef9a827458971bc36896be763bda0c7e..18354e3f9baa714a1f87330bbaefc971c791c0fd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c
index 4c5bad57b3715befae2e026a60047ab188de61b6..bfb77e5fbfbba01a0fc107a5fabc9e1b2978eb1b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c
index 130bd6600f842e7850c04cb0e193a93e11c603d0..906d91b40c042f0a294ed88186e06003d2674ff4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c
index 30301f6152befadf2bad550776b538d81334632f..af7bcad8fed1617355403c9ae8571db069ee2602 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c
index 7baa0a449a064f77f7301bab36bea93a2e556335..25521530912fe5d9d5563e15aaac8f6d30e79dad 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c
index 064da2180a09ddecfb5f04124d859197acdd6d98..a9232988345afbd5614aabfac9169ef472216cd7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c
index 8270304174043e0b38acb5139ffabbaa58cbc080..49ba16448d99804b5d518c100ef9e0d8743b26c5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c
index 3f703901c0b29f6fabe3527ec23af47060c649dc..4a455785a6ef4efdebf53e3d60b6ad8ccc36aa8b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c
index 840728df347979e7e130fd34eb555e482c09a838..20f00fd5b6e85661a6207b5ac9265ea7033a31c0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c
index 3a35f917b05dc93d707c408f5b0870cad32fd01a..818d3638e7f98dad84457444e7e8286b52e1e9d7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c
index f5433aea9e1d94c9516888449cd31c2310bab7f0..213b0cc10488b0d97551bcbb9f4ef9dd777308bd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c
index b425227f06b8ea07e1597f5c98a4ddd7fd03ad41..0af683f352f07a89d962dd010e1123650281713c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c
index 89af6a13d49e2d7934d9a943d0dfddda0ebecc7a..4c54a1abf2ac04debf3f9e4cbd5f20def6058afc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c
index d27d346f645f468d65c9d44972f310bf24f295b7..969655def35084f624fe8adc1f20c4620b12ec1d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c
index 816859955cd78ebd1959031c3e4dcc1ab83d9866..7e0fe6a3e40b9d4725f7037ea22b8ab48451a3fd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c
index 24e2961dbf461660e2d34dd18a57e184b4059e51..795d4625a1c4c1ccdae80a8e9eeaf4817fc24005 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c
index 6bab95c560f15ebcff070ce2b620dc4a800e0265..6199d67380aa46d9097d7987741ff33daaf01e68 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c
index 5c7bb04d1c334ed614ac0aa2059edfb31e6ce46f..cc07a1aa262d5120e05303b7e5ed2acaa05b7678 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c
index 97d2a1be8499f9871b6b936a9eecca005e318f7d..3b326338269875b9b9282927a9f8aa654b2f6d92 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c
index 551d564e0da0aacd522a4fb16366a590b7f5a1d6..d7cc1f7160dd2e45b98bff8fee7906180cbc681d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c
index b5e99f9b41cd9f2a25dea3ae6e5cfc85139c8e3b..01dfd445bcc0b028f36d00c6a9013be3216709d6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c
index 80967c46ab266814ee9f8dfba7c76dcabfe37049..7a88d5250a87398032c05159e0b0988983babfa0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c
index 009ebe8ca77c6d336809a168bae4cc03536164b2..ac9b620aae897feee7be922c2b31f1c9979a7287 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c
index 1d03727aafc78aac83c051f6c701cb618a091d68..a7cdd7aaf5a93250f0eb4f3ab4071e4a7394d813 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c
index 74542ccc70219ac7c8867fa3051b80d5e4ce4633..cdf7052e3f1178e253fda6e2a8546819e8c1dab4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c
index 7f7a2b02a7dd40ac7af65a0833c9d77505275bd8..3662ac47808f19e79abf5726c917bca3e0f7b1d6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c
index 7056b556f0989ab8f3a9dfd7a50a1773ce8800a5..a03597c265a9ba63a76172735f0764f4b7395e03 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c
index 07dfcce3f02e17e17b8f21788f7e54ab03085bae..2805fdeabd2b9c949f3083c332a2fcddbf4ef637 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c
index 14c5d6d9f023a2f38c4d249483fb2faf88cf8f9c..1f66642db83088775bbe04557ddc06c0ea0bf8f9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c
index 842e8baacddb8bf2868986d6c2808bc4041c5dc5..b1b1fe2422f6c501bfd4f61f4787186a67da8313 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c
index c693d9309dfa3322cae151721d1f8d255f4d4d83..c51b5bd13571c82b1c5cb1736bfcf09a10bfcef3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c
index 843a8d3ca5f6d326edce45f1bed8b983afc68a3d..fffe709a831d0504778e96c7eb382c54014783d7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c
index 271047aa9c334cb48023744dae6dbefe15dbb3f9..61ba6dc6dd99522fba07ce16fe40fe32d816eb15 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c
index 8831cd85dc717a5a5ac0fb6f4061281f9f36f897..0d1c83be285622869f36863f5816704f9a121abe 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c
index 82bd29097b8ddffccb5703ab0e5a896c9e28836a..5481b7ae1df0720eece73b67b4b9ef75156b1569 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c
index 5d6f8d6513e289ee479769059ae0d34994e2da0a..2c224417ade593d4da1626576383b12be1a5e4b6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c
index 2dea8e3799b84c3ca5de90fd2f9e29796dcddda2..31dddf953a5b6171b988e3dd0be364867d8a9b33 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c
index 02f9bd777015e5d58b30888998cc803398168c76..38ae943ae078ee2bddac4084b029a3e94beeafec 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c
index dbee526fc5e6a9ac57e211560f3e2a16fd748464..b1a32a48070b4bc592812a77d61f1a1c86faf59e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c
index 8f95fc6a8dddae6fed9e9d99dd744a9a1181139e..f05a376591d799732363ee28680f38298a108eb8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c
index e43ced64e0b0631005d81a770d3d5c8bfe7e76ce..86b924153a125fe2f3e2c1d273671cedfa4f9f08 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c
index 02c0f21827b3a51e67faf7b3452112627d3a3d2f..6c1537e583ec4188dd25983d0c167f4c0ad6b005 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c
index e9a78c293c69a9c6ece87fcf697b9fd84a3f7bb1..5ba4570d4f18ea04eadb518b046c29900f6524aa 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c
index 9accce27c1bed191d25f568f68c7b4875af3c215..20edd569b4526e1b26da1a4b62f316e04ec9ad90 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c
index a3d90f693cea5e5c473a0a93d3e275f71313db72..dea6a37e2a11a457531789cb0d693b1fae8b6d40 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c
index 7234e1d9904b8c5d73d2c7e2acbc0ed58aaf4cee..145eb9ead4fdcd0bcd3dd1e3805d903984868544 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c
index 078e9ef31f7e0755ea36b90ae25d96f049467486..61935c34d8cff0648093a8fcd7e7f161ef8f26c9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c
index 6920e83ce3a4b039fe7c8504f3521090820109f0..e0740e4dde8aa670c761972d6dac239e08c60d95 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c
index 0c9582a0cf1015af808bf44bbebf51cdda7817f8..2b39320f0cf8874bd4c69452f6911edb36b52302 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c
index d45c33277c2cbfc20758107dfbb3730ca921f9a4..0301e66e8ac726d525efed8852424dcb2674bc10 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c
index e05f35aa847b43e4aa18e543b2c86d1f14f51cbe..56b4b22c9812232dd80a3302afd4245ce730cc5b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c
index 8e4a05c6ffb9b8fb6cb45e3f952ec4e293e8138f..bc5f12b8950ef8c28508e0e81f64a6a83b51b5be 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c
index 17fb675e6144f3a404f65464bd4ed3e5e485d65e..63cd5a37209fea9c0800175214b624e064ac893d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c
index 4976f6046c0f98ce9980573e1e33afa9abdac006..7c567f2ef045443b4e78588da0e2877a957fbc18 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c
index 7af523a16ed520343d5319ab1f2c0c6e0fa6845d..4577daf9f308e3779253ed5299c9d51ce008cdb9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c
index 7abbf0f2dd4d97fc904cdc3b8633ee5020ad455e..a5cd6e17b649848c3c04641aaeba78300952ea87 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c
index 1e736fd0b6e619c2ae9fc845538d460917b0c38a..3d771aad38413f3e95d31c92695762fff1b01bb7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c
index 7e1128099f0d1baa3d6778e2dcf6b0b7231037df..4d9968da95794d8204bca4386a01ebb53ab9b908 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c
index 341009cb533f3a1c73d0df5848d974020b0a1ac6..ed2740190a60c0e777f366b9f2c8c2687013879f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c
index 61761deaedb6b348859b1faf80240acd31ea0f51..fb618c2485f6ce2927c632a685a01ec01b03e3c9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c
index 5c01354759d37d33cd199b5f00a2da9d67f513d4..4314861d1e35eb3c4be06351959a84ca4d6c997f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c
index c4918b296d411aa0ee677fd6b79df4e0b8963005..9de0e5f58a57167e839bdb0c201689937527daf8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c
index 7c4e089d0041023b7c89ad924c81dfacc2fee457..ef6aaf9adfaacff3165209f870c51e82aa2f9e45 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c
index f2b41551a5da2bdefb670a4ace06d98479bef5d8..13659b743cb09e31649b5dc6c2bd54c88269ac89 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c
index cab95e5474a0a784af284c6e89b6205c2228328c..e17685f26200c50e25cbf8b52ebb042ca702392a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c
index 9a7d67bfa033297eebcb57c142d0d6ccccc77e81..730df047868e0cd4ffc8ef38f6a1063583e59150 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c
index c720402b2acc8e2fb8ae8f9de1f20ac26ffe89f2..83497574f232b215f5b7af14e09c2e046e699dcd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c
index 173954ebe4d2be4e52da1141daa34a18d09b4043..6de06b067d840638f21dc21a6e29c407b93a57d6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c
index 760a1aac0c197804acc4ae103c7e0ea95a9dac1d..222dd99baef88b9aeb1dcdd8f8c1062bc2054d76 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c
index a41d67c4c71627208d6600914452431545a07883..271a96a83135cf3c8ffde96c78705362acf7b54c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c
index 3b10002918300878fc642a40d9c3f3e54140819b..ff289da5a711f2969ff0e965e228295aa357d646 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c
index 1f3f1092c44d22521769c7459522a658259497aa..46440afcfb1449f6010057adc09bafad45af4cab 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c
index fa7354954fb506c515971d08244f0880ba63b7af..87b7ef714a75b1a3f8a9f25ae2f430101bd7a315 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c
index 4cb59bd36cd9db54313a307b96a7d160d23ee851..dcc99add86054354cccdca1bcbb0c18f057caef0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c
index b4c38aea7265b875bf942a7157d37f5a9369d493..0c5eb59089687a4550b8f4338419b86d5313175d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c
index bf2900ab51d4844ac128d6e18b4bf0ab7327c5ab..78f3758f81af668bb68898fcea1b6c16940c513a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c
index a28215607a77b0f95658f9c188aab180dabb7b5a..040102841b6b79351bc6499aea116108a57e9eba 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c
index 366d43943d0ae9c32dc14b26ef8768a67e6f128a..2af5e19eb59b22b14ec853478175bd7c1924538b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c
index d034ea769b712e0d1dc26f4670c8a783346822da..021434404031701714b3c639254fc1fc2ef7774c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 /*

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c
index 6eae3017090abfbc46c8f0f1dc966027f8d88c3d..cd79b803cf2049e5f2f1bd8b66401dff33ed22b4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c
@@ -42,7 +42,7 @@
 
 #include "types/simple.h"
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 
 #include "nb_kernel_allvsall.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c
index 532702ebb8768e22739dd1b3cb478506955370b5..ff8670bfae274227ee8b54f446d42df34be4b991 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c
@@ -42,7 +42,7 @@
 
 #include "types/simple.h"
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 
 #include "nb_kernel_allvsallgb.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_template_c.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_template_c.pre
index b59399eb041f96078d48bfca992074409fad86cc..92c21075691819248aac4c8abddf3e5219834d81 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_template_c.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_template_c.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 /* #endif */
 

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/make_nb_kernel_sparc64_hpc_ace_double.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/make_nb_kernel_sparc64_hpc_ace_double.py
index b344ebfb61448df1e3d298250d3b6875785dd185..6a567035f60209231581c935aec2ea54fffa6c49 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/make_nb_kernel_sparc64_hpc_ace_double.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/make_nb_kernel_sparc64_hpc_ace_double.py
@@ -91,7 +91,7 @@ Arch       = 'sparc64_hpc_ace_double'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
index 00d34f09ac061c5dd21eb9c668d147eb09dbb54d..7be5122d1b0d1ca6f479014015c61573298eba51 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
index 4dc7ca56e23ddc107283148c8946e503089b0a20..8056de919ca293aafc0fcf902159317a0b421bf6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
index 1cba13a1e5a1bedc6701e8243a25bdacd342ec9e..ef12cae9825d4bf116c5aa639557f651e1e92142 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
index 2451c4dc86137f4e471c82edb529b0890413bef1..eb5bef86ac338d237db987b8490fe1219895a2cb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
index 7c1c5dc2f0f6f4213e830007a5196e33a5ad0fb0..a0f8e937864e573f1022d5714dfaadedf9b69030 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
index be6897972dfaab871b7385714b728fc6b7d38ef3..cd3871c04b10846ba2fed458b7bd66e3cde7a553 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
index a466d6d53195ac4c558632455cb32e0925e3f515..978281eaa1d6d4d01d3067b11c13061bd7ba41ae 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
index e0ff96b8b30985b468bea4555f23bb2d5ee4c003..54f8449ef74734580ebe7511e247d82b3793f8f0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
index 6950765c6fb2b4e2d3bce828cd34fa344c0bcec6..6e357bb60215a9b93c87fe25cabba5713a906a38 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
index ff37667f723a980427b112eec67dc5c886d90717..b57b3f167889c6fe4200b173b265189862648d7b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
index 9d0cc5790f31aedb6786d20581ef111eb08be6cf..5f9a4807f6e81f944da465419718a03cda8e8707 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
index 6f6b0a7835215ae4713ec096dbab071524b37bf1..715d1d14816fc3bdbea007baa3af7c178e87c6a7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
index 21a78ba8efec605f6703a6220070d65263558f25..b824a38d50d0f1ef082e2e409aef90bec12c4241 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
index 53e413fafc6343e23841825b5e05a638f94e0979..7cdc5d54d1c0c510368a819e7c380883f6c73b80 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
index 9926ffc74dfdede8e3c9c538e2a7a84d89332ef1..5aa7929305d8d03139913aaa8378fe282732da4f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
index 2c8eaaea2cc0d9fcd5a6abb000de811acdb923cc..4e72cd0977cccfa64eaef6fd87b667e456dc81c2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
index 4cba5e8deaf8458b697fed1ea9f514f708695b00..856d19e00bea47dbc62820895696abd4fd109ea9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
index fd7dbd32845a0386af227f6663e15ae047987c39..14653d5a284aeb810d69f971da98bb56189cbe19 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
index 141ad6009b87e7705d818367dde836465db329e9..3ea92ebfc5a681561b55880c03aa245bd5df7dfd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
index cebf8de84dd018228c137f531f939aece10e502f..c6412a393389dd672b95896451123341446c5279 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
index 80d5181732333d8f296e93f174298f4b9d09acbc..3c04c3371d1a391b975164356a1a1bd8f038a373 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
index 732a828638a139517c011cce2c82fb01d5fd1231..0533ab5d07d4357a743a6cbd71a617d808f97ebf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
index 246e0864da661092b86c5461798bb4bc120e3628..e230c7ba3343f74e4ed61b8277b57b5553adbf96 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
index a828feea5cb7344de0475c9a70f90e2cf73d0580..cbcdfbeb0cf89e68b25b491d33af617347f6eaab 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
index c667a2600a814a6ad9c6644d72dff192c5937cd6..61cc93b78aae891c13cdb0f607e86ff3ac283683 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
index 1ae1e08710b62c4151fb60655222a7e0fc3473f3..7d53866bc88552af82df7c4f4ea48ea1eef5f6c6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
index df9aa7b98a9661cef6487b0b45a353b6ebd71c87..3aef3cfb0e2e37d48fd7a8f1221e6c294d6fb681 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
index d2864f91930f6219fff8fe4a1831dafd1f4beef9..a9b2b6560e20afc2197d81578c19022332a943dd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
index ba37dd24b577449dc1fd6c59d90c21abe2af8fde..59780a1cd8259dd300a6c0aade7adaf7fe0cc5a4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
index a28cb09f372963e15cc0e7d4a2ea6621e8232f48..0eee73299983ab2eb95982cc438b41fac6b08b1f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sparc64_hpc_ace_double.c
index 23671683df9cca2865e285ca21bd846c5c6a7545..3d311c7fb6124bfc31b1bb75224ff40c8204cadb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sparc64_hpc_ace_double.c
index 9420865dcd80b0112a5fbf5cc0eb988c56a92f5f..a4237e2329eed61c6277afc7f804b2b162100217 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sparc64_hpc_ace_double.c
index 84da2d8ee82b58aecf3a95121cd121b0e228d095..9fbe40d1228c1769be8b5f287fb6574df17a3c23 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sparc64_hpc_ace_double.c
index 33a8e260bf06b23b3b176e707ed72347ca9f39a5..390224ce1083992d9d86b9ac4412deeb8b4948f6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sparc64_hpc_ace_double.c
index 9ae76e19907cc2a062c569f2663255cf5e6447bb..fbd75031bd0581e5c29c57ec699cb9dcd24b9465 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
index d6e6167ef7d333b33bc26e0b265394c1fffa809d..ea2afaae82351e19d85f006bb84354d3bbdb6420 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sparc64_hpc_ace_double.c
index 3b8b129aec1b38dd68b14affcaee10cfe1f78040..3154e8f8388f074dcdfa2af8f44202d4ad95b9d9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sparc64_hpc_ace_double.c
index 4a60e2eafc2a6d6d3de7f7cccba08fa8e1d9e6b8..dac022e976b0148c50e2388f0c69ca04c6e3c5b3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sparc64_hpc_ace_double.c
index dea82ce1fa79d04f8182f80c980fc0fa812cf31d..283de297145f5de89df8e350b4901d35572eba1c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sparc64_hpc_ace_double.c
index 7827030cdbb14eec9772d1c2c6de409812b327e7..8e082662e319f06546819c528179ccb99d19eed4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
index a84e3c088ad75f02be7ceb8aec8bb460b835727f..e97756f4a9908375238885ca0babfa72612604bc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
index 3eb213f323c74fb2633aa17fcd5374eff82450e7..82750c0aef1810cd8da4fdb430f12b6f72503015 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
index 8bc1f8dc2c38024c30583720ab0d2b3b4827df38..ace276f9a0cadbbb2989cf2dd75cdd017ef786b6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
index 5641b773f88905a58d2869df33fbfd664cf851b7..cafa3e638b502b788ac62ad3fabda6a101c5527c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
index 622f84d722bbdb5c0fddf725a750a097292fe552..aeec05c5625d5450e1839262b5e18051a7ea69b3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
index 7928b9bca5a0cdb759e2970cb15ccfad38640c47..cbcc0460900f922d77a26ba42101850ce2788432 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sparc64_hpc_ace_double.c
index f1b877eec671265baf8c98a5cfde5234a0571eb5..90059b6928f0338ba5c15a4759a6e5911646a34b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sparc64_hpc_ace_double.c
index b2b55720b8c1695abf50d3700ade3c500edc18d3..0056c6b2c862d8988680caf067dc815671e058ea 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sparc64_hpc_ace_double.c
index af1528abbed51b2e2f77a282a107160fa3aedc97..bd9cdf8b3dd1dadc0a8db980cd1db9a0759f73e6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sparc64_hpc_ace_double.c
index b8cf45abc6696f7b089f3407ece3b1a2fee42bc2..2db07c499fd982cab073a84d1410c56a9300798d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
index c7671e8e7483920f50ae60a5cd2be625f7664b2e..7633b8593e8e955dc79226bffaeacdfe78bd630a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
index 8fb0eacbcbe1557222e84c3356bd0b75dc0aa75d..7d7ccbb0e21ff23ad280adc15e7d8f9d42746417 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
index 8976491f42ff0010b65d24059554fb2abd2a3cfa..e68db90d547423dad4841ad8de6f39a5efcf9c06 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
index afff5b4837989624fb4837bac22db08151f66e65..f3063ee66ca3094cebb5d4b6de5027b6d9fb9bdb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
index 487310bf3c1c5366caad8038ae7250b533b2388d..158be95043fedbfd3a28aad9cc0cc0b289240b76 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
index 399679d959d0149e6f76d402c03e5728fe214663..6b1cf60a4c1f4efaaa18cab9da473834e45baa75 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
index 13dffe64e73e5f2b975be01bcd64dd76b2166637..409043958509f34d77a2d1726d68cd9863a367d2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
index 1e5665359c9a48dee0bc2ac10d1fd1ab5afe7b90..cf6765cf570623a4a9e134075b193243f156ba96 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
index cc0de15329667d038d60f951ba5a77d3a9f1c07c..0c1bb18d4ab357c511bb0cf716750673638f25bd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
index 65afc9e980e907986081f75d321dcec44c9fcbc2..6a733e81dc48e80d22de9c76135f8896be674604 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sparc64_hpc_ace_double.c
index 38a7346e1c1423c3431d634bb02ee7208a2a6aad..291a15cceeffcaf9f2087d6fc485186fa692cc8a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sparc64_hpc_ace_double.c
index c1e9a2b01a65cec97e20f7c6079b05f1a50858d4..711e76b15015aff92892db41d859f0c5707f47e1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sparc64_hpc_ace_double.c
index 49bf255fd629dd0bccdb05fafd517b797db0b7eb..47eece3f843df3fec6e84df1e4d8ec27b5bb5068 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sparc64_hpc_ace_double.c
index 193ab174c89c6ba802f5d5582af7d9c490fdf0b8..6d38601ed5797d28e2788c3323ae5b3a7fbe0e99 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sparc64_hpc_ace_double.c
index df41d3cedcbb1deed0917f457d1f6f1be01f37aa..86551b00a2cc6975fd8aa137d3fe130308d9085f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
index 6400d3bf4498b79c1442b569a04b502b78ba8b36..4ee4bbd3100825aa3ba7f57feee4b6960071fc13 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
index e94b67dfde0f55a30cac8b25295b8975a28e8eb0..c30ea1b3e82af2e124b4fe6a1be24330a9d7d9bf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
index cbec966ae2aad0490965bb2bddde2675efa484fd..be0f25f412c6d721856d309a6b8072ad95c6d970 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
index bbf9e79f20dabbfd8a5bba95e2f7a70ec3c5885b..c22fe7f8a9d0c230efaea47d921d753fe931ec78 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
index e5e93e45135a896bc816b989ecd63d2b4da00e42..99fba57f5cc41cd2b529063616c8df076699e083 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
index 9fc6b9ef25997b0460bdf8125769ae66bdb3cfa9..a5d9b5b1fb7bf4cb5353fde0a2b4f47245ac5d0e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
index 170c4912a3e4da47c5d4005e1045db6216461cc6..28e7aa91b705ba52cdfd40b48c92a919926500c9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
index 04202a25e6c725b0ea456639aa52ed62264eb800..b42b8bc4ab18940eb39191323385cc9bcbed0bc2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
index 88f340c7db338997399c3e3b2c1292b6e98d7833..4690f19c1a1932c1497d26ead47a8023629c15df 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
index fe1a845ee2f56443ed0f7f401ace924bfa64f988..fbe365e95594b6f9e4600171549abdfd4946e487 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
index b1ae0df802cf5f7b80c68eed2e2b04e2929d6ed7..b965c5f3a1019f5e683c277f26d9317b090c6d9d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
index 7ea6451beb70f25097f47cde46d34affcd17c898..c6ba48587bf5b2da9d9da14039ae3126b36cd838 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
index fde7441ba7a4fb10259805ba77131fdb99b6b79f..0027d9c7def1c8b103d57300daf9a94c671417b5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
index 589e2115b08d4ff36e32000fd492b78cdc2cab31..d3bd69ba2b0f1440e8e857dbb1872400fdb434d0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sparc64_hpc_ace_double.c
index 8e1982d5858f99bb1e0302f9826648ca22958453..e1bbff6d448cbc94dd4562a6835943ffed7a73e9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sparc64_hpc_ace_double.c
index f797be75e053ed5f67aa9576a3a2f3746895bc75..ebcf8b9c484a1cdf2eb8bc62ca7f4bb282aa59a2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sparc64_hpc_ace_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
index 33ad9076d0df3f55ac8964d42a3a181448c1715a..f3893924ebb6c745cf9a714263a2a8303398ec04 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
index 3ac3aa6f41e168efbdf861aa82c6b45c0737a7a6..9c44c7bca6ccb83b27e596e9fe974d18e42a74b0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
index 6a00329f2caef2fc0147cd1af196c55f0aba38c8..af15c56b75ede486b77744eb7d4db2fc47584c27 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
index b8636617a4417b3f88a9d6a94491d969595071a4..3675cf0229cb3b968cd347c30e5ec92a52c83227 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
index 122da5ad22c52a60c9d09a529408486f820352dd..739a66e2dc05396c7b265743781df5a744d5b9b2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
index 8e5b97a429fce1650e090dc4fe36b1be4adf1d68..b4fc833f043d49cba70f36d693849d5734ebf883 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
index dc07f18abd6edc8b3b576864d27d7256b45eb0a3..32e8e82e298a99a7bd9fab0ca57e5c6ba517de3f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
index 40fa48c05f1ae656fc8ceae1e98421c7a0598594..d2ccd2a1c6104e9f40e671ceba236e261bfc72ea 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
index 73ecd6b29f4f7062b60e5def3aaa2c9a86e3f1f7..b82d1dd348d76451dc1039536da8a5c110257d2b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sparc64_hpc_ace_double.c
index 32cb4034e219fed070fc92bf00527f648cbb469f..6c990d97c2be45bffbdcdd1ac028e88475087baf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sparc64_hpc_ace_double.c
index 371a210e44d45a7b4321ec8e81f6d7f34b58cbaf..81e66fad70877b79f6b6759c9d19a2bbd0ca635f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sparc64_hpc_ace_double.c
index 01af2e4f5909f4c5f2a167aef560907c2a86f595..97683566ff820347da9c4e84712e0a9fe2739b62 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sparc64_hpc_ace_double.c
index 1dc29413c1be342c5bed7c034ffae204f11f9ab5..edbc02a85508898d652bf4b4f697431bbe7a9d7c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
index c04e26bdf08b386e01bbb13d01a9b44755ab1d4a..8adddbfd6cb8265005391fbc206f1503a57c03a3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sparc64_hpc_ace_double.c
index a36d621e42b23112fcd454bd48b31bac65ac807f..abb0b45c73dae9c219a7a8d9dd142205690a1d63 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sparc64_hpc_ace_double.c
index a55055b2e0b6ca2a113515454a4068da544379e2..4692f3694491fad1e0bb7414684f718bb8f8fef8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sparc64_hpc_ace_double.c
index a7f11642ca4521c5d3e986088dd4cdd04ec6c7dc..9de4e02ed97ffda271697f9f2d3d57f5f177eb26 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sparc64_hpc_ace_double.c
index da712725eba131d7843c1ddd064ebddb313e5fd5..7175d9864215b0da73c1137da37a49df1efa19f9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
index dd62ae711d191b79a898235532253b45065ad27d..89247cbbfe2ffe08bbb7cc7ebf200bba9f79d1fe 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
index ebaef401ecbbebf6bd66386a293530719f0574d0..7fe882592557eae03e294b6abf19df640327412b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
index 910fa470ccfc791340959ade0546c06a4e83386b..a0c8d8da57b392bb888fa04f55434f628f5c765c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
index ba622b53f40233442c05dbece875b83d3a60c42b..75efa3d223c7f41b73edbe78852ef44440c0d18f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
index 19eaf690418ca7e71cc7e92ef49e4f33a7da7a15..18f16ba43826d54c766a09254972b40bee30c9d1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
index da9aa52937a481d62660cfd17bb222e9c60f093b..2ee764087fda7f5a067015af5af51b1c7f83f3e5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
index 8dddb72bef9cfc7ca85a2dd79818b5f4831a2f41..f777e3dd3415460a7e58db59f50d7d0dcc1e8b27 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
index f7386e856888630fa0d28ef007c5e52251a5eaeb..8689cc8701fd285108b4eaca247a7fac0b25c7ed 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
index 2a06234511be4000f78118dcdd9a5a6583f84228..e459dd5a0be5c431893bf3518412ae585e91887c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
index 00f24652c679346b7586a8441eb177f208314d57..0b65883f5792f4d14820ae7e7bce2c13b075e979 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
index e7832fd6c97210cc94d46b2f01bd4e03b7b7e472..34bfe9fa5209d5a91d74b5257bdfbbc82eca3bec 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
index b5f82d68d42e3a81aabea27a692c848b561be2d1..c991a60b0fced30a6193a0c03553f3a07e5d8a90 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
index eb9df87ff2e4a62131adb7ba3b89d73d4b9cf0be..957932e82ce916afae50d6fefe6f742540866efe 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
index bb39a71201cc49c769398fe3a90cbefbf89c4da3..81bd01f1bfc31f85c3dd9579fdff536883a61870 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
index 3ce9fd075684478e7766c623f8662ffaa615f498..323a9bb6d27829223baa167f35411fb162eb9ab5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
index e89254047d14b9c08127c9cb26268cd16ef5d08f..5d0f9f3a7027a2c5d95c28e0cb9cc1057fe5abe9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
index f9b4a30906d85a62bd43ac25004ab6021bc2f67a..4506fccf57498bead3f0e817b55040bf4ce33415 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
index e9c4000d75f4728234c20102ef0ab3188dd3d59d..3f55abe6fce62936b9aba79093886ebaf3e4faa6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
index 9db02abebbd004828e4b89719569ceccbab2d117..e264a8712c1d0e4bcaedf57c7541321dda9eb146 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
index 07071938ebf7c87c1d2edd2ecfddcde1538fbfac..46b8b7d1ab283dbbf15beb414a24e64735ee9e9c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sparc64_hpc_ace_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_template_sparc64_hpc_ace_double.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_template_sparc64_hpc_ace_double.pre
index df45424c023b9ad2d0fa685d5655bcc5741ed678..a51850b7ea96f71a4ef04f98fcd96e877d8d383e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_template_sparc64_hpc_ace_double.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sparc64_hpc_ace_double/nb_kernel_template_sparc64_hpc_ace_double.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "kernelutil_sparc64_hpc_ace_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/make_nb_kernel_sse2_double.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/make_nb_kernel_sse2_double.py
index cbe9ab78d073e090fe11148233422c1177fdd022..19caa7f2887b337a3e345b50b2dcdfad9577339d 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/make_nb_kernel_sse2_double.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/make_nb_kernel_sse2_double.py
@@ -91,7 +91,7 @@ Arch       = 'sse2_double'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse2_double.c
index 8812dbb18f4302f649f4711440d14ddb06dc5bbe..cdf3b32e7ebebc30a3a3461c5da8169abd87c7a7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse2_double.c
index c4604ff1ac5d24d55eeebc00889c47b871ad5f47..89ff73f9d8a308d03ca590c4a49646696782da64 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse2_double.c
index 9060d4332f43c6470091b36be1029ecae465d1a6..ab2d872d566ee5df3d700868c90cf9b83fb41091 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse2_double.c
index 518aa69f5898f7f27ea86cca39fe571455f3c7e0..ef74a4d5d8fa4029eb00e4dad81532af6170b2b7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse2_double.c
index 14a8fed7b80f6434829f05b48b14e1baea12f133..857e64b92c428c309394fcd3d596522c1df0dc21 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse2_double.c
index 46a5a5dca533a8bbc87dd2b815e047023e83bb68..fe335e7eb5017b59ee0bfcce861950ee18be3ca7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse2_double.c
index 0810dced565da170349a8881ecaa3e0f95e9d17c..740ec9467a96050e0ddd805faee3edf0643dd85e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse2_double.c
index ef6a63ef9d1cebbac5e952ebe90c5f0ebe3681d9..a76ae001edad1f03c258b20f7875a2057e71f07a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_double.c
index c33d96bc6adbb05fc1c9153ad90aaf1baaf37333..59db6b438c77ffd5d6c8455144b6769ff2c4a0d3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse2_double.c
index db5fae621a0c9ceda672b6407f346fd326387616..fa3e0da4ba80bd531a928fbc227046d2a8317bd3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse2_double.c
index 674ce0af3bbf08a4e06ac5c604f5f76d4e684931..0055506fedded13e82fa1cead493dc18c6364426 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse2_double.c
index ca74086c090bf5ecc57ec61ecb4908762547a7cf..295bffc7eaf05af344a7533a7942003f8b1aa36f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse2_double.c
index e6e86fce2d589de9b0f45f3be9142d993ec72ea9..6f47000b60ad22251539b07b962cb46992af530e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse2_double.c
index 2a912db4dd0f7c48f0f3b70cb38b3280d10259b5..b1317f8fe1e3f8151cbf9786f1240fa928c78f0f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse2_double.c
index 9842b3da93dd49a7ebe668b206143a725fcea119..dc54caaf35144383c0a1fa43be316bc228ea56dd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse2_double.c
index 7ed18dc6c2fbba187583eeaa57a61524fff3a587..35979633d938aadd97fa5d10111b2eb1e9f3b753 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse2_double.c
index 62f3caf4ef1280e4589b50591f3d26022c264ad7..c23c91f7263617803caba461b350b3653b32dfda 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse2_double.c
index 9ca81f960cb128865422455bfd7300ec85e0378d..c6578b637e2aa2b7e9bcfa026346937c45f00aa8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse2_double.c
index 7ada0d0df5bce93b4ea7a178252e2b5a724bf5a6..ccd9938a35cff65037b3b04d12d7f79b207d9390 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse2_double.c
index 752c5e8eb66ff31c9a240a2d715478b072ecd0f7..8d2311f6df5101953f388f8f4b648df5db8f423d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse2_double.c
index fe1f2fafd2dab99667303cc9a0ba3f95ced9516d..116184f0397befbb609a3fbe37b61844c970abbe 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_double.c
index aa57a7322f23023c015883ea4d03de6148726dfa..115cf6cccef112681a70deb6c6a6e97f96c14f5b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse2_double.c
index 02d110f516e374e19365c05eb1f3dbbba0be8bb9..13b9d2b05a54de647d3491c6fd3cc2a5a607b4e8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_double.c
index 423c3ee39b6c50f4d1e884d970313216269c05db..5bf7e89289f44ff9b19628c4214ac07b536ead83 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse2_double.c
index 457fcfd409db03823d8e1864116ac70d45b4fffe..5fefce74fbb26d3d4e737da9b51175df1664619c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse2_double.c
index eda2975ed329349966e3cc16f5079510487749a2..4fbd5fa3b50b617de03a798abbfa327780fa60e8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse2_double.c
index e76d6333cf057993e01da5e53c270394232229d8..800eb3da8844e7008609bdc0c8941c2d8439526f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse2_double.c
index c6e46d9b0814c29b7c4add28d814ef47685843a9..7bf006635c1dc047d1be6119d5f97cb3d745d435 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse2_double.c
index 9eefcd3cc023d22238178a8224ad9016f44880a4..772e19bf620af9645147800cc2365290cfc05ef4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse2_double.c
index 27016b8096848bf28959e85505dc44da6bf5ee2d..f8ab676307b07bc0d7639928edb3ed760482628b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse2_double.c
index fb8b0baada5f32832240e0e03f4657e254f1c0ef..8d3d82881983a38d8db7b97f1f8700609cef01e5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse2_double.c
index f156207c8ad93bb6e4e914a712f5c3c99e158d17..d110335abd9850a5ce010fc3f4fa8476469a7bb0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse2_double.c
index 437ae4c6de1f5e565c67dd9eb3561e82acbf5970..0bbb0d57c35becda2342eef554eb8123d6d9cb3d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse2_double.c
index e8b09745c41cc6b461b68cde0aa1ed6c72c1def6..4935d8d134f8f58af856bede53154c6758c49cc0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse2_double.c
index a468859a5cd3a6a3531374f0ee6315f7a33e4c41..237f0f56519af0519a0a4fd21275c6049868244a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse2_double.c
index dfd1df2b019f25c827858a3470c2b88e70d5ec2c..128b2903aec13d4fe9ed6e795f4bdd8217a77934 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse2_double.c
index 6c51e1c94afb799bd81eb39f3f07feb50e9e5476..44d8b497147ca2453118ace5429b9c3d0eef17c8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse2_double.c
index 607e82f009ede2f6d05e20839b6dabb2f3e25937..7f1825c74faa6e80b98bea9a656c78348b0ab5d7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse2_double.c
index a78d4c61fed1c61ca0b0b8ae5ca72ee94203667f..0dc558f1d392d9610318019907f2d515664affd2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse2_double.c
index 7ebb37f721a9ba204f592de6a7b7645be89ebb05..a7435e1570df31f2adac37e030a6c59ac6f2018c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse2_double.c
index b05b026adb462927730fb485aac3dcbc5a0ecec7..9b0d40302de99aca94303558afd554cbf0c7d053 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse2_double.c
index 21ca7768803d3f7b0396d747c041ba25fb5fc208..634c61849695e0a17c0eda80e2d27f5c60f4bfff 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse2_double.c
index 9504e112832c6f30f9d19bf580b25f1efe8fe6ba..66f2d2e0a6a4ddf8fa4a1b1173da07e9f2dd43dd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse2_double.c
index 0494150c7e712571216debcc77a4cba7ef891a69..ae04f991a6cef45f25d2615705efa19a0973bcc7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse2_double.c
index cfa8f4006adf4eaa1efcbc51489bbefae2087163..2d64cea06f4510cf067f7bd14a108f334fe2e52c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse2_double.c
index c2a89e1f94d59048dbf8b9a9c83b4ab775398694..59f2359f4ad07c9191c0e5e8795688a68309ed35 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse2_double.c
index e081e211c7168ba9a567fc66290b31ac66373e5c..f10c9748294b08554e07e2a772c500c548dc31c4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse2_double.c
index f61fcc38db65d6ec32251d08d11d37031485b662..99b87bd869e24b22808a776d3179556e4b26ca84 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse2_double.c
index 914b77ab0325b27b48c078ed5ed1008033724a7c..51a9a5cfd3b15f0942382bf025bafbd0ef023770 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse2_double.c
index c7040fd84378eac28f0c2945d2caed7b5e90bbba..d07658be1eef775b11d1da88749513890c6aecc4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse2_double.c
index 4969a4a242e9bc563ca353720ea180eacacfa931..f8da2531c062b94db26e79cd58f64791cb14c266 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse2_double.c
index 0fba7a1ccf05e98e5ca18f5aa49e79a00fd60424..fb7f26036bb351bad619062ddb88de14d58c9e22 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse2_double.c
index 99408aba46b4737a6cd365387163dd0bb6bc2967..5b50e3b5a1c98eefa2ecfca8370292c905305351 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse2_double.c
index 601cb2e9e4ef8da99b19935a3190d010674f6c43..e21fd3049b73f9bf3e7b25a7a1202478e6cfdf26 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse2_double.c
index d2da77794e1f58cfc1e2ec16eea0c14a4178e971..7eadd29cb17a4ce59acf30752ab7d780f8f4ba1b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse2_double.c
index 431a57bf4fd71a7527a18b7093ce00f4be1594d0..2c67cd2837a2e6f7cd2b68bcffcdef03fb96b72d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse2_double.c
index 698aa03506dec714bc5362bac5f6e14f278a0ae5..4601f027e8e95a3308746c7fe0d1969fa051e9c1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse2_double.c
index aa695c79dfd648187f5f6643e398a64ca78b8130..d401d6a5429fc88b044a8ac4ffa8fe39765e1901 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse2_double.c
index 68e85aa367a371ad91b732126d0a0dfeac4a4341..48894e8b41ebb45ffdd08078ac8cefa9d0c0f701 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse2_double.c
index 2850954b3122af725478207b52f2c733acb15ab3..967db3bc59087afa3031c0e101545400a27ede3b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse2_double.c
index 2f7caa6be164ce687fdb9e524108c1ff71b2d22e..567ed928a303b04a745c7b4143cfa07b18f23e61 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse2_double.c
index d49d69e3de471a3e19848623d5cdae33a6d22133..b4daef74f69f6c812dbaf23373e2e2e5e18bfe2a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse2_double.c
index 79c9f96df61b764f5d80372c7f3fb29807a814e2..556acb2b0a1a795184979e0e4321936eeeb4efbf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse2_double.c
index be827df344acd7ec7cf94c622f29e90e6a7e204c..21b9cd29b03b0aa4d3395707c754115df21ad794 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse2_double.c
index fae7c28911a02fd12442140b3360b689798dbf62..0664431ed05dc67665f43f413479138583384823 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse2_double.c
index c096180cf7126dd38b215dff65b372610f06b760..ec5b52544c93dd00ebe1f347694c97789dc15256 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse2_double.c
index 68f1f9d7d259f6437f3041a18d8a8640caec9a4a..332664c50d319986a863ec6dc4bff2bd10105e54 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse2_double.c
index daa666ce4cae11635da02d6950e2955e1d0e087c..170abcf3ae912897c794a92da421bd77c7990ba4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse2_double.c
index db191566594d841cf3b3b7e421569017da0549f3..9d910b5d212fcddbce9d5cb62c320bbaf006e1ba 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse2_double.c
index 70d7c287b13fd34181d9c84d7018779a98206c9a..e875f8931e10e152c243051605576191a4b9472d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse2_double.c
index 75ef13cca3583db0773e164eb7da63e4d1d4ba20..35ab4baff776ceae4305471c1ff2d925d73f6591 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse2_double.c
index 5f37b0a5d0b6c5372c5da5766baf26a5c3289b80..70b7fdfa3581d8ff4ecf931925201f9d96c7dd28 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse2_double.c
index 1289d9d9724271136c5cf83b106c4712a960aadc..79eb0d4812bf225e2e157caffdaee3f0b6f36619 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse2_double.c
index ae1a0f7e6ee51dc084007c9571b5344c03e210ee..5b09862d266261acc2f5146a4f1df3239ed4254c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse2_double.c
index 47ef9a1e79bf55483ed5718564e0f961cf06ac12..7cce908b4924adfe8439e9bf309268653f9bdaf2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse2_double.c
index 9a2b797587895e2fe316ca6911e1ada12ad25986..b758dd530db67ea9dfcc2c42bbef38a08163c1de 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse2_double.c
index 54c5ef2f9ee1d6ab06d26a5434c6546bfb1e6d9e..1b766c69849d5e3ba75472efad05d4244062834e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse2_double.c
index 222313e4a751838966a7b0c5d513298b2dc91d43..fe268170355e34fa63797c9f2398c24d99b90d9c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse2_double.c
index 27e5c525f0d6fe2cd7082b7ff28a771d82839c81..2b3a7790fe3dae0e1056e3cb03cd9475454e8992 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse2_double.c
index df89eddff33f887b970f6804366a4948778a020b..092bcad5b3cf73ac8cd9d7b255182cc825c0366f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse2_double.c
index 1719de5164d2ac821df9ca0d5d87c43f24494c23..974d0f632529319b70a1170b5b94d1472a8f3c4c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse2_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse2_double.c
index d1142948cc19448b6d87d6bddbda02486a605a75..dbd50488242687f0152566635ba1cd5ff65d7037 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse2_double.c
index 9888e8087f1ed4cafd4ce2440a399e09486a36fe..5b0335aa05acd28d7952a59bd4b837f2bb206d1c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse2_double.c
index 6e8d1bc702272fb58bdd457fa315d7a5b2a5a8e3..c7e88d8375ad53d716fb7c85f5c7f242db0fe970 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse2_double.c
index 6d3a35019eee27a068fec7018d12ab7f6ca15e83..251c9efb9c498a67b320fafa05df50fcd9f2d556 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse2_double.c
index 562c79fc434837c13caa184b64767464e8f3f97c..b78f714a3c0cbf60aec6bb95cf7b5dc3d25eb39e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse2_double.c
index 33705c8cdbcd21c55d4c8bc992d51e65fdb16068..184e254953cb43ec79ae47415d820a948982d628 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse2_double.c
index 32c90b295054e4152794213857b790560183d149..9c3fc81e4b647051d702588912932335cdda7237 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse2_double.c
index 1ff8586e8663c26a123ba407b100390da12c8496..7808d272983b0d427cabc24c4a75df05d96bb861 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse2_double.c
index 91b0201e1efb6854115eced679e39c60c117a16a..43754823f687b0a629d710f9adb1792479c95504 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse2_double.c
index 85f3041766b16d3a4e7bf199337bfa0fbb00c3e6..95b06dd30c4929433762413d81cbc5935f6e2150 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse2_double.c
index 810625993b1f370d5362928ed45dacf8657e17b7..9c2b03dc0d88928624bb09318314fd8e5ecb008e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse2_double.c
index e370f0564ef525721682e58048647be1143efb55..202da910c28e54c2d2726be5ebd19507e4fffb11 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse2_double.c
index 54424803d0c685b03b51d4873b7ed5d5ef35376d..95f1c3cd7058e77eab3eff87e7786034e85594af 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse2_double.c
index efca2149d085a98ab6f415af07bf8629d5e0c20f..15645ff847b20f350d81459cbe5fdf968a1a085b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse2_double.c
index 71222b0affc554f6043175e8fd00f28894b4d59d..0b6f1c5a6d11d577db28d1a40d44cd3c59737a64 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse2_double.c
index eb3aebadad47622b874c0e079c04611f78516ce1..ae082d7001a70b63b8cd001b9a475b726ccd3df4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse2_double.c
index 251486d765e2b743af2bd9d9899f6aeca47a17ca..94e5df58c5ae66a5016968969c870c0659f8cab2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse2_double.c
index 8d08235351b8f584b7c644c9c4df8e717364d537..b9edc8d0fd2c997f940fefe70423f69720697137 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse2_double.c
index f1acafed8ff51d62c4212446aded735fc45b8fe1..1708487338782ec930d89d266b1f10d1420533a4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse2_double.c
index c0883d976d88693d6ac52b73204ae65ddf729b77..d8cb317fd186231f05aadfa24a7278c0731d759d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse2_double.c
index 1a5e4682bfa697268f0e9d1cf1a662719f4ecbe7..84bb0a7b8a8f95308f6b55ee51022048cd259114 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse2_double.c
index 382467dce28af9bf640ecfc23bd7aa02d94388ba..34f4035e96feccc1eafef6ccbacbdaab49e70dcc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse2_double.c
index 580376252c230850e3c6e34baa00bc5ae907a3a6..019986eb1f2f6120074f1d5b0e11553eab544bc1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse2_double.c
index 696d541e987baeccd6268b47a7066fbfbdad350f..a5156a37fdcf1d7532bee337dff704ea1d491c6e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse2_double.c
index 534f260ce39c0578c2032c63d3e3cbb33cad4c4c..e014b86c954876398ab56b510ab6931a4b47900e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse2_double.c
index e092b553dc34d7aa69403686d768da7a274390d6..fb65d7208135830d3eb40abdc55f7a99ef4a4e87 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse2_double.c
index 80f282b9da77bc4b77dbe5edb4ea0a35e7828c78..b5cd20e7b9df65d47ff90cf4b8db57bb10617217 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse2_double.c
index e8a739d97b2bad7e8c2afe451bfa0eba743a0397..58322c86a2bb27fc3ee693c142e94c4504a41e59 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse2_double.c
index 4710f11b8561cc05649cb74d833e3553aa370109..cdd40f13ddfcda7a3bdb4d6d7294cbc67e6fa65f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse2_double.c
index 464e690925d8d501358bd6e09e7d96fdcebff454..d8b1b2c44dc754d28c81df80ec80e667558601ea 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse2_double.c
index dbf0fea0736c351559258136bd677a01dff7bfe2..5df361fbc9543560d07ae29d579fe1a5b3827c20 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse2_double.c
index 8f9d31ee3b30ee12f92847b38e576827ba480312..477949fbcf3a5fd6095eb3c05ccd6e53e5aebf9f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse2_double.c
index e8cefe8a8d371b3a9ca78e4451ff826aef67af63..796ed15c40830bb3b0459c11e7c85a4cb20fa3e7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse2_double.c
index 9f0091bc12332351bc89a3b10d15216f8879b6fd..283af30efd06e9bda2daf8fe83211ae5e9b52171 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse2_double.c
index eeb517bf13fa956bfdbb47815b6e265b330114ed..57b65dc9d8f43c196daa2e2819e16f3198ab4d68 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse2_double.c
index 37d656078f2d110fe5a263879b8d6a7ab03335c8..6c8fd1c4bb39b44651942831bba1df23bfdbf6a7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse2_double.c
index dd1b9608f403a20861d1b4cdd182320c0c120b71..11c8d1160656f48efb9569e813d378a2e88f90c4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse2_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse2_double.c
index 19e8a07516f6dc035d86d352b186a0f7ca975455..c1fae00be0eb40aba049ebea051aef01c8c8335c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse2_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse2_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_template_sse2_double.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_template_sse2_double.pre
index 955b06d748bd60fa1a04481949a3d9bb66ca75ae..60df7025debdb56c3e431101f43419139ffe6677 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_template_sse2_double.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_double/nb_kernel_template_sse2_double.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/make_nb_kernel_sse2_single.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/make_nb_kernel_sse2_single.py
index a323ea69019e19861f9ad9d716fc062498c9f4d1..e6972d8faec0c791444a8ec4242379cb70a65ed1 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/make_nb_kernel_sse2_single.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/make_nb_kernel_sse2_single.py
@@ -91,7 +91,7 @@ Arch       = 'sse2_single'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse2_single.c
index 853206e224e972b0b47d11aa53915cdf7f1b3de4..2fa2b63d0f3a1045760129b0fcdc65c757571a2e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse2_single.c
index b149aa2fa4a1cc4fc723be556b2b1b020a6c4feb..8c371c56adc6f40cebf806a87b766fab0df0799e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse2_single.c
index 5d32452902df8c65c851e4ccb7736cf971040e28..559f2b9da9ffefc535cfcdffb95fa365af4cd171 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse2_single.c
index b1f235427ccfd42ae5de46d3afd122b8c0abd195..a7828771384c7dbb91aa2b552faead5378c56ccd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse2_single.c
index 12dfa40c1ba2b495d31c458c8459b989292717b4..fa5eb380c60bd5a7ea00bda3a51d9e9fff853ca8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse2_single.c
index bf2fdde1a1a3f83764d15c9c02eccd2a33a555b4..6ebdc679963a8938f4c8914724e9e7317d28cb85 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse2_single.c
index a954a738feb9c5022d9d4b8fc7cd96ad645fefbe..7d64c94bfaec26db90a5889395288386fe0f0733 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse2_single.c
index 786fe7d97bd1627502f84b95ef2ce613f989e168..a96070cedca728ebfd1211705f53c69d1570ce68 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_single.c
index c049711823e8fb9235ef5a8a65cf0bdb2142fd28..adce5ef032dff3145d05d5cbf5ea3def49185492 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse2_single.c
index 5e496064ccdcde2738a22e28ef8b621026f93d22..19e8b3a699be5088431224643a42ec476cff393f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse2_single.c
index 25c99b41442e0678bbe3841983dc354c542b409e..07eacba8a1e8b42ef0f68958b85ad1d56c89ced5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse2_single.c
index 47d0b6c7b7d5dcbc805121fbd8e05c5c45e24e6c..552bd335f4b7aed800db474099f2766443d666f0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse2_single.c
index 32b6d8f9deb8443a03fa6023e49557dc9e131fca..d4b305b304d383b25cd8560768ac8101fec3ec4b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse2_single.c
index f899aa000105983608a13a014f0fa69c1f5df2e4..f92adc33b5f693a4611151a031c202c62fc3e117 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse2_single.c
index 21327db3037c0dd2f4f7b47a406808aa7f519657..cfe486d60e7b3ecfebb955b01e27fe23e25c6b92 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse2_single.c
index 5e2ef2430c5391ed1ed71819c02cd89b08677186..f946e23b0bf2e4c16d96ab8a99d9f332f8484a9d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse2_single.c
index 78f743c034cd4c8b024fd4b1932fb9a91f5cf7c4..ab558327d1c90ae05c46c059a3065e1c4021e9d7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse2_single.c
index 3d74ff63a8bf1243420df81e782796dc223a9c91..a909b2235dbce063abe4246ad069f795a391bf46 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse2_single.c
index d0686bf46ed28653680a630dd2caea4a4bf370d6..359842f3608d79cfa7d5abdceec7b97d903d7681 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse2_single.c
index d30e9ee57eff6d529437c8e0eee2624372295410..67e0f745495aa135e0941c68c4b85c57ecee8309 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse2_single.c
index b6e78dab0ba6dc0fc610e973948b4527c654daec..c66c45605e46b9555487d994eb35ff7f51221766 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_single.c
index 9cb9e56c79118b7dc102e2dd748ef5d0a3b19907..f7758524d8b12280c756d6d04e7f0ca60f6efb54 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse2_single.c
index 28f093be42c2b58c60d39dd1746d5aefd8c8df4d..3d4ed0cb926ef7d19443df10fd248313b31f373a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_single.c
index 8a45cbe104bef3a62961d455957f7a82a363cfef..8584b28d1763b5df570eb3493561ae10af8f5780 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse2_single.c
index 20af76d96a8643227a763c202bf0f63553319dfb..8792b52be1b035ef209552e2d67c1eb27cb9d7ea 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse2_single.c
index f9be33ad09a3435c50893b7983cfdb8d9708a5dc..768fa56962bbb0506c52318ebb48341f070b9919 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse2_single.c
index 404eaede4c7a5c3f1c6be8193c6508bfb6c2f2bd..cae11b50ade690778f6f815d2963fab1c33d36c7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse2_single.c
index 7931f62221e253abac4a2c472f5d1e7f40aa3335..d91abdb0e660e43443eaf28f880c7cc6086ce5d7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse2_single.c
index 047fb9bdec03dafe4b90fd7ca22ca8a9d534d654..631b2b3e50f7d7ab7fa0bdf639c768a84b658fb1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse2_single.c
index b7035c4bfed168b8dc1282300ce2b8f38fac27a7..9c33f27a3793c9d54765a870baa6e50ace32badd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse2_single.c
index c57c217d2e74a896e137c0d641eb31eb4d323879..f5579dbe69df5c00a82edce496b04217e9054571 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse2_single.c
index 47bf7403e49cdfc4503ab3dc3f09a93b89c0df60..93bb88e5ea064200ede4ec9364c1bb3f56fe74d4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse2_single.c
index 238c93da8b98ab68c9e78e9058d01423a3a4598d..65bdce8d2d4e51160a00e81be79a1d276f82c4a4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse2_single.c
index ae898fbea08e6b2fb27a26b27f21c19064682302..19303f17ccf4d5663f03edc78b19b95cc96c2f50 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse2_single.c
index 2bb109c6109a69ff5dbb182e7539349fb4b877e3..e174141f8efc75f07289e4668b0bba42407754e2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse2_single.c
index 89302e686a1313879e5e2c3fbbeb43d680b5cffa..fb1bb9df71ba125573b34fa1ef211ddd5ef46d0b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse2_single.c
index 8286e490db8eae1c2a39e4ee821b638902af4e40..11d126f7a8fa8f4080b56511609a685b3d0580ad 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse2_single.c
index 02f6dc6103d85fe906b8910c73824948f042d773..82df06fc6d5449bb7ec5241deff682e8787b9705 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse2_single.c
index d97553b603f86940325a929ff7c7b83523144648..acd37322a71cc7dd0eb9b1fbf47cd073825dc83d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse2_single.c
index 5a90b63c1420adfb548126f663316905e6d26d58..64d81512142d657e8a6b6d1c8fc78dd579198a0e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse2_single.c
index e372eb0b0bbf1e19689129f9fe2dfead4a281059..8e0840c1c56c11023ca2caf6f937c7f446bdceb7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse2_single.c
index 7f81f331c7c5fe2899df9cd621d9a9bf618d6fc4..c8aad2b62991c4e06b4ec4885947534bae4f7682 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse2_single.c
index 4bf397d6449bfd3095ed6a317778e8458bf1b360..fef5aa8d6c3a9734c1b6b1ee0de4c091626e4782 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse2_single.c
index 521fb7588094c1bbd066f1225dc832b071769d94..7b93aa8f4847ed8a90900c63e997a5eb1b936b3f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse2_single.c
index 67140cad9ac7738d798522e0ba4024fbda4cff4f..a0c119c66878dc673f73c3528babf6c40133b494 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse2_single.c
index 9cc5a8dc160f5be1ab65b902f1538c787a45ebda..751595b7dab6904b799df95f9d71dcd5550a7ffb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse2_single.c
index 8000a51d0f58658d799da4219ae3c1c5d86ff833..3935045345a2bb5b50f639e15b84b74af5d43b16 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse2_single.c
index 5fdd54de150786ec6c3a3779d938a5d3460e878e..73bb4e7ea8e3d46fc8189c14a85d3514fa46f407 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse2_single.c
index 9c8238521e29dc80dfe653ef8ea461f7129c6386..6739eb77be25a2418aae3e30b715722359ce0fca 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse2_single.c
index 4e4aab3dc75bcf4ef1096b38df063a4257eeb76c..b4c5891366f9d8f9e1e81f204c6c8cc16aaa5e28 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse2_single.c
index 25f30ba465108defe95fcd624de3510a009a01ca..960fe37fe5a29998a9587ff0d95a1da7ed98440b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse2_single.c
index ffc3c2548f61a9779dc6f9452071c2b35434131f..b2bcb88d2d360909b962d9e650160df6b4a13edc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse2_single.c
index 9b800e8263b6e135213b0480d862eac0e5c15834..ae447a37a1b0cd99e9a730d8383d394f0da4b32b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse2_single.c
index 010ec545de953ce38b661b14a496f3a6206025ba..4a1119a9840225e8677f88b9f7163628846ac33b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse2_single.c
index 191b040aaf4e5f7f2ac4a9845ae0ad87e3c6e82e..f3c44599242821b4dde0b46a544cc773d4d86348 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse2_single.c
index bfa897a7e058ba0f9ba7bac1cfd1d02d0c4a48bc..ffe1d8107b38f109d87be4a37ade59abc2a78ff4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse2_single.c
index 1d185854a61d481c7ad0f4d419b3df2af4b92ade..b236c3523bca81dc3240e5d1fed969ba5469f386 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse2_single.c
index a69f4f295f26b972f3fbb7eea6175f061ae4cc91..35d7fef2d34e8ac8f3e504be483a3e25939e1f96 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse2_single.c
index 14849c317e2b561192e1ebe0c838ccf74c9435a2..19f1b57e542d057a0230b7a1e03b03456a91bc85 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse2_single.c
index 91e0f8711bb3c0fe0475846d4c3070a0fe73feb2..99fe9fa0f170b5a3a7f142e378e49bf38586a548 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse2_single.c
index 999d9b042ea947ca0627f7b99e3da5ce2f0a1f55..9fa1ff0baf35c87ae45086255e06145eddce2261 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse2_single.c
index b01cd4c5de12f0d459e92f6b17074a5df49c91bd..d11e30e64c6704b9fc91e3296fecba047dde975c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse2_single.c
index 5427e5dd41b07376a3301fc9172bc514f890f2ed..f8c3dce53409b26cd0304d2f6afafa4b6458a2e0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse2_single.c
index 4a933460f88d762013be9922a7574bf0af9dda83..2992eee82f149b3b4cdc08c3858b79c0d083fa31 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse2_single.c
index bd4a52194fcecde2bc8d8b09007a68f61b641785..a57c3351ee7cec6f9f17c9b5fc8c5faf25ecb465 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse2_single.c
index 72d1955ee36b6431c73782154264e6c2d10951f5..f6c18c17c15afabf10c31797506c6f590158e83c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse2_single.c
index e9bbca794cb2e091b85db6484dedb2b9f6d839a7..2c9dd67673a1a684b41c3e98f2364d4543b404a6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse2_single.c
index 8b5cfaff03482d1ced151f52fc266ce4031728b5..0e3222678a341d23fcf6c38fa64cc89f967699cb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse2_single.c
index bcd18da36013eafcb0ff662f60fb4fdb7b572dcb..e40d11012b7afc2de99dcd1c5246620a2ee9fa5c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse2_single.c
index e78d38eebdefe8a6c13f0c246b5c57a8f7b76ada..f2df475e003e17a256f1b59a6a4d8bd4546d04d9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse2_single.c
index d567138f0c2c4623f9a6285735e0057191dc0fec..4a829b8c8b434b3c4ba85f05a55aebb0c0dbcc59 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse2_single.c
index 083aefee08440277d0b062fbca27ac6c15056731..3a504d2dbc5103cdce58f183012c49c9fa2d02ca 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse2_single.c
index e4c4e08cc3bdd3f4b2e074bdd13eb6fdfd64255f..da226e63e5dd27a39c22d40534656a921bbdc71b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse2_single.c
index cd301e9c5cbe714d206e56d76e8d8f51bfd5ab19..858508a56ff56a93ca168d9ed966b919c7797ba9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse2_single.c
index 6b01187f325ac3c2ba9cc89c0f1ad69f2660a236..60ca1fcad61be01a0562da3cda604fdb351ec466 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse2_single.c
index 0717da1773b273a6b1d97a96febc9b8196f079f2..6cc1ba74c7e462f8737d98f5e38d3a5f63413d1d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse2_single.c
index 3130ba44e2146d81c74bc9998af194d8fca8684b..dc2ad81d8425fcc2c060547bca087fb8c3e2317d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse2_single.c
index 451f96a511411efebaec51c5e7bc62306d2ec7b2..a13a6adf5268fd9a5e62fc266a37827778831868 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse2_single.c
index 3c80b4e2c57aae4a30c63241ad303f7fe233bb41..8d071eb3ea8ad6edf76c69565c7d95e5f1ff3894 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse2_single.c
index a6c2c6e7c3848cfc0fbc548841ef10d3c803a334..3150671dd23a3bf35ab27216ea27f4000d07211c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse2_single.c
index f2b7f698a1706010ae6976ef3ede38dde6626523..3c0f238c81400e0f76c0c5efcbcf13ef8e89767d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse2_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse2_single.c
index 956e8831250bb4fe2304fea294ee6dd1963659c7..ae95e4fda5e45e53a5160dd9e37bfec2d52ba213 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse2_single.c
index 9b1c31f7d08a0716604737a3d47167d364d0cc6f..57c044e31eb953fd4e7840c5eea54cd9e618f4d2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse2_single.c
index 7aa5c6afac520bbdc5605ad3ca78e16511439081..83713c0067d90f5fea3891c01474a728cb665bf3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse2_single.c
index fe3f10de2954601a7e05686e6059a183b0300eba..31186487f0501a72b8b2b5ea26c72b7281900434 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse2_single.c
index 33cd05b198b3bdbcbfbd14c0e5082ce39969c78f..42cb86b5a9dc08e027a51fd563a2ad679f4fcb79 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse2_single.c
index 1e46beb6e1ccc6ebd0744bffbd716a7b0b8f1777..a2039c4a7e7c9d199114ababdced3778a11d89fd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse2_single.c
index d2214aae8572c913e5b17d0beb0fa7f9b7dac28f..1a6510c971988967991fc7ba09c3999d4472ee18 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse2_single.c
index f4d5549fa6274b264b547ddbb2e6acfc997a002d..9d5338c2094023562b9eaa170ab4f135c9bcdd42 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse2_single.c
index 466b808ca3db107f48ca740670bb0eb62f24fcd0..953384753241aae024f900fb92d399162a2d42a9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse2_single.c
index 0c18418edd09de7ed2b3620b51387a5e0a527cc7..de160471c578adc7558d831509917431665e5bb3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse2_single.c
index c2e86560f578166db409d7c503334dbacf27a383..0ad59d4a8c68a5f6bf82a8f7edc91572d7d91edb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse2_single.c
index 9e61af810252a245d16c80c27e4590f96b89f738..9bf37a7a8691162fc8845feef5b4554e68febd87 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse2_single.c
index a3e3b4cc9af41857f7696c2d41dccffe66a06421..20ff041ba67ab101f16eaf249042fd1d87862ad3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse2_single.c
index b063a244c406af162e6236c0a5857522f1edc08f..98e849baf836aafa3cf2233583feb11f64016c96 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse2_single.c
index 07e22ad09dbdf56aa50d210bbd3bdf73ec81611d..270d438cf295f7b955eca1e391d3f9a795ae0213 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse2_single.c
index 7af182f100a587b3c6c4df308a908340749ccdfa..747e4736f4bd51ab6e38610e596adf91f5a75689 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse2_single.c
index 2ed4fb7881a6d8461260b39e0492bad9c1b970f8..866e0c9e55b0bdd93f2c49350acd6865b69bde37 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse2_single.c
index 91c7efaa43d5f73a35ee84d486cb916992bd99cc..4bfd8b93cb4f42ac3be9d0fad48678dbbc7b48f5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse2_single.c
index 180806d27b31b857ac49914c6c85cdb3d2b8ab4e..3c6a1c8293ee0c683ec6db4bfb9cd0258c2c8578 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse2_single.c
index 8dd087a7f4e1cdfc05600d3df1f77e79da8bee89..2275784380b039486df1c8fd97d2e0190ab4fa46 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse2_single.c
index f36e788e0bccc99e6eeecd91e1a61db47d4dfc97..e3ee985e18d8dd0787883e5ac8161ef892a4972b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse2_single.c
index d18752f4bff872c9eb8f93065a8bc3c9468e7624..76e4ec04d271d3d295d091ae12bc0d0ee2266595 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse2_single.c
index 5d85e946bf407ae31ce8be8018e38804e3793933..1d2b4df754a62ae7246ebc9fc5f91333a47b878f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse2_single.c
index 39b37aee6da54f533343ae7d1caf2b4e0cccff83..bd710da46f247a96aa362f8c130435f4fd5ac270 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse2_single.c
index 06fa5e62da75c25cacfca4e38f98d8d0b83aa76e..ffcdac932b3f92a5ea44fbf448adde46b3f4da56 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse2_single.c
index fcc35f9a71d01f09f92c548174274bb27d41bed9..5e63cfb4766a5b51912cae8471ad80a319a0ed21 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse2_single.c
index a9e5dad425b5a323f1fc5b4688a38928efd70391..b5693598cef29a12b6892c58bf1e24c060f2fbb3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse2_single.c
index c8f2f1f79acc379329b8a2cb277bf8e1db42bc1e..2991babb2fc4ee25296d3b743216d0eecb19dc39 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse2_single.c
index 7c4af96763421796efd78c45c6602d5e4143e27a..c2e2bcf73c650b430d2418c59371d45a7540e7d4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse2_single.c
index 830fec7c71dfe8c01c878193dfeb79e639abd825..c387c62e3162cc5cd2766415b0dfa08f05f03985 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse2_single.c
index dabe5ac4174b074cde58e5e579a7d049d416ed53..30a890cb91f3fa0afe63e058bffa1fe7b634f965 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse2_single.c
index 5956e258ff9d209ad39d9f946b764018b4300867..4d86d67b591af31d2ecfeb97cd4d45e5c20dd98c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse2_single.c
index 03ddc09b7ee6fc6acff5c5acc5a18034782aedb6..384985a4a15ebb867268185709b9bf69f22364db 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse2_single.c
index 2bd86b5bf0f1f7673fb464d42797bd1f416553ab..f077dafd91bd483a6129846a1113ffe1e2c9208c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse2_single.c
index 4faaa0474937ced28bab3f678f1063fc6df4068c..dc19519f02d112b5b42c8596025ae4aa83af112a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse2_single.c
index ca604e40bc376cdfca4353285541c2fd6cb73721..ddedae44e8f6edd208ef67977b3d42585e5fac7e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse2_single.c
index 263f1238ed6d2e0c6944d0dc795da6c1c61ef9b0..73c28ae0dbe98ffc14475c632cb3068a5ffe10ab 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse2_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse2_single.c
index dd3720089a3260e615dda6661438edc7e5253a4c..57a7de9795f05ef159789dd8ddc2063c0f650ba2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse2_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse2_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_template_sse2_single.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_template_sse2_single.pre
index 6f7f1b37469559094b3969a854521df72db0a07e..07fb459b7e97e8e99941654bc47c1b6320aa3ebd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_template_sse2_single.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse2_single/nb_kernel_template_sse2_single.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse2_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/make_nb_kernel_sse4_1_double.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/make_nb_kernel_sse4_1_double.py
index e21524a9fff67c8c1c3129904a70299ad3aae12b..beb4e0721a1f1e8417b0249ea9a6a30b6c928306 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/make_nb_kernel_sse4_1_double.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/make_nb_kernel_sse4_1_double.py
@@ -91,7 +91,7 @@ Arch       = 'sse4_1_double'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse4_1_double.c
index fda6370b64d2a325ef35db8a8d642943141e7d22..dce8e75e0d9d17e48a70a4523cc93854a677ff7d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse4_1_double.c
index a8a9e26dac0d5986942062cb7388f1ff5835c917..23f6b5a7aa7930f6f9e1f50f399214112d7a2889 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse4_1_double.c
index 8313e952ad1be126b8f44c030d5e7cbb7b508feb..b242070e3d2bf1937ff7cdd66e5388855c97511a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse4_1_double.c
index a255bbf29390a906314f24e1099e41015c1ec555..a7f2348ee251bc52b84748f879bd6aee7773ebb3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse4_1_double.c
index 4f9ab91c8ceed0f9f297c79786d652860409bd18..413aaefd52683751cef6b1a86a4c4f38ab5678b6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse4_1_double.c
index b04fa0ff4c49939b0abc30f362e94c7c19f90cc0..4031a0f57f55d6f4e6ef14e1b71ac5f92c702234 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse4_1_double.c
index 49e61fb996e648a9a0ffec0601eb1f73ba4b33f1..83a16ba4cd76f895a9309ca8cf932d7dded45cef 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse4_1_double.c
index c58caf11f0df5345b383603615d1af79a0450855..ec6e5d5578d8ad81cc4db3afb3283ec6af37316b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse4_1_double.c
index bf18f815fbb381023ad4751200eb4461ea688f7f..2f378d20ac1a0bb1ffa432b4b7d73c3ee4aec5e4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse4_1_double.c
index a59611c51db41299424a86c336089cf281c90365..994ec4b3fecb55b8a8bb0c750f142f049680d445 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse4_1_double.c
index 0e9d40a732cb6493c500fc0130160206114d7aaf..8a65957d10c297ef30129933132d40e1f2eb316c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse4_1_double.c
index 87090da7897bc085718da40d80e44c1c2eca6924..37a2ae39009e69f26c620e45b1210a505f6adf06 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse4_1_double.c
index 3e3204b427f036c43fc0b3494d50233ca029f4d2..88cf56955df33dc0cb3aac344ac03432f1673cf3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse4_1_double.c
index 0bb5f44459a25c180c0873dd40a6c46f3631f033..2002c44b11bf5911bcfa974dc5ecd833cde990e1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse4_1_double.c
index 45a4e2523d0a1f52164c384e2aecec7f7d1b9fd7..80769b183edc926907dd90ba85ff61e2a965483f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse4_1_double.c
index dacd64d9ef167d5ab277f3db1f28ad0304b3bc01..5b5a78fcfb464225895eaa0f5947ad65799cd56c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse4_1_double.c
index 82efcff86da99d99807bd1ef3b7d8ed37098cff6..f550b7bbad1c611c2dca5b10485fc1ee9274687a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse4_1_double.c
index ad4867d0e92bfb76a3fb42055294cf7fe425cfc7..09a4754a7cfd13d5fc7692537d26aa457532e1eb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse4_1_double.c
index e962313380e380f5da8655b0cd10037e678250e9..4565832ec001ac02ba78e653f5120fa3e75503a1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse4_1_double.c
index 322d2baf2695378653c61264e36f8e7a22448a34..585a0a62daa354bf73796791e9e74bbe4f2d0322 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse4_1_double.c
index f4124877494806787ff7287e268523b22bb57d62..b10faa3206a95fb3691a1814d6dc31f535f99d1e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse4_1_double.c
index a641ec2d02e54e8408fc2991aeeac755f0dfa3e4..18e7b3e0578e2120fc0d00612beec18dc85ace5e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse4_1_double.c
index 70827217a255fb26300204d3869c9d620e49e13c..90a5d37d3cfb5ff0eb88ff075ae169eb55494f7f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse4_1_double.c
index 13a9bc6c7f1a751554227987d494c3433a695fa3..3bdadbc82d318093cefcd4789b959ae22662e03e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse4_1_double.c
index b52a4624e74c6a60075ea41a88222c3ac70f98b6..2ddabbbcc69d1e221706337fab84973b311518c8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse4_1_double.c
index d76b1f08bf5440d66caf6db113ec2ebbc34d8e74..13e7bc8326b65610302042a712d189fef0982c90 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse4_1_double.c
index 5fb922f20b70b419a966f75f61040265463c0395..ef3ffad21040f94b8d3fbbbb9686219ed4964db1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse4_1_double.c
index bda6401f047f8dd40fda16b95948b2531be78654..745d4311b82b402dd9cc8a2f3a084ad154b9b012 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse4_1_double.c
index e9b0aec44ae5b27944f71cf8f628d29e52a4ec13..5c4f4dd1a4a6c19e3ec93fb135de818783602f70 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse4_1_double.c
index de03eeb756443f9ec62510f15d1c8b62aa5b9f71..994c5a7cf635facb3fcdbcddd4a4ac7988b5eecb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse4_1_double.c
index dd87bac2abde019403ae7409da0ff33f9864fcc2..1c36282e85b3fc9004d47d83252a35cb4c682402 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse4_1_double.c
index ef037e43db15db41d1773014f7b44315d39d4c90..98def549db64a4843f9047885cccfa0b9dfe62e9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse4_1_double.c
index 631758fcfec9b4c2b31c6dbb3c6b7ea75f075bc7..91ba17d9bd493c36c52fb2163c6892b563e51acd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse4_1_double.c
index bf3dc0eb49208bdd358018caa0ed2fa05c432c9d..a8a1a7e240ed8180161190d6e5fd9d757a80bbc3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse4_1_double.c
index cc8a50a9defc14bf5e0e0a7fcaeea22d3574142a..736b51b8beef3e257a3060bb44822f7202967700 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse4_1_double.c
index a6464d6412b4d774a7892755c310448638014015..d0066ec102bd2984c8b472b1b4dd6d4d0a888ad4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse4_1_double.c
index a194b53626ab652d7ed2503689516bf52536b9b5..cad3e12a2e82b891725c6f9e88502ee5fb49c5a0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse4_1_double.c
index 3143ae9a3a884f5e35d22dbc24fca0f6ee7f6af9..3eb1cfb38d69c484972a6456e1e63f0f5a0dcba7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse4_1_double.c
index cdce932aa5a5a00b968584f64db2bf179f153e4e..bd7c5f3e77ec7fc25a86dd99c1a3091de383997b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse4_1_double.c
index 760fb1b7e37f391539fce1023ac24d6543903249..2305233d8c54b5a109d9d4275a6d882e0f18b1b0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse4_1_double.c
index f59c181c0c83b81725383101e4cf3e65fb29ec0c..e8ef0a55e36a1e82ecafadc4dd1132e60b553f35 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse4_1_double.c
index 31c91c6164d86814ef6c82c80702ced9a94f1976..9830c47efc21082ba75f2a86e318f8b319e5d882 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse4_1_double.c
index 34176bcf0e969651c4b328fd3d58ca1fc02fd0ae..b10208df0ed522ca6b4a776345997f00644df8d0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse4_1_double.c
index af96896e80b3f854462b66ef05c5d75877160ddc..a65c6ef09958f1e873a4e273a0b7e12f4e5ab2c2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse4_1_double.c
index deb7c926a7eea0ac21e23a02eb110c6889e2d081..11139aae798c11301d5f802bef1ee0b101e36815 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse4_1_double.c
index 5f5d67fc68c2080bce97a0f35611f8146cd8e331..84654e2a2badc1d4624f6d32fd1048c66231c988 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse4_1_double.c
index f0434fac769db638c67ea11a4acbf3b7e6bea1b7..b452e894527b8e8a9b3f9850f9f666fbf62f6912 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse4_1_double.c
index e180367e98548aaa9a48f8492ef9b6acb2c0d099..05ce73fa3dbe5211dacf913a20c3c6295dac3440 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse4_1_double.c
index 4a54ed85cb95bad43b0811161c191e08ac7b7901..45a2f7dbc285617f2b669d0a5036e66dd573eaa6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse4_1_double.c
index b2ee59cbee77617b1409e609d91dcc60fb3bb18f..5ad4314a2f9dce95501f1f5e19660f39842a620a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse4_1_double.c
index 8129d233772225ee2bde243634940c39764f75d1..db3673db31934bf84723e1834994aa22c8ed19b5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse4_1_double.c
index 75f1bbaaf99edd1fdccc2d64efa68ce2f970d8c7..b40a679c7ffb051ffad6da0afbaa3f10608ab915 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse4_1_double.c
index df0e9635c64f56bfb5e464eb5407b3c5621c3bf6..06d86e735b05ed00936d07215774363979608f3f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse4_1_double.c
index 608cc809baad7daa4bea2b92f04822ab805affdf..abc37cdde19c17a32d7a3fd754d23da629255895 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse4_1_double.c
index ec382b412d01270071f7c032910d3bfd70d75bb5..66140c3c9c63be960df76aac20fbb18632b142d3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse4_1_double.c
index ca48ca578788f0e4b99da84662b375a2ba15729f..c425b4d2ee64bd5b7dfdb7fd8a3578b7cb20bb8c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse4_1_double.c
index f1a75923d14950554bc9307fc043b229723d4f2c..19c78ef618d2a69cf6080ab17ed32c780bb02a1f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse4_1_double.c
index 5ffd304773fe988907f1fdce3a26a3737a8a0490..e7c0472d7ac620b8cd6c77c725dc19bd432b754c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse4_1_double.c
index 0c995eb6fa1b7813e0bf403fbb57f3b6e11aba59..12eb7c1f61edc186f7ad33d341906e72a3c7ad6b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse4_1_double.c
index 3d7c067fc8965e61a84c8163377b35466067fcf7..579c8698fbe388d3d89cdc133d88e8d84d6a9c3e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse4_1_double.c
index 47c0ea64d0eea74804b075d6ffbc0d032ae80485..845eb17cb327f9b0dfe9afeeff025e3ce5d036e2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse4_1_double.c
index dfc589b4244a83d76c23da51ca9f1885eedbe9ba..55675a4c85dbc3d62c1966724cbbd121d71e9d5d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse4_1_double.c
index 8e3d2140b80ee2e7ccfe42c0a90036c70d3fd31f..93b45637b9b4bbf79b38ba6126bbeb8c7e2be470 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse4_1_double.c
index 0ca4887c74b75b565b20ffb1ccc6ed15b243f334..df6551875344ebb453e04fb423e40e75a5303c57 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse4_1_double.c
index a08a138286f21a2e6a2757d1e08b0f13636d1d29..ec1b4ff1447a46a56b4b8bdbe760548f09674c72 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse4_1_double.c
index ca5d7eece1a03b46a469841e02f2bc9afe25371e..2f158086dba79a1e187c8b3859f429b9c3e3f6c0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse4_1_double.c
index 5cd1ce8d0528f10ec47b273642219aa96447d450..f9406abee01c06328de1abff239644231db092c9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse4_1_double.c
index 3cfcee40c30c38ccf093904280a4399717d1276c..c0ba4afe889efa5ab87270ce1aa35a9a70142811 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse4_1_double.c
index 90776521fdd0163762ffe9e1a9252400790d2220..ae3114891e535f6daa5e6f72c4a095adf0da4bd0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse4_1_double.c
index 79250959c5b21c52ceebcb74e7bc964f62181e5d..076185ca6ec88f80cadb8d34cc51e172588cf51a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse4_1_double.c
index 26c0aaa2093cc3b2ec8d66d95a12917e54d703c8..d60cfe7291f964957a8d4a5690002b20c084c1fd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse4_1_double.c
index e111e60cd78e834db583ac35c5213418eced4f3d..5e41cae907de6d54af1e159105d4ea9b12792a60 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse4_1_double.c
index d3f5e05824ec01815019f1c709dab235dff14e08..17c88bec50f74a7088ae5a63e8e65bf75b104970 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse4_1_double.c
index 36217ae9dded792cda0653376d0966c95df3db35..15f377a9cc38a8508e21f8c4255a1e8519fa3270 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse4_1_double.c
index 3b5c2e79ff89368cfe9f403daa3b8270cef59c5a..afafe6448f2445ec0c9e2c7e63828841495bac60 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse4_1_double.c
index 2716bcedf236a7fc7e96d2286bc4944061b9d4cd..ccb570f544b399a27bb71afe5d48d12f4d43d1a1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse4_1_double.c
index 5ec61fb7cbde11bcdcca26155625e098000c50e8..44e49c06dfa00a6ebfb2d4c13c149448b05f804f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse4_1_double.c
index 72685887f1427a9b8b1e988e62c3b0ff391a48f6..b8dcc2ceb1777e50c6d48484c6e31ae090959244 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse4_1_double.c
index 053a05c31776b2451b9d04b16dafdd31fea38c56..a129018290aebc7e23d49ed632b11a6dea013936 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse4_1_double.c
index cb104de3883485ce41b39995008d9cd57afc9f66..0bf2bbf6669373e760dee5a5267aff2a2973378e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse4_1_double.c
index d536496afa1c78a340992c17f7eb1d367046f192..b6689776574a41d4426c7fdc8580410527ec8828 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse4_1_double.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse4_1_double.c
index c53a93f68cf2fb4980b054f7e11cea1ec7608e85..2e9f3a544a4c95acb5a1f9b0ef555af05513120c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse4_1_double.c
index 44742f1220e95187879b300c9fa85301d73347e2..a693dc64073bda1cb4c01368ce151c51ed822b26 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse4_1_double.c
index d7023fd33a176c4367e707879ad6ce6d92600c05..324b139da204e0d910b466050d64fc8481388d9f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse4_1_double.c
index 0b93847e880b6057ad8c1546ff40c2c129dd6849..59b442e7116d26dd27e6bb3c6bb967a3625f7f16 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse4_1_double.c
index 7ac6e0dfadf619819c12ad9e8ee311f9b88ffdc0..7cf8aff8cb9c344790a037c44d0f9c4bf8d4516e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse4_1_double.c
index 0fa9ce94b572862e4c50d592add6b2549b6c5614..cab63f7c973c616aae3cd9fbec1b3ea240b6978a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse4_1_double.c
index 239991cf5c88e5344eef4b94caf492c9fc0d4b0f..27f31fe1bf11477af0cc5e6c511995ab3974e18a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse4_1_double.c
index 7aeb8dcf53444056752231b2f4bbd23683d0ec54..b81cbdb388b780b1f78e86e4bce916c8b1d2ca0c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse4_1_double.c
index 08bf8b37cbff34781c0d59ee87c7052f0ff04d2b..14934204fcc9fd958324743339b686088bdadc7d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse4_1_double.c
index d349dbcd90bb841350cc46be88fc0fd3cad3a6aa..654ca46ddba6def0375ccdadc70234c71a45386f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse4_1_double.c
index ec2cd4d46102dabc818f377ed7a7a3a9c33de2b4..65611c96955ff3bff4f346e1067a27615653c727 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse4_1_double.c
index b93a124589a08d6da49f57254ad5ebf8b5238acd..20b755008ff01562443be8bff13e634eeaf84785 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse4_1_double.c
index 643aed1e9d33dd376e3b9f60df6c9565bcdc61ca..9d6e524aecde2a013ffcf76c2b3e431aa73ff686 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse4_1_double.c
index 617ca31edba7bad398c35fb090aff6b197e75c11..ddce172e8c83b54736223dc943c701b01e56063b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse4_1_double.c
index 59f6c93c02a8b37b8d561d601c8eaba9d60efbb3..3647895915d0009baa686d5c026b46a88ff83416 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse4_1_double.c
index 2b4ec8e28b3e3429e60bb8d04452d4c011d2475e..0f10f5e89d21e15f334c3b9883bcc816ec6764b9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse4_1_double.c
index bf7513ac61b9e8c1b3215f03e200eb3a3caf4416..778b93438c1b05349947bc2b0e046f177d3a379a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse4_1_double.c
index 474e7575256873e282299350f823184bdf90ad09..2848a4051946e97090e626dcd3db85f14cd6f9f8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse4_1_double.c
index cf5e4fd1e8e4949e77deb7fc82586ae4978005b4..3c9c47e48966cf72fcd4efffc212a8fd4f6b2410 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse4_1_double.c
index b3f25d9d2ebb182450c88f4e18d6b28b66b44b14..0465aae76fefe373cfaa2b24c62a57883cdb14c9 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse4_1_double.c
index 8b0a6dd93b2c6dc3d9daa53ed2bb451cf053fb0f..bc7a7c34e7f2c10d8f0dcd6c61ecdada37df2131 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse4_1_double.c
index 4a4d75ef4929d0fc238e63cb14e01bb370c30119..ed5838665e938dc51789e2c33a945eea03905eae 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse4_1_double.c
index be8860d1422aa7d0de428c9b0a118e09a032310d..f296090b0a56665b867d86fb480514a29cc673e5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse4_1_double.c
index 276776e004082de8522751bdedd3d297889e613e..3dce797879e8ac9148d4cb841619ce20c8d28ad3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse4_1_double.c
index 9b9152eee99af8956a524c5fe8aef0ffe94b1604..e9e9f81eab08bf729ed349db8e0d0fd8c360d864 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse4_1_double.c
index e8b17350e2f2f72269e7e1c4a64af0134fe34939..1b69b42ef281e9286976b6f519ef3e2327bf53e6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse4_1_double.c
index 25038631fad07d857c15f2d058f8b30417ac17c7..d096cc73a0c1cf955572c227e18268e710986c31 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse4_1_double.c
index 12882917da90440616f499e4bb7529393df6ea03..73cb6374acaf07932fbacc24e1cada5a3894f823 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse4_1_double.c
index bf5000880ff31c7d0b9c3500e205380c17324abc..a69b41edfc5b27f30a06b8b18903b5493c532989 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse4_1_double.c
index 60004363ce8067aeddca0507440f6154c9b97f1d..6cc85781dcb386aa72862d9f6b9307e9abdd9b13 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse4_1_double.c
index 7e8ac3c5403ab3b78ac5f964c44880f9babf49c1..e4e9e23510264dc42ee73643259be7d584329492 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse4_1_double.c
index a607175033ad735cb849de5fb71a7149e8edbc2d..c27a241830d5a20cc7521968d231c575352804f4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse4_1_double.c
index 2a0bde3aff0ef15c1d48d258acfd79a2d887c4da..b9d37090623db11b087a116d4e49dde3fba0b27c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse4_1_double.c
index 7f969660765a189a7ea64df8553d7f94420bc03e..f21fd3c2951ac68e481cae1b2b4a30b2c1dddeed 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse4_1_double.c
index 50b9124caea6eec6ec1fe4c2e4add65606b9c156..1deb4b84b7c029a6a1e24845a2b7574b65445b49 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse4_1_double.c
index 62294146209d7915c14a3a9f3b16facd5c21772a..5ede2b59625fc7d52d33369b9d9aed6ad91b700b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse4_1_double.c
index f9a3cfda2d845923979cf6b0ada72f1310c413ad..e1d2d2ba58897c608ca946153995b1bd9bc5efdd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse4_1_double.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse4_1_double.c
index eb28094a9715127c014cdc01ac2dade75a36511f..90be9fff2543597da316bb5a39b3f92f52a9407e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse4_1_double.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse4_1_double.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_template_sse4_1_double.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_template_sse4_1_double.pre
index c313e80fedd6bf54f378a61aef4f9c8aacdee5f3..b6638e0ccf1c118e98dc79154512796c4af0f63a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_template_sse4_1_double.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_double/nb_kernel_template_sse4_1_double.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_double.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/make_nb_kernel_sse4_1_single.py b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/make_nb_kernel_sse4_1_single.py
index 450d40e9f8bba956743cc9c1f7443c4a12d5d229..0d3b164f6bf10131e09c615ffc660f6b446b6765 100755 (executable)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/make_nb_kernel_sse4_1_single.py
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/make_nb_kernel_sse4_1_single.py
@@ -91,7 +91,7 @@ Arch       = 'sse4_1_single'
 # 'cutoff' means the interaction is set to 0.0 outside the cutoff
 #
 
-FileHeader = create_copyright_header('2012,2013')
+FileHeader = create_copyright_header('2012,2013,2014')
 FileHeader += """/*
  * Note: this file was generated by the GROMACS """+Arch+""" kernel generator.
  */

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse4_1_single.c
index 0dde89400676c8b4c6d678b15648e8083d9d7655..0c099ae66fd81463d53760dd3d1e996a801d1178 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse4_1_single.c
index 9f05188548f4e6a6b909d508e1454c34a2498818..cbf135f2ca9a512fbdfe6e6ee213226dba5a5361 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse4_1_single.c
index 50b4b59710e6e8d596fbca4ac3c036aa7a402c66..b848278d4bcaf6397e0c50d064dc8e66bf0d205a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse4_1_single.c
index 5f135877fed6a0c2dbae9a1ee4a815ce02ccc433..380f875530ed752dc8be75fba4effbbb50dcfacf 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse4_1_single.c
index 08114a675fc07cc53c2a0b83a2c69c46050caac7..a829f851937666f069b6e8c5117da547cdba2db3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse4_1_single.c
index f62a1ea1671ce76eb108206325878635d0a882da..a2ea24bd347f5088ed18952c2d9816cadff8d86e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse4_1_single.c
index d5b89f9efe9f400b87fd2574f46ea42f276d2a4b..62edbeb1dac895e64a12d8233beb2ede417292ce 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse4_1_single.c
index 3b0f1465aa8e53ea2e0f0b661477827eef6d10da..7bcb631e567075e107ddd008784a4dc8037d2505 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse4_1_single.c
index 34e25c2a4fad779a820ebf16afa9541854f83e44..c7bac5959be164fe8bf9f924b80e1f566eb9f4c3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse4_1_single.c
index 995467b6a2389dd13a0352f18fcb111fc6d58232..3477a68e1646edb075fd1fe5a76730aed3b61ccd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse4_1_single.c
index 015bbf03eb621c934b6b56da9c230bd8ba485ca5..3e0425eae59e0933338624d7f9340a4e77e22e11 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse4_1_single.c
index d5d81656a5724981fd7de4c155ab0a51f951de4c..d2b89abf655db5af7e7440e0cff5d5f1b065b123 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse4_1_single.c
index 769c16b42e7fb4952f26a6783f44e6d625ed7c36..73b0970eb60dab12071545379e1738b551b650e5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse4_1_single.c
index 2786360113258badc68526e29734f912af1bec65..56f71274fb34943de7a64bdb59690626abad9e7d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse4_1_single.c
index ba96babbf56ab4ce5aec310a332194ea4e7f73a0..ce27d23a14803b2a0f1843f3494db42432ee089c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse4_1_single.c
index d8c401dc51ff6f5f362a038889ac6f83ad736bec..b31c67d7c621624f7001a69f212cdf144bc6fea0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse4_1_single.c
index d37127e7fea131f12ad500ef2dedd2a524c2a567..4381c31fd7e2b451169222b84ff177997734fc84 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse4_1_single.c
index cce787ac64bae59ee804e9d1898516b9b3112c22..b7dab49dac93d53df6fbd89058b914fe77bde0df 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse4_1_single.c
index cfa9c23cc3e7aac7acc9ed6f1d3180532cb67798..6a4b8c810443b5ec8e4c1372b378258c5e93dfbd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse4_1_single.c
index 7fbfd65bff6d530bd7707ae31cb5f25c07321e01..a4bf214645b53e8f4b5a2f43e2a7da6ae6f5288a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse4_1_single.c
index b947708b59c0e3defe24d2a53783e254006810ad..6f9470c2173c27d3d189d68cde693314aa9967f3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse4_1_single.c
index a2882b798f43c905c11e54c6dbdae100b57cfd91..bc9ad5376fc03cd5a9317fae46999ba3236fb432 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse4_1_single.c
index 385ae34ed61e8e6b6e2e18644615af7341cbcad9..45c17348e7b80932a7fa389f11b6a1d396f5aef1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse4_1_single.c
index c9035c010d5d50a4005303ca21fc8131388244a3..49f7cb3c95ce4c705f7bcf29d91fb0880c792536 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse4_1_single.c
index 5f8b4b6ad559fa64c837bf100b654cac45d1242b..5bab0aaa8a48628e626ccd3a90d9c7afd8b8bed3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse4_1_single.c
index ca8227218a75f0f4c1f06cf9d5de9a362ba35c88..b9d2236dfa47b5e7550dd84061a288533465843e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse4_1_single.c
index b49dc64faa47f114f7a439eea64d88e02a0c8b80..bbf3e1d5822339bb50f4c7eb53fb9bcf58a01b43 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse4_1_single.c
index dbf099afe6a9e4c3eba82abf2acad1d096fa321b..b9b0a31070d7246367db227cc61f2629a3f598f5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse4_1_single.c
index d42357763522bb77746779a4150765f547c6a9c4..c244c9f8f84abb78965089c3c0688bdc404c37a7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse4_1_single.c
index 329319b26d9dc3de8aaa973365f6b86bcf403506..9fb0ae97c239d219ca53e513c6185303375441a2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecCoul_VdwNone_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse4_1_single.c
index 8e94d9c143e5a7e0072eb8995a79e917c5e68ec1..09793028718da534f2421beab8f2a4154340d487 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse4_1_single.c
index 0aaae2811adb5a2b3fc370df92c6aa5e6e489b15..8086afac373765911b94f4f05018cf32a905dad4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse4_1_single.c
index 31ed9d2dcf8a9e12a12f9ab8dca0b90b300f9c9a..d95176dfcd0aa5422348d85ca14f50628c515f42 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse4_1_single.c
index 74230d5c8645d0c50499a0c9a48ffac355087493..b0119ed8c05cc5c14db3fa326f1f353d7fefe743 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse4_1_single.c
index 15806e7f6a10cc4bba7cc1222e40396d875879c8..a2bf297a8e3ac03fbc6d82600f979ffb15f15897 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse4_1_single.c
index 801879aba94881dbaaadf5f939760188fd6b060b..35ed55174450711e4fc71c4ee8d13e12935fb905 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse4_1_single.c
index ac1f8e49273c0ac77aad7f19a062d864b1920a94..6aa133575cb46a86a71632349b8ed662711f1a97 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse4_1_single.c
index 1d6fb501a4bec88277af2c781e92415d3526e5c3..0abdc12952afe26aa9666c6e5054d996f970e18e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse4_1_single.c
index a37706ccf07c3bdd70ba697bb582507ed73b1134..ac22d1d24644f530f320d7e85feca8850b9cad66 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse4_1_single.c
index a9ab3eb4db420f6971c8ba9ebf2561cb4a92bd76..47618245630d9a97cdee0cce1ce50a0c373ee8c2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse4_1_single.c
index 0e3e1c05682d7a7845c23e5884e9e7034594efed..d445df872abc98a571e4fb2aec3973d4787b2816 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse4_1_single.c
index b1b4be725558a5b14cfa5b941955808c6857fd92..c88a1138266eeec16fd980400d88b270cae8b9b4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse4_1_single.c
index b7ff2dbe4093c8b08025d5ddf7f541b4291f013f..20fd0c47d798ef7f33e393d648c276b20c13d331 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse4_1_single.c
index d2a5248769d6d317f9ea22c4fcfff2a73ffd0b76..acf2729031d9f7d3fb2c2e5e29590356f25ef8f1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse4_1_single.c
index 8f998843a95a6fe499e33d5578bb30473a401f28..9c242de75bc5aa7acebddd93801bfb4f2afef0dd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse4_1_single.c
index c88b7ece2419537793d51ac8f8fa030d6dc3fffc..a37e394126a338948057441e8ecc3175cb1cd375 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse4_1_single.c
index 744845b6069256ccd04f1ef916f1afc18ff8a2da..46b04fa92ae355a00c0d6d2f0a423c51f9bd3a4e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse4_1_single.c
index 866d10ec17e45582aebdca2101c07feca8dfe60a..712969203a0b40514929ff6567992b2ca2814fc6 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse4_1_single.c
index 5c16ed677dee1d465636d46f30c2d4f700204eec..52021df7d698b91b0a7ff8fed2fdd78f225c59ef 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse4_1_single.c
index 02be6a2d119d3e41c8420c7a09c87213f66def58..82e0ecfaf36ca64ba8eae02af5b4249643a88d2e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse4_1_single.c
index 784e4012383240b7a6553303f0d98650528afd3c..b00c685093917acf8cd18b4e7b14d4af647fc814 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse4_1_single.c
index 3ffa38a33ec7225b90a394d65ae31ae7415d39cc..06e502ead29caf19c81e86c1510365b4e2093f4c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse4_1_single.c
index b94c40468b64b669b6b93ee7faecaaf679242d8c..b0f728f4666632ba01eb8eb01472db5cc229f78c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse4_1_single.c
index ecc4fa986dc6b4f57a9f1047c9c766aa64df11d7..3ed20f3fd37828e4e9c76b4c8a32e351c3651632 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse4_1_single.c
index c095e1f523e113f6f8a8a970babb0adef24afa71..2ee43d3455686318a81e24311b3b19ce2af2be19 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse4_1_single.c
index d48932a96084cc051b20ce734e92076d01995f0e..5efd1488b0272deee945613128504f508d8dd19a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse4_1_single.c
index 469cb62ada4d92c35c8fece8ddddd1d8d5f5612b..d8fdf1fb6b03a65e09121bdc6113a82b38914e52 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse4_1_single.c
index 4c721af4447510e192f3cee0cf9cc7c4f7f5aedc..3be358525c6b9c9fc1eaf09525e8e557ee7f1eed 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse4_1_single.c
index f2553a88bf92b64bbb30d6358fcab453b5fa7d8c..76682d5d4a28ce9aebfc18ce726749de59b007ed 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse4_1_single.c
index 66ae09b2044e1895fdcc36ee16cf6d4ad08e1d1e..885ddde5bdef049d8b7b886709cf51e483c67b1d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse4_1_single.c
index 8aff4f14ce8608a4c4da348154d54a61136c2881..6900f8af9a34f1c18910aefca31c4d200930c551 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse4_1_single.c
index 7f718d372b1b021c2fe7c91ae21b8d7c293e3d0f..8b8ba0b94bc225d0862dd30eb0dd90e768dc9a69 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse4_1_single.c
index 1d9b2b386d3837d230e7891f5665b8df3e5d18ca..fb379cea5ff1beab4f99443d9162db835d3afa0c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse4_1_single.c
index c160cde1df3db229a3c439beb2dd69e9f61c4c0c..1e63788d9bc8c8872211a01e6c3edb2457311970 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse4_1_single.c
index 8ba0d492c217000a6f269b42eff7435ecdd97bfe..d6238d883f962f058a72c4efde5f99f4a7833b01 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse4_1_single.c
index 17715797e9cc7d83822bb812fdd2af2bd1df2536..16d58e8c3004cb74fc0a62209affcf4072cd156a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse4_1_single.c
index e7358692f36cd6f93b8c69bb4d41de5afe9ef4a4..15e3630be090a7f8e14775fa08d42185b767e4d3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse4_1_single.c
index 0b711d18126873c90c0f2ae23b80120eabec06ca..e85f1169e3bf76e4237b1371e75a7b05269c2476 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse4_1_single.c
index 9d3bf4bbda35abbe4e06b1bb840b2dbad9a2b94a..54f311af681a3989b3d9cd53b60ee71001916e9f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse4_1_single.c
index 126227ec07c57cf174f233d48677c5a835b0783a..9e1eb4b233afefcbb4693119d6ce3dd5de8e47b0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwLJ_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse4_1_single.c
index 09b2c8a189e9d52328cad33a451fe1840b08d555..18968e21b76118805733ee827642b87c3ccd03f2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse4_1_single.c
index 1080c7293bddf4b668aea779060a531f7d207066..4b023686abcf228c587e9a9929672eb166a9099a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse4_1_single.c
index 5792169ef20804db42410960d630605163bb43ec..40711935997f2e85e1021c03c43604785b92fba8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse4_1_single.c
index 72aed21c73f23874604b9d106fee836bc9b7f672..c84f717f4ff3a31ca8334214466c4d07985973aa 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse4_1_single.c
index 484b96077f3b513f2e3d7574587b70129c56b100..5ba362bc37720835b07ee4b47e17b2200c69a3c2 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecEw_VdwNone_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse4_1_single.c
index e1d94c6e3dc7e2544af29cdb63e87a293ec83e0a..899796a855aa66fee30764ef45e36b158f3860fd 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse4_1_single.c
index e561c4030ce4947a62bb47a0af686fea1423cf05..82a951f48d8d95f5fddea17fd8673770866465e5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwLJ_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse4_1_single.c
index 6728516156e07354304d07b0f2494f4ed9214208..225eeba6e04a5fe21e411c8ac22d3572c3bd9765 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecGB_VdwNone_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse4_1_single.c
index b8e6ed800dd1d5e7355cffe7a496a16c98897ec8..9c68c3526dfa3f50ebc3ca61720ce44f275799f8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse4_1_single.c
index 5fea3001709e647442fa9d5943ef4be8c36711d8..cfa6c24ae6299c0fac9b0f3c78fe5cc9e99a3870 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse4_1_single.c
index 43f1be9b1336953139a9b5a338f5532c1bf7ab79..c0b9f63da25b8b97d9540d4e3bede32a5c78299f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_sse4_1_single.c
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse4_1_single.c
index 399a19a3947d6a5907f3b043e6db3bebc8befc77..082ab7fb457a5b559742aa7d0acef035ffcb416d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse4_1_single.c
index d9679e6edfa7f10be768c5d1eea39f377e3b7d03..f067427a356e1a4391ead17a85dd8ed417bfdeeb 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse4_1_single.c
index 2eb4848df2fe403218b4c4b820dc7fbad4b0c7f3..38371253cac999cd415674a15c78d3620ded9958 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecNone_VdwLJ_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse4_1_single.c
index 1afebfa039f8d4ece451def9588ef53bbac9f507..c6ae600077171fdd62660fc72e493bc5b08bb569 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse4_1_single.c
index c2cc9e790ee5f10d339a6469489a4ba3a4824dae..8861646a5fa93c7798d723ecba034b35b7801fad 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse4_1_single.c
index f2279e463521a60e36e162f1a619805826bc5439..274d96ce931103f3f58cf9a8f3c5311e36f4e61e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse4_1_single.c
index 2b69fbdc0556ee1ab7e631eec31013886892ea1c..7635292a97fc7b9353f3454dc6d094ec53b49a6d 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse4_1_single.c
index 209e44ba3477bee799688ddcdd77c560ccbd4d3c..8a95b00cde74f6d0e3a6cae67a7024b0b2cb7ac0 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse4_1_single.c
index 5691ea3e900e0eb90e33d1fba5e6d447a3f90406..8e08e78efae944ff95b5d3ee764ea8a00cfe5611 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse4_1_single.c
index da4566ac2b4a02b92dec6c8970679bc7e5791926..d970e059515501f69e4483b5dcf6fb126af99e5c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse4_1_single.c
index bc8e2cd684a9c4fc6c659be2b97503d96e61586e..71cf2b0c87f8e3ae99e8a58c236cc679a71ae650 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse4_1_single.c
index d13e71f27d2d2d83ba5eaf81f736737c99ee0d5d..ec99f2b87f35897f5a1b332a6672d14e2d05a130 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse4_1_single.c
index 826a2f7af37149019f9e793a332294eccd350296..9194c6fc10631556e5c59e41484712d038d23444 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse4_1_single.c
index fdd483a74bb70e18bdcf05651016b6c4455b23a6..a485983508c69d0eefafffd62fff85027201828f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse4_1_single.c
index 1da9228cbc715f690405485a5c38a4e5883d110c..061dda56e2881cec17f0a4d2249c5e101f6305b8 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse4_1_single.c
index 4766c854850b14f90872935f77e5cbd34c519319..0ad1d33daf75b2a9b43bf008116ab06628abf57c 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse4_1_single.c
index c1fed33908f458514bd98c80765beace4bf47f4e..c3313a6015cf24a46367945b0442b162710a6119 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse4_1_single.c
index b074dbbf266649788f60f9567727450088495e38..be5de4cb6e2ca3416503ae8142af271dd1ce6c83 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse4_1_single.c
index 6a48bd4057d742a06798ead15724167fb87cd3df..d9e37e1b617a481ed1e22122e9b2daceabe15906 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse4_1_single.c
index bb2af8fa65ca7287888deeee6359f4005ec3dc4d..b9d5d744216d246f14ee638b3a8a948cf241cdcc 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse4_1_single.c
index bb5881f7841bab95c140741d69919b6dad79d5ff..7933302c79ccb50993dc56d958bdaec02d40af0a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse4_1_single.c
index 36b90fc188a9122f672728ebd1e6d9d6fff73e57..c6f4fdd50ef3062197892f8fae3cbec0697cd54e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse4_1_single.c
index be4854fdb54ce858a8e15b3400259412359fe82d..42f688867d0986a161f689ebd8cabec1efe97cef 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse4_1_single.c
index d1c8726f0402d1b408d095bc4526d569580c9192..1f754f34389f3e46c01230888c744a47c5f9bab1 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse4_1_single.c
index d420c1bbbecf0332221118d5b12e21d994137f91..90f2e9cfc2c5fb9e0cdbe7d733eedd8b444d9f70 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse4_1_single.c
index 5291a56ecfb0e269ad1617f3c8b230d47ca2d424..a14426f83f44f1f30cb4011fdd4059a9636b1ec3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse4_1_single.c
index c39998025ba1829d6581c4f246f2e9e6bd3a7c74..ad4d248c9254b3a726108714b94aa7857210e5c4 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse4_1_single.c
index 6797d52fc85727b1fec085dbfbfced7f3f80754d..0d11549d7bb4f1c926fe203e2a0489008cbb689e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse4_1_single.c
index 5f9bf92fc29188b5dc5ca338d50beb3679c4e7f6..f3e12dcdbae61205bae0adc6e520a2f3ebb09c4e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse4_1_single.c
index b423463176b464f87f28552463f4cd2ef4858ba8..6aa08b75151d79d3da0f0f6d70699a11bcd1eaed 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse4_1_single.c
index 4e196decd5744a873dbecea8a0e24d7be515aacf..966f4107dd6aff507e5b3aa59b4f1a29db8d2269 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse4_1_single.c
index d1618c5506ef15f02b67d4b40fa96d4cefac8b6a..aa654f4d8a34ef5dc79b367fe10f4694c4dad424 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse4_1_single.c
index 8fd701195ecc26d547debf11853add6858be1cde..7724433021faa488c23f4377828fbd2449418bd5 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwLJ_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse4_1_single.c
index 31b42d4e676f0a54db1802c20d2e326a1d9e3935..80438de803863138b48aa75e7ceea08bfb13ee14 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomP1P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse4_1_single.c
index ec8d44bd684ed53125773264ad95aff618e4978b..8c2be377e6291cdf757cafc0654d6c74aa5c09a7 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW3P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse4_1_single.c
index 8b45d77ddd9c47d8322cc449d34e7fd0ad452434..46935ebd72f3badb30816510a978599b800a73e3 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW3W3_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse4_1_single.c
index 9d629b5e09be72c9b7fd0d5a65435956f821a3d3..64a549e163e9343872f0ef4bb0adf8b64e38e73a 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW4P1_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse4_1_single.c b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse4_1_single.c
index 232ec1debe63611fdf6a8f5b8a51293efa2d2618..9f000ef7df6c4746681fbdcf87e6b3a6406d9d5b 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse4_1_single.c
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_ElecRF_VdwNone_GeomW4W4_sse4_1_single.c
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2012,2013, by the GROMACS development team, led by
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -43,7 +43,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_template_sse4_1_single.pre b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_template_sse4_1_single.pre
index 669739d531f191a7c4a2cd1ce05c92d81a5f79cf..0f19087e5704a7e97517f7f408dd059f7db0715f 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_template_sse4_1_single.pre
+++ b/src/gromacs/gmxlib/nonbonded/nb_kernel_sse4_1_single/nb_kernel_template_sse4_1_single.pre
@@ -44,7 +44,7 @@
 
 #include "../nb_kernel.h"
 #include "types/simple.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 
 #include "gromacs/simd/math_x86_sse4_1_single.h"

diff --git a/src/gromacs/gmxlib/nonbonded/nonbonded.c b/src/gromacs/gmxlib/nonbonded/nonbonded.c
index 8df440f068a403635a2896a43e34c4f8983cbc89..ad687f77b44fcf9e28129695525163e37412859e 100644 (file)
--- a/src/gromacs/gmxlib/nonbonded/nonbonded.c
+++ b/src/gromacs/gmxlib/nonbonded/nonbonded.c
@@ -47,7 +47,7 @@
 #include "txtdump.h"
 #include "gromacs/utility/smalloc.h"
 #include "ns.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/math/utilities.h"
 #include "macros.h"
 #include "gromacs/utility/cstringutil.h"

diff --git a/src/gromacs/gmxlib/orires.c b/src/gromacs/gmxlib/orires.c
index 2741240abc38e02a243f5f4c869c48d5f85d2766..cdae972a9aa9e3b1564ab63b268a9d0a23aecabd 100644 (file)
--- a/src/gromacs/gmxlib/orires.c
+++ b/src/gromacs/gmxlib/orires.c
@@ -40,7 +40,7 @@
 
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "types/commrec.h"
 #include "network.h"
 #include "orires.h"

diff --git a/src/gromacs/gmxlib/pbc.c b/src/gromacs/gmxlib/pbc.c
index a26adfcb6ae0909eda9349dd3247142371551931..1f8b98713fcfb7f08b3a779e7fbb137f1e38f821 100644 (file)
--- a/src/gromacs/gmxlib/pbc.c
+++ b/src/gromacs/gmxlib/pbc.c
@@ -43,7 +43,7 @@
 
 #include "typedefs.h"
 #include "types/commrec.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/math/utilities.h"
 #include "pbc.h"
 #include "gromacs/utility/smalloc.h"

diff --git a/src/gromacs/gmxlib/princ.c b/src/gromacs/gmxlib/princ.c
index 19cc04844d313ee73cc81564c0019ea9419425d3..3aa70f6dc3f12878ad24a9c41d096ed643eed868 100644 (file)
--- a/src/gromacs/gmxlib/princ.c
+++ b/src/gromacs/gmxlib/princ.c
@@ -40,7 +40,7 @@
 #endif
 
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "txtdump.h"
 #include "princ.h"

diff --git a/src/gromacs/gmxlib/restcbt.c b/src/gromacs/gmxlib/restcbt.c
index 9181ec514466cf0f59333befb3952790799df367..1309959efefc7cdce2c43a06208cf0c23ae704bb 100644 (file)
--- a/src/gromacs/gmxlib/restcbt.c
+++ b/src/gromacs/gmxlib/restcbt.c
@@ -38,7 +38,7 @@
 #include <math.h>
 #include <assert.h>
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/math/utilities.h"
 #include "txtdump.h"
 #include "bondf.h"

diff --git a/src/gromacs/gmxlib/rmpbc.c b/src/gromacs/gmxlib/rmpbc.c
index e717a591dc451cd141fe51c18ab06be68c5ea3fa..ecac68430cfce5fe879f8a2063d3231c89a5db6f 100644 (file)
--- a/src/gromacs/gmxlib/rmpbc.c
+++ b/src/gromacs/gmxlib/rmpbc.c
@@ -42,7 +42,7 @@
 #include "mshift.h"
 #include "pbc.h"
 #include "rmpbc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 #include "gromacs/utility/futil.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxlib/sfactor.c b/src/gromacs/gmxlib/sfactor.c
index d186fa2ca46b46faf05439c62b571ddc2f563a33..9bb0b9eaa6de08075de0a8cb302785237f81efa8 100644 (file)
--- a/src/gromacs/gmxlib/sfactor.c
+++ b/src/gromacs/gmxlib/sfactor.c
@@ -42,7 +42,7 @@
 #include "gromacs/utility/futil.h"
 #include "gromacs/math/utilities.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 #include "index.h"
 #include "gromacs/fileio/strdb.h"

diff --git a/src/gromacs/gmxlib/txtdump.c b/src/gromacs/gmxlib/txtdump.c
index 314eef2d3dbbdefb7694ad9270a7da424c2637da..96dde56e6eda763dd0e46aec64aa522fe43791ee 100644 (file)
--- a/src/gromacs/gmxlib/txtdump.c
+++ b/src/gromacs/gmxlib/txtdump.c
@@ -47,7 +47,7 @@
 #include "types/commrec.h"
 #include "names.h"
 #include "txtdump.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxlib/typedefs.c b/src/gromacs/gmxlib/typedefs.c
index 92b10975ca885d062640ad4db30beb4c6e3a0db6..87b2e637146beeb16b2ab95161cc50e403a1a421 100644 (file)
--- a/src/gromacs/gmxlib/typedefs.c
+++ b/src/gromacs/gmxlib/typedefs.c
@@ -43,7 +43,7 @@
 
 #include "gromacs/utility/smalloc.h"
 #include "symtab.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "macros.h"
 #include <string.h>

diff --git a/src/gromacs/gmxpreprocess/addconf.c b/src/gromacs/gmxpreprocess/addconf.c
index e2d7a17e619ec75431ee630e49a3932dc65eb00a..85a9091ae51f311013363cb3c0dc32895a2e4109 100644 (file)
--- a/src/gromacs/gmxpreprocess/addconf.c
+++ b/src/gromacs/gmxpreprocess/addconf.c
@@ -42,7 +42,7 @@
 
 #include <stdlib.h>
 #include <string.h>
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 #include "gromacs/utility/smalloc.h"
 #include "types/commrec.h"

diff --git a/src/gromacs/gmxpreprocess/calc_verletbuf.c b/src/gromacs/gmxpreprocess/calc_verletbuf.c
index 0ea860be07d889ab0744f7f81451beed2b4931d3..7db60fae413ccd19d5861d30bf47e2f410962775 100644 (file)
--- a/src/gromacs/gmxpreprocess/calc_verletbuf.c
+++ b/src/gromacs/gmxpreprocess/calc_verletbuf.c
@@ -45,7 +45,7 @@
 #include "typedefs.h"
 #include "physics.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "coulomb.h"
 #include "calc_verletbuf.h"
 #include "../mdlib/nbnxn_consts.h"

diff --git a/src/gromacs/gmxpreprocess/convparm.c b/src/gromacs/gmxpreprocess/convparm.c
index 503e3f615e3664ad39d43f2f173d1c7e762b8b13..0758399822f3e6d3a8af39f4e98f0ad22ce544d3 100644 (file)
--- a/src/gromacs/gmxpreprocess/convparm.c
+++ b/src/gromacs/gmxpreprocess/convparm.c
@@ -43,7 +43,7 @@
 #include <string.h>
 
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "typedefs.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxpreprocess/gen_ad.c b/src/gromacs/gmxpreprocess/gen_ad.c
index c90e7341e1108217aa0172abcb4a0e415c231330..ba1e3d42dc3db79ca60441fbbc19c598b54ad72f 100644 (file)
--- a/src/gromacs/gmxpreprocess/gen_ad.c
+++ b/src/gromacs/gmxpreprocess/gen_ad.c
@@ -48,7 +48,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/cstringutil.h"
 #include "gromacs/fileio/confio.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "toputil.h"
 #include "topio.h"

diff --git a/src/gromacs/gmxpreprocess/gen_maxwell_velocities.c b/src/gromacs/gmxpreprocess/gen_maxwell_velocities.c
index 4fb1976893b4813534d0b9e31bdda04b9c2fea13..7dc3f87a414bfbc9c55d093591c3407c069d9978 100644 (file)
--- a/src/gromacs/gmxpreprocess/gen_maxwell_velocities.c
+++ b/src/gromacs/gmxpreprocess/gen_maxwell_velocities.c
@@ -43,7 +43,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "physics.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gen_maxwell_velocities.h"
 #include "mtop_util.h"
 

diff --git a/src/gromacs/gmxpreprocess/gen_vsite.c b/src/gromacs/gmxpreprocess/gen_vsite.c
index 5e95eecb39dd1222c230d814f4ad4777d3de7156..98414db3e98ca16b771fffcce7400afcc87da35b 100644 (file)
--- a/src/gromacs/gmxpreprocess/gen_vsite.c
+++ b/src/gromacs/gmxpreprocess/gen_vsite.c
@@ -46,7 +46,7 @@
 #include "gen_vsite.h"
 #include "resall.h"
 #include "add_par.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "toputil.h"
 #include "physics.h"
 #include "index.h"

diff --git a/src/gromacs/gmxpreprocess/genconf.c b/src/gromacs/gmxpreprocess/genconf.c
index d08c77a64cebcb004a967b831dd7d31dace4ce0f..15f93a1960737d8c8b54ccfbcfd55bdc44cf9f3f 100644 (file)
--- a/src/gromacs/gmxpreprocess/genconf.c
+++ b/src/gromacs/gmxpreprocess/genconf.c
@@ -41,7 +41,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/fileio/confio.h"
 #include "gromacs/commandline/pargs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/random/random.h"
 #include "gromacs/math/3dview.h"
 #include "txtdump.h"

diff --git a/src/gromacs/gmxpreprocess/genhydro.c b/src/gromacs/gmxpreprocess/genhydro.c
index 6382a2c39a1f877e1c477b07ddaedc44e933c8c5..b5a8e831b21eac7cb1d23ed4f751c4208d56afd8 100644 (file)
--- a/src/gromacs/gmxpreprocess/genhydro.c
+++ b/src/gromacs/gmxpreprocess/genhydro.c
@@ -45,7 +45,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/fileio/confio.h"
 #include "symtab.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/utility/fatalerror.h"
 #include "physics.h"

diff --git a/src/gromacs/gmxpreprocess/grompp.c b/src/gromacs/gmxpreprocess/grompp.c
index d0e452ccc2bc0a58e53bc50a6788defab12b5a43..f70be76f99fc58d09c8f918b630917d4021a3940 100644 (file)
--- a/src/gromacs/gmxpreprocess/grompp.c
+++ b/src/gromacs/gmxpreprocess/grompp.c
@@ -59,7 +59,7 @@
 #include "grompp-impl.h"
 #include "gromacs/random/random.h"
 #include "gromacs/gmxpreprocess/gen_maxwell_velocities.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/commandline/pargs.h"
 #include "splitter.h"

diff --git a/src/gromacs/gmxpreprocess/hackblock.c b/src/gromacs/gmxpreprocess/hackblock.c
index b74e294bf2e00a5d8b4d7c6ea771b241c2a4adef..4d576a1651d871111a650360131648ecab7d4c61 100644 (file)
--- a/src/gromacs/gmxpreprocess/hackblock.c
+++ b/src/gromacs/gmxpreprocess/hackblock.c
@@ -42,7 +42,7 @@
 #include <string.h>
 #include "hackblock.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 
 /* these MUST correspond to the enum in hackblock.h */

diff --git a/src/gromacs/gmxpreprocess/hizzie.c b/src/gromacs/gmxpreprocess/hizzie.c
index 0bb9e1873c289c848a1a9d7f237a4380f06e8b70..eb588fefa88ec6d2a7b141a08656933eb1e46d67 100644 (file)
--- a/src/gromacs/gmxpreprocess/hizzie.c
+++ b/src/gromacs/gmxpreprocess/hizzie.c
@@ -44,7 +44,7 @@
 #include "typedefs.h"
 #include "gromacs/fileio/pdbio.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "physics.h"
 #include "toputil.h"
 #include "pdb2top.h"

diff --git a/src/gromacs/gmxpreprocess/insert-molecules.cpp b/src/gromacs/gmxpreprocess/insert-molecules.cpp
index 590672eabf24a3ec9dc65dcb68d5d67e6849d4c5..c590cd3ed18886a1e60252dfcc12cfcdf8d63038 100644 (file)
--- a/src/gromacs/gmxpreprocess/insert-molecules.cpp
+++ b/src/gromacs/gmxpreprocess/insert-molecules.cpp
@@ -50,7 +50,7 @@
 #include "gromacs/utility/futil.h"
 #include "atomprop.h"
 #include "names.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/gmxlib/conformation-utilities.h"

diff --git a/src/gromacs/gmxpreprocess/nm2type.c b/src/gromacs/gmxpreprocess/nm2type.c
index 4ec089dddc8b43b58052ccfcfeb40b59f427bc1a..a382ec7b2a5c0c0706da02b7fd9f7dbedfed84ca 100644 (file)
--- a/src/gromacs/gmxpreprocess/nm2type.c
+++ b/src/gromacs/gmxpreprocess/nm2type.c
@@ -48,7 +48,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/fileio/confio.h"
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/math/3dview.h"
 #include "txtdump.h"
 #include "readinp.h"

diff --git a/src/gromacs/gmxpreprocess/pdb2gmx.c b/src/gromacs/gmxpreprocess/pdb2gmx.c
index c37a0069b7ae2a6e7275f37c31a361d609cbecc9..d0897d07ccb59a40da5531a3607e79e9cf295ee7 100644 (file)
--- a/src/gromacs/gmxpreprocess/pdb2gmx.c
+++ b/src/gromacs/gmxpreprocess/pdb2gmx.c
@@ -52,7 +52,7 @@
 #include "gromacs/utility/cstringutil.h"
 #include "gromacs/fileio/confio.h"
 #include "symtab.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxpreprocess/pdb2top.cpp b/src/gromacs/gmxpreprocess/pdb2top.cpp
index 6f6bc008411c75cb6fe0867e2b4481f8341b92ce..50d2a7856e34528d0eebbc7923b9c7f28a374935 100644 (file)
--- a/src/gromacs/gmxpreprocess/pdb2top.cpp
+++ b/src/gromacs/gmxpreprocess/pdb2top.cpp
@@ -42,7 +42,7 @@
 #include <math.h>
 #include <ctype.h>
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "symtab.h"

diff --git a/src/gromacs/gmxpreprocess/protonate.c b/src/gromacs/gmxpreprocess/protonate.c
index ebd539a7f8dc0cdcd6836c83d610a4fe9eac0916..7f2970bb28f161174b04f3a75f9c104abf3ab0dd 100644 (file)
--- a/src/gromacs/gmxpreprocess/protonate.c
+++ b/src/gromacs/gmxpreprocess/protonate.c
@@ -51,7 +51,7 @@
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
 #include "index.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "hackblock.h"
 
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/gmxpreprocess/readir.c b/src/gromacs/gmxpreprocess/readir.c
index 328e8d89b78b175f9e4f7422439d28ea7f46f194..ac177033cbfee295cc8813d5491d2d926896133f 100644 (file)
--- a/src/gromacs/gmxpreprocess/readir.c
+++ b/src/gromacs/gmxpreprocess/readir.c
@@ -56,7 +56,7 @@
 #include "toputil.h"
 #include "index.h"
 #include "network.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "mtop_util.h"
 #include "chargegroup.h"

diff --git a/src/gromacs/gmxpreprocess/readpull.c b/src/gromacs/gmxpreprocess/readpull.c
index ad4582eea9f272828ff442ca21312c41e94b4901..2fbe8dbfa32c3dbe0d1dc4c8c4f9ef11c1ddfcf8 100644 (file)
--- a/src/gromacs/gmxpreprocess/readpull.c
+++ b/src/gromacs/gmxpreprocess/readpull.c
@@ -44,7 +44,7 @@
 #include "gromacs/utility/cstringutil.h"
 #include "princ.h"
 #include "gromacs/utility/futil.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "typedefs.h"
 #include "names.h"

diff --git a/src/gromacs/gmxpreprocess/readrot.c b/src/gromacs/gmxpreprocess/readrot.c
index e446177541cee905d91575abbd3915c9f2be1889..b18a45734b8a58b071645ae58131092dd5523fe9 100644 (file)
--- a/src/gromacs/gmxpreprocess/readrot.c
+++ b/src/gromacs/gmxpreprocess/readrot.c
@@ -38,7 +38,7 @@
 #include <config.h>
 #endif
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "readir.h"
 #include "names.h"

diff --git a/src/gromacs/gmxpreprocess/solvate.cpp b/src/gromacs/gmxpreprocess/solvate.cpp
index 7f3f09c3a583cf6c2bbf0e9848713d5e17404dc2..ae7ce1187a6735862ac4200e56bec8263757cb9a 100644 (file)
--- a/src/gromacs/gmxpreprocess/solvate.cpp
+++ b/src/gromacs/gmxpreprocess/solvate.cpp
@@ -50,7 +50,7 @@
 #include "gromacs/utility/futil.h"
 #include "atomprop.h"
 #include "names.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/commandline/pargs.h"
 #include "gromacs/gmxlib/conformation-utilities.h"

diff --git a/src/gromacs/gmxpreprocess/sortwater.c b/src/gromacs/gmxpreprocess/sortwater.c
index abcac867ccba39666d99852faf78caea81b6afc4..0c77bf56e4a7e9ee4a4189a0c45d7653dac36bd1 100644 (file)
--- a/src/gromacs/gmxpreprocess/sortwater.c
+++ b/src/gromacs/gmxpreprocess/sortwater.c
@@ -41,7 +41,7 @@
 #include <stdlib.h>
 
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "sortwater.h"
 
 #include "gromacs/random/random.h"

diff --git a/src/gromacs/gmxpreprocess/specbond.c b/src/gromacs/gmxpreprocess/specbond.c
index e14d21a9dc8c3714cbd951022c5633eab3ebb2c1..79d54b3636c9a9096f977297c1771120cf1f3e95 100644 (file)
--- a/src/gromacs/gmxpreprocess/specbond.c
+++ b/src/gromacs/gmxpreprocess/specbond.c
@@ -49,7 +49,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "specbond.h"
 #include "pdb2top.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 
 gmx_bool yesno(void)

diff --git a/src/gromacs/gmxpreprocess/vsite_parm.c b/src/gromacs/gmxpreprocess/vsite_parm.c
index d7b4a5fef1a733f58ed8072775ad14b2fd8d5b92..774bfa0ae87a0ea0ffe76b3d17792ca4f17ddabe 100644 (file)
--- a/src/gromacs/gmxpreprocess/vsite_parm.c
+++ b/src/gromacs/gmxpreprocess/vsite_parm.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "resall.h"
 #include "add_par.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "toputil.h"
 #include "physics.h"
 #include "index.h"

diff --git a/src/gromacs/gmxpreprocess/x2top.c b/src/gromacs/gmxpreprocess/x2top.c
index 75fe7b02f74a56f94bec411b9168823823b4170c..74014311d4735caa662bd95a49db18516e494057 100644 (file)
--- a/src/gromacs/gmxpreprocess/x2top.c
+++ b/src/gromacs/gmxpreprocess/x2top.c
@@ -47,13 +47,8 @@
 #include "macros.h"
 #include "bondf.h"
 #include "gromacs/fileio/gmxfio.h"
-#include "gromacs/utility/cstringutil.h"
-#include "gromacs/utility/smalloc.h"
 #include "gromacs/fileio/confio.h"
 #include "physics.h"
-#include "gromacs/commandline/pargs.h"
-#include "vec.h"
-#include "gromacs/math/3dview.h"
 #include "txtdump.h"
 #include "readinp.h"
 #include "names.h"
@@ -61,12 +56,15 @@
 #include "pdb2top.h"
 #include "gen_ad.h"
 #include "gpp_nextnb.h"
-#include "vec.h"
 #include "atomprop.h"
 #include "hackblock.h"
 #include "nm2type.h"
 
+#include "gromacs/commandline/pargs.h"
+#include "gromacs/math/vec.h"
+#include "gromacs/utility/cstringutil.h"
 #include "gromacs/utility/fatalerror.h"
+#include "gromacs/utility/smalloc.h"
 
 char atp[7] = "HCNOSX";
 #define NATP (asize(atp)-1)

diff --git a/src/gromacs/imd/imd.c b/src/gromacs/imd/imd.c
index 1210cdf2f6c8cdf5569e2c63c296311b86200d51..e05379ccb7c1880087099ce16b6419b14d3355d5 100644 (file)
--- a/src/gromacs/imd/imd.c
+++ b/src/gromacs/imd/imd.c
@@ -61,19 +61,20 @@
 
 #include "imd.h"
 #include "imdsocket.h"
-#include "gromacs/utility/smalloc.h"
 #include "network.h"
 #include "mdrun.h"
 #include "sighandler.h"
 #include "gmx_ga2la.h"
-#include "gromacs/fileio/xvgr.h"
 #include "gromacs/mdlib/groupcoord.h"
 #include "gromacs/fileio/confio.h"
 #include "mtop_util.h"
 #include "names.h"
 #include "gromacs/timing/wallcycle.h"
 
+#include "gromacs/fileio/xvgr.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/fatalerror.h"
+#include "gromacs/utility/smalloc.h"
 
 /*! \brief How long shall we wait in seconds until we check for a connection again? */
 #define IMDLOOPWAIT 1

diff --git a/src/gromacs/legacyheaders/update.h b/src/gromacs/legacyheaders/update.h
index 398e505af525714dc61bceb1da266412016039bd..6a4679f4f736c22d78d9dcfe09b949fd90159759 100644 (file)
--- a/src/gromacs/legacyheaders/update.h
+++ b/src/gromacs/legacyheaders/update.h
@@ -42,8 +42,6 @@
 #include "mshift.h"
 #include "tgroup.h"
 #include "network.h"
-#include "vec.h"
-
 
 #ifdef __cplusplus
 extern "C" {

diff --git a/src/gromacs/linearalgebra/matrix.c b/src/gromacs/linearalgebra/matrix.c
index eda4e452cbef8987e9d4e0f665342c99a2d68bd0..1645daeb7f2e68bedb4b4b794e1834b7921c3401 100644 (file)
--- a/src/gromacs/linearalgebra/matrix.c
+++ b/src/gromacs/linearalgebra/matrix.c
@@ -42,8 +42,6 @@
 
 #include <stdio.h>
 
-#include "gromacs/legacyheaders/vec.h"
-
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/utility/smalloc.h"
 
@@ -239,7 +237,7 @@ double multi_regression(FILE *fp, int nrow, double *y, int ncol,
         {
             ax += a0[i]*a[j][i];
         }
-        chi2 += sqr(y[j]-ax);
+        chi2 += (y[j] - ax) * (y[j] - ax);
     }
 
     sfree(atx);

diff --git a/src/gromacs/math/3dview.c b/src/gromacs/math/3dview.c
index 0d09032362e41ef41bf932e4fd32ec5dcf36536d..add531074b6a16ad09b9a31d386bf31f0e3e87fe 100644 (file)
--- a/src/gromacs/math/3dview.c
+++ b/src/gromacs/math/3dview.c
@@ -45,7 +45,7 @@
 #include "macros.h"
 #include "physics.h"
 #include "pbc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 #include "gromacs/utility/fatalerror.h"
 

diff --git a/src/gromacs/math/CMakeLists.txt b/src/gromacs/math/CMakeLists.txt
index dfaba940839bb735a23240361b01a9f1d1062f16..35ec2bb28f9efe32a2139370f34e8f339e5f998d 100644 (file)
--- a/src/gromacs/math/CMakeLists.txt
+++ b/src/gromacs/math/CMakeLists.txt
@@ -40,6 +40,7 @@ set(MATH_PUBLIC_HEADERS
     gmxcomplex.h
     do_fit.h
     utilities.h
+    vec.h
     )
 gmx_install_headers(math ${MATH_PUBLIC_HEADERS})
 

diff --git a/src/gromacs/math/do_fit.c b/src/gromacs/math/do_fit.c
index c2b10b9b308191688c40a2e5f6db1db180a1e691..86f4a9bcd5f6e89a4e4ed7936c8ffdd834fb1fb3 100644 (file)
--- a/src/gromacs/math/do_fit.c
+++ b/src/gromacs/math/do_fit.c
@@ -38,7 +38,7 @@
 
 #include "gromacs/math/utilities.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "txtdump.h"
 
 #include "gromacs/linearalgebra/nrjac.h"

diff --git a/src/gromacs/legacyheaders/vec.h b/src/gromacs/math/vec.h
similarity index 99%
rename from src/gromacs/legacyheaders/vec.h
rename to src/gromacs/math/vec.h
index 8687faa88c9f10ee3bd3c85f04028423431d08ab..412600134af5682d0424f45fe4adeb26fc62a380 100644 (file)
--- a/src/gromacs/legacyheaders/vec.h
+++ b/src/gromacs/math/vec.h
@@ -34,8 +34,8 @@
  * To help us fund GROMACS development, we humbly ask that you cite
  * the research papers on the package. Check out http://www.gromacs.org.
  */
-#ifndef _vec_h
-#define _vec_h
+#ifndef GMX_MATH_VEC_H
+#define GMX_MATH_VEC_H
 
 /*
    collection of in-line ready operations:
@@ -115,11 +115,11 @@
 
 #include <math.h>
 
-#include "types/simple.h"
-#include "typedefs.h"
-#include "physics.h"
+#include "../legacyheaders/types/simple.h"
+#include "../legacyheaders/physics.h"
+
+#include "utilities.h"
 
-#include "../math/utilities.h"
 #include "../utility/fatalerror.h"
 
 #ifdef __cplusplus
@@ -905,4 +905,4 @@ static gmx_inline void tmvmul_ur0(const matrix a, const rvec src, rvec dest)
 
 #endif
 
-#endif  /* _vec_h */
+#endif

diff --git a/src/gromacs/mdlib/adress.c b/src/gromacs/mdlib/adress.c
index ba290c1431ea76786bccf45b25eb0fd198219ece..d749162d2dccebf6ebab251bc597996a3a5665b6 100644 (file)
--- a/src/gromacs/mdlib/adress.c
+++ b/src/gromacs/mdlib/adress.c
@@ -39,7 +39,7 @@
 #include "pbc.h"
 #include "types/simple.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 #include "gromacs/utility/fatalerror.h"
 

diff --git a/src/gromacs/mdlib/calcmu.c b/src/gromacs/mdlib/calcmu.c
index 27e3065070607f8ee8bf8b59946b5196c5aac957..c35a0e9529a33c514d1a70b5a594d0380910e505 100644 (file)
--- a/src/gromacs/mdlib/calcmu.c
+++ b/src/gromacs/mdlib/calcmu.c
@@ -44,7 +44,7 @@
 
 #include "typedefs.h"
 #include "network.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "physics.h"
 #include "calcmu.h"
 #include "gmx_omp_nthreads.h"

diff --git a/src/gromacs/mdlib/calcvir.c b/src/gromacs/mdlib/calcvir.c
index 7eebb8768c2628e4ad99cfd18942ccc019ca34cf..8a0edcfba19e4f1d1e09e1b4d4b27032c92b3afa 100644 (file)
--- a/src/gromacs/mdlib/calcvir.c
+++ b/src/gromacs/mdlib/calcvir.c
@@ -40,7 +40,7 @@
 #endif
 
 #include "force.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "mshift.h"
 #include "macros.h"
 

diff --git a/src/gromacs/mdlib/clincs.c b/src/gromacs/mdlib/clincs.c
index 01e30da5325f16b4323ffdaab1e164646cb603b3..7dc2df842246d6f2b7a020794a161cbc62f28fa8 100644 (file)
--- a/src/gromacs/mdlib/clincs.c
+++ b/src/gromacs/mdlib/clincs.c
@@ -46,7 +46,7 @@
 #include "constr.h"
 #include "copyrite.h"
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "mdrun.h"
 #include "nrnb.h"

diff --git a/src/gromacs/mdlib/constr.c b/src/gromacs/mdlib/constr.c
index aac7cc7d54ac9f597501c11dd662db9bc3b92910..bf6d117950b5d9a90abedbf9762dc6151323b0b3 100644 (file)
--- a/src/gromacs/mdlib/constr.c
+++ b/src/gromacs/mdlib/constr.c
@@ -48,7 +48,7 @@
 #include "mdrun.h"
 #include "nrnb.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "physics.h"
 #include "names.h"
 #include "txtdump.h"

diff --git a/src/gromacs/mdlib/coupling.c b/src/gromacs/mdlib/coupling.c
index 3a3b71a9a6a6a9c6cb24aa663ad102703747500d..395f1d088e09f54f92be3e49ef904459007a6fa1 100644 (file)
--- a/src/gromacs/mdlib/coupling.c
+++ b/src/gromacs/mdlib/coupling.c
@@ -43,7 +43,7 @@
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
 #include "update.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 #include "physics.h"
 #include "names.h"

diff --git a/src/gromacs/mdlib/csettle.c b/src/gromacs/mdlib/csettle.c
index 68f9b3268f10502b49b7fabfbb6929bd4b2be8fe..4d4378c525ea2fb8647181f18b613e6f1e0620b1 100644 (file)
--- a/src/gromacs/mdlib/csettle.c
+++ b/src/gromacs/mdlib/csettle.c
@@ -40,7 +40,7 @@
 
 #include <math.h>
 #include <stdio.h>
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "constr.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/utility/smalloc.h"

diff --git a/src/gromacs/mdlib/domdec.c b/src/gromacs/mdlib/domdec.c
index 8760f143aa7ca8cb5656d1ea081cb6f5e7806bad..f262572838ca1bf718925d8c8cd972ba886530dd 100644 (file)
--- a/src/gromacs/mdlib/domdec.c
+++ b/src/gromacs/mdlib/domdec.c
@@ -48,7 +48,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/fatalerror.h"
 #include "network.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "domdec.h"
 #include "domdec_network.h"
 #include "nrnb.h"

diff --git a/src/gromacs/mdlib/domdec_box.c b/src/gromacs/mdlib/domdec_box.c
index 1302ffec3b0dd0cc301578faaf1567a12ee2cd3b..9917e994f9da18f3853c8db87c381aeb5f1c4899 100644 (file)
--- a/src/gromacs/mdlib/domdec_box.c
+++ b/src/gromacs/mdlib/domdec_box.c
@@ -38,7 +38,7 @@
 #endif
 
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "types/commrec.h"
 #include "domdec.h"

diff --git a/src/gromacs/mdlib/domdec_con.c b/src/gromacs/mdlib/domdec_con.c
index c09ec52fdd5e76f9b7ed015dfdf9dc7fe09fb927..288ea8de3f030a1f161e072aac02faf264afc090 100644 (file)
--- a/src/gromacs/mdlib/domdec_con.c
+++ b/src/gromacs/mdlib/domdec_con.c
@@ -39,7 +39,7 @@
 #include <assert.h>
 
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "constr.h"
 #include "types/commrec.h"
 #include "domdec.h"

diff --git a/src/gromacs/mdlib/domdec_setup.c b/src/gromacs/mdlib/domdec_setup.c
index 5da2d3a58ee71a39beec0880a9a561e06af0348a..a7bdaaca632f46dd4251047c8f1b99fcfbf444f0 100644 (file)
--- a/src/gromacs/mdlib/domdec_setup.c
+++ b/src/gromacs/mdlib/domdec_setup.c
@@ -46,7 +46,7 @@
 #include "physics.h"
 #include "gromacs/utility/smalloc.h"
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "names.h"
 
 /* Margin for setting up the DD grid */

diff --git a/src/gromacs/mdlib/domdec_top.c b/src/gromacs/mdlib/domdec_top.c
index 1e361293125f83407a64610ce6c41e14ee1f1766..798db14e321c10f73e370a4556575f430c7808b2 100644 (file)
--- a/src/gromacs/mdlib/domdec_top.c
+++ b/src/gromacs/mdlib/domdec_top.c
@@ -45,7 +45,7 @@
 #include "domdec_network.h"
 #include "names.h"
 #include "network.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "chargegroup.h"
 #include "gromacs/gmxlib/topsort.h"

diff --git a/src/gromacs/mdlib/ebin.c b/src/gromacs/mdlib/ebin.c
index 88466da73a2f451aa6104b5f59603ce13186e55d..7541827eeb5f56315adb90c642be5e07ad764156 100644 (file)
--- a/src/gromacs/mdlib/ebin.c
+++ b/src/gromacs/mdlib/ebin.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/fatalerror.h"
 #include "ebin.h"
 #include "gromacs/math/utilities.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "physics.h"
 
 t_ebin *mk_ebin(void)

diff --git a/src/gromacs/mdlib/ewald.c b/src/gromacs/mdlib/ewald.c
index 4992003fa07443ee6346b7b0bf1b46cf490489cf..9c065b28a9f67675b9295301506c1f2d286b0d9d 100644 (file)
--- a/src/gromacs/mdlib/ewald.c
+++ b/src/gromacs/mdlib/ewald.c
@@ -44,7 +44,7 @@
 
 #include "typedefs.h"
 #include "types/commrec.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/fatalerror.h"
 #include "physics.h"

diff --git a/src/gromacs/mdlib/expanded.c b/src/gromacs/mdlib/expanded.c
index c2baf6ba27809b17e06c73ff442b2334e373d9db..5d29f85ed9bf583ffa6e34c6d197f3422c72fef4 100644 (file)
--- a/src/gromacs/mdlib/expanded.c
+++ b/src/gromacs/mdlib/expanded.c
@@ -45,7 +45,7 @@
 #include "txtdump.h"
 #include "pbc.h"
 #include "chargegroup.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 #include "mshift.h"
 #include "mdrun.h"

diff --git a/src/gromacs/mdlib/force.c b/src/gromacs/mdlib/force.c
index 951170911fd1362aaeae86f7e1e46ab6ba5f793d..e01c27ee2c99ee1c4167f09929f676c265c489fe 100644 (file)
--- a/src/gromacs/mdlib/force.c
+++ b/src/gromacs/mdlib/force.c
@@ -38,12 +38,12 @@
 #include <config.h>
 #endif
 
+#include <assert.h>
 #include <math.h>
 #include <string.h>
-#include <assert.h>
+
 #include "typedefs.h"
 #include "macros.h"
-#include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "physics.h"
 #include "force.h"
@@ -63,8 +63,10 @@
 #include "qmmm.h"
 #include "gmx_omp_nthreads.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/timing/wallcycle.h"
 #include "gromacs/utility/fatalerror.h"
+#include "gromacs/utility/smalloc.h"
 
 void ns(FILE              *fp,
         t_forcerec        *fr,

diff --git a/src/gromacs/mdlib/forcerec.c b/src/gromacs/mdlib/forcerec.c
index 5594c6a6223079cccbb416c96d33ff2fb35f79c8..2a5b7654e6276d844c7985f33dfd330d814a648f 100644 (file)
--- a/src/gromacs/mdlib/forcerec.c
+++ b/src/gromacs/mdlib/forcerec.c
@@ -43,7 +43,7 @@
 #include <assert.h>
 #include "typedefs.h"
 #include "types/commrec.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/math/utilities.h"
 #include "macros.h"
 #include "gromacs/utility/smalloc.h"

diff --git a/src/gromacs/mdlib/genborn.c b/src/gromacs/mdlib/genborn.c
index 559169659298c40f504d71f5c0955f8a93ca2837..e29eb366f7bb0e77940ddbdd95dc7eb1e8db4155 100644 (file)
--- a/src/gromacs/mdlib/genborn.c
+++ b/src/gromacs/mdlib/genborn.c
@@ -46,7 +46,7 @@
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
 #include "genborn.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/pdbio.h"
 #include "names.h"
 #include "physics.h"

diff --git a/src/gromacs/mdlib/genborn_allvsall.c b/src/gromacs/mdlib/genborn_allvsall.c
index 766341efad9b0621674a83d2bb1903ad6f3ce8c5..0af757ffe0e50b7c375e0b4fadc81e6c7d7b572a 100644 (file)
--- a/src/gromacs/mdlib/genborn_allvsall.c
+++ b/src/gromacs/mdlib/genborn_allvsall.c
@@ -41,7 +41,7 @@
 #include <math.h>
 #include "types/simple.h"
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 
 #include "network.h"

diff --git a/src/gromacs/mdlib/genborn_allvsall_sse2_double.c b/src/gromacs/mdlib/genborn_allvsall_sse2_double.c
index ff2c3aefd44dfae96f25155b54b0d9d7ea1dabe0..841869152e4736c15c01ec2f519e622b3f80cc3d 100644 (file)
--- a/src/gromacs/mdlib/genborn_allvsall_sse2_double.c
+++ b/src/gromacs/mdlib/genborn_allvsall_sse2_double.c
@@ -41,7 +41,7 @@
 #include <math.h>
 #include "types/simple.h"
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 
 #include "network.h"

diff --git a/src/gromacs/mdlib/genborn_allvsall_sse2_single.c b/src/gromacs/mdlib/genborn_allvsall_sse2_single.c
index 1f17f499aa55341f0c0341282f6f30034a4a3517..3a01a9b3caf08e01c0b579c7e33099070e8ebe9f 100644 (file)
--- a/src/gromacs/mdlib/genborn_allvsall_sse2_single.c
+++ b/src/gromacs/mdlib/genborn_allvsall_sse2_single.c
@@ -41,7 +41,7 @@
 #include <math.h>
 #include "types/simple.h"
 
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 
 #include "network.h"

diff --git a/src/gromacs/mdlib/genborn_sse2_double.c b/src/gromacs/mdlib/genborn_sse2_double.c
index 345933f3e4b2b64dfac228e95eaa6dc9e113479c..a8f367598569c6129beb9daa1df89566a8c3d7bb 100644 (file)
--- a/src/gromacs/mdlib/genborn_sse2_double.c
+++ b/src/gromacs/mdlib/genborn_sse2_double.c
@@ -44,7 +44,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "genborn.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/pdbio.h"
 #include "names.h"
 #include "physics.h"

diff --git a/src/gromacs/mdlib/genborn_sse2_single.c b/src/gromacs/mdlib/genborn_sse2_single.c
index 8e1b69bc89588514936dc862efd32c8ecb864506..17aca7ee7c219e583c7387711a2700f809771018 100644 (file)
--- a/src/gromacs/mdlib/genborn_sse2_single.c
+++ b/src/gromacs/mdlib/genborn_sse2_single.c
@@ -44,7 +44,7 @@
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "genborn.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/pdbio.h"
 #include "names.h"
 #include "physics.h"

diff --git a/src/gromacs/mdlib/groupcoord.c b/src/gromacs/mdlib/groupcoord.c
index dae82018af8c037e07534b8e8a2fbd14593ee52a..82932760f29969bc477bc16a777c8d51162b54db 100644 (file)
--- a/src/gromacs/mdlib/groupcoord.c
+++ b/src/gromacs/mdlib/groupcoord.c
@@ -42,7 +42,7 @@
 #include "groupcoord.h"
 #include "network.h"
 #include "pbc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "gmx_ga2la.h"
 

diff --git a/src/gromacs/mdlib/init.c b/src/gromacs/mdlib/init.c
index 0504d07a07916da83f71aaace2102a849531f145..aab7d29105f61b6474cc8ee4a74261319b145bb9 100644 (file)
--- a/src/gromacs/mdlib/init.c
+++ b/src/gromacs/mdlib/init.c
@@ -42,7 +42,7 @@
 #include "typedefs.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "mvdata.h"
 #include "gromacs/utility/fatalerror.h"
 #include "symtab.h"

diff --git a/src/gromacs/mdlib/md_support.c b/src/gromacs/mdlib/md_support.c
index 1558e45fa49755ad9f560a6334fbcb0cc841dff2..720a8a8acebb173a0e949a024d493ce8e5549c2b 100644 (file)
--- a/src/gromacs/mdlib/md_support.c
+++ b/src/gromacs/mdlib/md_support.c
@@ -39,8 +39,6 @@
 #endif
 
 #include "typedefs.h"
-#include "gromacs/utility/cstringutil.h"
-#include "gromacs/utility/smalloc.h"
 #include "mdrun.h"
 #include "domdec.h"
 #include "mtop_util.h"
@@ -50,7 +48,10 @@
 #include "md_logging.h"
 #include "md_support.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/timing/wallcycle.h"
+#include "gromacs/utility/cstringutil.h"
+#include "gromacs/utility/smalloc.h"
 
 /* Is the signal in one simulation independent of other simulations? */
 gmx_bool gs_simlocal[eglsNR] = { TRUE, FALSE, FALSE, TRUE };

diff --git a/src/gromacs/mdlib/mdebin.c b/src/gromacs/mdlib/mdebin.c
index 106161d8c0310186b3bdef22eea564fe02f30677..a8e4a0fb6cabfc27cc915856f5a40a6e48bf2036 100644 (file)
--- a/src/gromacs/mdlib/mdebin.c
+++ b/src/gromacs/mdlib/mdebin.c
@@ -47,7 +47,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "physics.h"
 #include "gromacs/fileio/enxio.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "disre.h"
 #include "network.h"
 #include "names.h"

diff --git a/src/gromacs/mdlib/minimize.c b/src/gromacs/mdlib/minimize.c
index ff73269d75e3fbec51650c3008b6088eb490bc04..46b84172b202e39a85d2d414ce0c0282f9ffa037 100644 (file)
--- a/src/gromacs/mdlib/minimize.c
+++ b/src/gromacs/mdlib/minimize.c
@@ -53,7 +53,7 @@
 #include "typedefs.h"
 #include "update.h"
 #include "constr.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "tgroup.h"
 #include "mdebin.h"
 #include "vsite.h"

diff --git a/src/gromacs/mdlib/nbnxn_atomdata.c b/src/gromacs/mdlib/nbnxn_atomdata.c
index 84a1c761032e76bd1694f1c7c955ddd5b016f65f..dc632c5fbfd50e9f66875abf9a5380c9010d90f4 100644 (file)
--- a/src/gromacs/mdlib/nbnxn_atomdata.c
+++ b/src/gromacs/mdlib/nbnxn_atomdata.c
@@ -43,7 +43,7 @@
 #include <string.h>
 
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nbnxn_consts.h"
 #include "nbnxn_internal.h"
 #include "nbnxn_atomdata.h"

diff --git a/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c b/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c
index 24ef4a96b016e923610a73d4d36b7336dc466f2e..f0b7df70be4f2b1d2ab72ad6e97041680af848fa 100644 (file)
--- a/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c
+++ b/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c
@@ -40,7 +40,7 @@
 
 #include "types/simple.h"
 #include "gromacs/math/utilities.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "typedefs.h"
 #include "force.h"
 #include "nbnxn_kernel_gpu_ref.h"

diff --git a/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c b/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c
index 0be4be644d987e9eecf22b6a64f4457644cfe755..14c620c9b1351120c1a4d02e31795692b32316a9 100644 (file)
--- a/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c
+++ b/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c
@@ -40,7 +40,7 @@
 #include <assert.h>
 
 #include "typedefs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "force.h"
 #include "gmx_omp_nthreads.h"

diff --git a/src/gromacs/mdlib/nbnxn_search.c b/src/gromacs/mdlib/nbnxn_search.c
index 392ba8cb583ea1529139c15f5846ccd99b7cb5c8..31fc34bc5ea6abb7c33f10e1eea1e3c766e22c6b 100644 (file)
--- a/src/gromacs/mdlib/nbnxn_search.c
+++ b/src/gromacs/mdlib/nbnxn_search.c
@@ -45,7 +45,7 @@
 #include "types/commrec.h"
 #include "macros.h"
 #include "gromacs/math/utilities.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "nbnxn_consts.h"
 /* nbnxn_internal.h included gromacs/simd/macros.h */

diff --git a/src/gromacs/mdlib/nlistheuristics.c b/src/gromacs/mdlib/nlistheuristics.c
index f5266aace7b40ddcf4014bb010657e119f019ee4..42d81ece8400c521a9db58d50fe0b87dbefcc402 100644 (file)
--- a/src/gromacs/mdlib/nlistheuristics.c
+++ b/src/gromacs/mdlib/nlistheuristics.c
@@ -41,7 +41,7 @@
 #include "typedefs.h"
 #include "types/nlistheuristics.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 void reset_nlistheuristics(gmx_nlheur_t *nlh, gmx_int64_t step)
 {

diff --git a/src/gromacs/mdlib/ns.c b/src/gromacs/mdlib/ns.c
index 3a36007d646c926fd1b39e3a47e69a6ddf78eacf..9ed1d8db91901228e1a9e91db1da4903fa03b97b 100644 (file)
--- a/src/gromacs/mdlib/ns.c
+++ b/src/gromacs/mdlib/ns.c
@@ -45,7 +45,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
 #include "gromacs/math/utilities.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "types/commrec.h"
 #include "network.h"
 #include "nsgrid.h"

diff --git a/src/gromacs/mdlib/nsgrid.c b/src/gromacs/mdlib/nsgrid.c
index b709a1eecac976f088b06d9614d842a79f61d8e5..366beca6f992b48d52bd3e8dd5a59d2a93b28dfb 100644 (file)
--- a/src/gromacs/mdlib/nsgrid.c
+++ b/src/gromacs/mdlib/nsgrid.c
@@ -47,7 +47,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "nsgrid.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "network.h"
 #include "domdec.h"
 #include "pbc.h"

diff --git a/src/gromacs/mdlib/perf_est.c b/src/gromacs/mdlib/perf_est.c
index def9c5b310235deae3399b5550cb52754c9a7901..febdeb5d04233bc8783c9a8b4ef430aed211d8ad 100644 (file)
--- a/src/gromacs/mdlib/perf_est.c
+++ b/src/gromacs/mdlib/perf_est.c
@@ -42,7 +42,7 @@
 
 #include "perf_est.h"
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "mtop_util.h"
 #include "types/commrec.h"
 #include "nbnxn_search.h"

diff --git a/src/gromacs/mdlib/pme.c b/src/gromacs/mdlib/pme.c
index 6259694f81145733a96873736ff2f618ef4e7d1c..2c22d4b76254ed46632ae9be0e982962fe190ef9 100644 (file)
--- a/src/gromacs/mdlib/pme.c
+++ b/src/gromacs/mdlib/pme.c
@@ -69,7 +69,7 @@
 
 #include "typedefs.h"
 #include "txtdump.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "coulomb.h"
 #include "gromacs/utility/fatalerror.h"

diff --git a/src/gromacs/mdlib/pme_pp.c b/src/gromacs/mdlib/pme_pp.c
index ddaeba64aceda71512d0fef44e107bf4922aa179..4721349a7d02edc621efdf72f2446d71059e7aaf 100644 (file)
--- a/src/gromacs/mdlib/pme_pp.c
+++ b/src/gromacs/mdlib/pme_pp.c
@@ -47,7 +47,7 @@
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pme.h"
 #include "network.h"
 #include "domdec.h"

diff --git a/src/gromacs/mdlib/qm_gamess.c b/src/gromacs/mdlib/qm_gamess.c
index c3b92a041f37560ad8a5c1cc86e8d0eeef4d1c2e..de7bdf7adfd212f0ee3b53bc82b8259baf575b9e 100644 (file)
--- a/src/gromacs/mdlib/qm_gamess.c
+++ b/src/gromacs/mdlib/qm_gamess.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "physics.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "force.h"
 #include "invblock.h"
 #include "gromacs/fileio/confio.h"

diff --git a/src/gromacs/mdlib/qm_gaussian.c b/src/gromacs/mdlib/qm_gaussian.c
index 72df479b44df993f8e1b3febf1c489d249712c7d..f9259bf3facee8d550e99fd2a8016677cbe6da1d 100644 (file)
--- a/src/gromacs/mdlib/qm_gaussian.c
+++ b/src/gromacs/mdlib/qm_gaussian.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "physics.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "force.h"
 #include "invblock.h"
 #include "gromacs/fileio/confio.h"

diff --git a/src/gromacs/mdlib/qm_mopac.c b/src/gromacs/mdlib/qm_mopac.c
index bb68fc53549d5acfecd1a79467227f19581ecd01..7abd61284010f9d82bd6d4e79fbcabebb85df3ce 100644 (file)
--- a/src/gromacs/mdlib/qm_mopac.c
+++ b/src/gromacs/mdlib/qm_mopac.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "physics.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "force.h"
 #include "invblock.h"
 #include "gromacs/fileio/confio.h"

diff --git a/src/gromacs/mdlib/qm_orca.c b/src/gromacs/mdlib/qm_orca.c
index 7b58d28c20f9e7a06253464bb0495b7e88843f41..dd89a19ce435f3ad70b90c8bb617a25451218294 100644 (file)
--- a/src/gromacs/mdlib/qm_orca.c
+++ b/src/gromacs/mdlib/qm_orca.c
@@ -44,7 +44,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "physics.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "force.h"
 #include "invblock.h"
 #include "gromacs/fileio/confio.h"

diff --git a/src/gromacs/mdlib/qmmm.c b/src/gromacs/mdlib/qmmm.c
index 71df3d78d22781b1c987e1f45e6eb9423ab8532f..a5582fab5839b1555860888d33870f274cc7eeff 100644 (file)
--- a/src/gromacs/mdlib/qmmm.c
+++ b/src/gromacs/mdlib/qmmm.c
@@ -45,7 +45,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "physics.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "force.h"
 #include "invblock.h"
 #include "gromacs/fileio/confio.h"

diff --git a/src/gromacs/mdlib/rf_util.c b/src/gromacs/mdlib/rf_util.c
index 98c1636c3f24b2b89d2edf77a6df2522394f964b..a3e3eda0fc6c7b68a6b955df181e08129ea470af 100644 (file)
--- a/src/gromacs/mdlib/rf_util.c
+++ b/src/gromacs/mdlib/rf_util.c
@@ -41,7 +41,7 @@
 #include "typedefs.h"
 #include "force.h"
 #include "names.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "physics.h"
 #include "copyrite.h"
 #include "pbc.h"

diff --git a/src/gromacs/mdlib/shakef.c b/src/gromacs/mdlib/shakef.c
index f3a459a58a11a2104ca0fa0255f58d069f5520fa..5b692804f27457039b816ceb5b627b4b772331d1 100644 (file)
--- a/src/gromacs/mdlib/shakef.c
+++ b/src/gromacs/mdlib/shakef.c
@@ -43,7 +43,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "pbc.h"
 #include "txtdump.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 #include "constr.h"
 

diff --git a/src/gromacs/mdlib/shellfc.c b/src/gromacs/mdlib/shellfc.c
index 1121ee28228daf3e4c1c520662a37f5b703f6c3b..28e99822074f419cdebd1857679e15ac2ac8eceb 100644 (file)
--- a/src/gromacs/mdlib/shellfc.c
+++ b/src/gromacs/mdlib/shellfc.c
@@ -45,7 +45,7 @@
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/fatalerror.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "txtdump.h"
 #include "force.h"
 #include "mdrun.h"

diff --git a/src/gromacs/mdlib/sim_util.c b/src/gromacs/mdlib/sim_util.c
index 7358793df7d0965a54e8d6273741c9babbf1c5d5..a9bcc6878cc470b058e981a757ed8269c4a334f3 100644 (file)
--- a/src/gromacs/mdlib/sim_util.c
+++ b/src/gromacs/mdlib/sim_util.c
@@ -53,7 +53,7 @@
 #include "txtdump.h"
 #include "pbc.h"
 #include "chargegroup.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "nrnb.h"
 #include "mshift.h"
 #include "mdrun.h"

diff --git a/src/gromacs/mdlib/stat.c b/src/gromacs/mdlib/stat.c
index 3d16a16e514066f04f9c6b7fd2c9f8a5b5fb41c2..8ea8058a97df9fb6b697314013d0dff924ed4231 100644 (file)
--- a/src/gromacs/mdlib/stat.c
+++ b/src/gromacs/mdlib/stat.c
@@ -47,7 +47,7 @@
 #include "txtdump.h"
 #include "names.h"
 #include "physics.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/math/utilities.h"
 #include "force.h"
 #include "vcm.h"

diff --git a/src/gromacs/mdlib/tables.c b/src/gromacs/mdlib/tables.c
index 6d8aff2040e81a1637ec2cd740d32cd7914d32b7..6c96f379e4e042343bb0d01e0073e23182477d08 100644 (file)
--- a/src/gromacs/mdlib/tables.c
+++ b/src/gromacs/mdlib/tables.c
@@ -46,7 +46,7 @@
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/fileio/xvgr.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "network.h"
 #include "physics.h"
 #include "force.h"

diff --git a/src/gromacs/mdlib/tgroup.c b/src/gromacs/mdlib/tgroup.c
index 2b359cec445aaf76354c2d038e705782fafbdf21..ba882e50ca21eb3fa90484eafe3ff3f36d059551 100644 (file)
--- a/src/gromacs/mdlib/tgroup.c
+++ b/src/gromacs/mdlib/tgroup.c
@@ -45,7 +45,7 @@
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/futil.h"
 #include "tgroup.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "network.h"
 #include "update.h"
 #include "rbin.h"

diff --git a/src/gromacs/mdlib/tpi.c b/src/gromacs/mdlib/tpi.c
index 479df9b44d4e9f8cb6297c68051b7bc65e579c9c..0bd1e9fddbc395e780be2d378284ea49d92751b4 100644 (file)
--- a/src/gromacs/mdlib/tpi.c
+++ b/src/gromacs/mdlib/tpi.c
@@ -55,7 +55,7 @@
 #include "typedefs.h"
 #include "update.h"
 #include "constr.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "tgroup.h"
 #include "mdebin.h"
 #include "vsite.h"

diff --git a/src/gromacs/mdlib/update.c b/src/gromacs/mdlib/update.c
index 9039d6d383b20aa68ee40a4a7fd2cca47b23fcbc..dddca371c410142f5bbadc9455a729f0ecd6a2d2 100644 (file)
--- a/src/gromacs/mdlib/update.c
+++ b/src/gromacs/mdlib/update.c
@@ -48,7 +48,7 @@
 #include "nrnb.h"
 #include "physics.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "update.h"
 #include "gromacs/random/random.h"
 #include "mshift.h"

diff --git a/src/gromacs/mdlib/vcm.c b/src/gromacs/mdlib/vcm.c
index 3be1995d4071a9cc1e0677a35076cafb999a908a..5deaefd6e2e9d153417f1def12ef3fc609033866 100644 (file)
--- a/src/gromacs/mdlib/vcm.c
+++ b/src/gromacs/mdlib/vcm.c
@@ -41,7 +41,7 @@
 
 #include "macros.h"
 #include "vcm.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "names.h"
 #include "txtdump.h"

diff --git a/src/gromacs/mdlib/vsite.c b/src/gromacs/mdlib/vsite.c
index c41dacff63842baef82a04599a9bdabfbe54efe7..4ded99bd46f2d031c88deca8e980307ccba0b7fa 100644 (file)
--- a/src/gromacs/mdlib/vsite.c
+++ b/src/gromacs/mdlib/vsite.c
@@ -46,7 +46,7 @@
 #include "macros.h"
 #include "gromacs/utility/smalloc.h"
 #include "nrnb.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "network.h"
 #include "mshift.h"
 #include "pbc.h"

diff --git a/src/gromacs/mdlib/wall.c b/src/gromacs/mdlib/wall.c
index f7e28280cb31a92d28ea3996220fec9d9b2d6572..a2e6667885e29dd3285bcc08d4857333c9a11120 100644 (file)
--- a/src/gromacs/mdlib/wall.c
+++ b/src/gromacs/mdlib/wall.c
@@ -46,7 +46,7 @@
 #include "macros.h"
 #include "force.h"
 #include "nrnb.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 #include "gromacs/fileio/filenm.h"
 #include "gromacs/math/utilities.h"

diff --git a/src/gromacs/pulling/pull.c b/src/gromacs/pulling/pull.c
index 06813294c2bbb86ed2339d36c0498b1009bea4bd..6a0f76f16d474e2246bf5ba607fd1e4d46e3df8b 100644 (file)
--- a/src/gromacs/pulling/pull.c
+++ b/src/gromacs/pulling/pull.c
@@ -38,22 +38,17 @@
 #include <config.h>
 #endif
 
-
 #include <math.h>
 #include <stdio.h>
 #include <stdlib.h>
+#include <string.h>
+
 #include "gromacs/utility/futil.h"
 #include "index.h"
-#include "gromacs/fileio/gmxfio.h"
-#include "vec.h"
 #include "typedefs.h"
 #include "types/commrec.h"
 #include "network.h"
-#include "gromacs/fileio/filenm.h"
-#include <string.h>
-#include "gromacs/utility/smalloc.h"
 #include "pull.h"
-#include "gromacs/fileio/xvgr.h"
 #include "names.h"
 #include "pbc.h"
 #include "mtop_util.h"
@@ -61,7 +56,12 @@
 #include "gmx_ga2la.h"
 #include "copyrite.h"
 #include "macros.h"
-#include "vec.h"
+
+#include "gromacs/fileio/filenm.h"
+#include "gromacs/fileio/gmxfio.h"
+#include "gromacs/fileio/xvgr.h"
+#include "gromacs/math/vec.h"
+#include "gromacs/utility/smalloc.h"
 
 static void pull_print_group_x(FILE *out, ivec dim, const t_pull_group *pgrp)
 {

diff --git a/src/gromacs/pulling/pull_rotation.c b/src/gromacs/pulling/pull_rotation.c
index d0e953ba433b76ad0a89cacaf85ccbd9aa264e8e..4b3c47e9d6f3fb0fc8decf206eedcb1e13658646 100644 (file)
--- a/src/gromacs/pulling/pull_rotation.c
+++ b/src/gromacs/pulling/pull_rotation.c
@@ -51,7 +51,7 @@
 #include "names.h"
 #include "mtop_util.h"
 #include "names.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gmx_ga2la.h"
 #include "gromacs/fileio/xvgr.h"
 #include "copyrite.h"

diff --git a/src/gromacs/pulling/pullutil.c b/src/gromacs/pulling/pullutil.c
index 1a86423a13388e76bb92eea0a6cdec7fcb67023f..483dc00fe509b3a1ed4619c8e84bcdfd5ce28147 100644 (file)
--- a/src/gromacs/pulling/pullutil.c
+++ b/src/gromacs/pulling/pullutil.c
@@ -42,7 +42,7 @@
 
 #include "princ.h"
 #include "gromacs/utility/futil.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "typedefs.h"
 #include "types/commrec.h"

diff --git a/src/gromacs/selection/centerofmass.cpp b/src/gromacs/selection/centerofmass.cpp
index bd14886ca46783840442560f444eb428ddc5e803..2cece1121efbcb284f3b7dcbc5ee1cebeb4689b2 100644 (file)
--- a/src/gromacs/selection/centerofmass.cpp
+++ b/src/gromacs/selection/centerofmass.cpp
@@ -45,7 +45,8 @@
 
 #include "gromacs/legacyheaders/typedefs.h"
 #include "gromacs/legacyheaders/pbc.h"
-#include "gromacs/legacyheaders/vec.h"
+
+#include "gromacs/math/vec.h"
 
 int
 gmx_calc_cog(t_topology * /* top */, rvec x[], int nrefat, atom_id index[], rvec xout)

diff --git a/src/gromacs/selection/compiler.cpp b/src/gromacs/selection/compiler.cpp
index 2cc7655e150458f3219d01c6f28dad56a788dd0d..58beeea69a590294efb948d35cefdd34b61ccc20 100644 (file)
--- a/src/gromacs/selection/compiler.cpp
+++ b/src/gromacs/selection/compiler.cpp
@@ -276,8 +276,7 @@
 #include <math.h>
 #include <stdarg.h>
 
-#include "gromacs/legacyheaders/vec.h"
-
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/indexutil.h"
 #include "gromacs/selection/poscalc.h"
 #include "gromacs/selection/selection.h"

diff --git a/src/gromacs/selection/evaluate.cpp b/src/gromacs/selection/evaluate.cpp
index 0d67bb0c2d622f7bb622c530b916d6c4fcf72140..721acc5d26824d978413ebafc6400af4f8143a69 100644 (file)
--- a/src/gromacs/selection/evaluate.cpp
+++ b/src/gromacs/selection/evaluate.cpp
@@ -52,9 +52,8 @@
  */
 #include <string.h>
 
-#include "gromacs/legacyheaders/vec.h"
-
 #include "gromacs/math/utilities.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/indexutil.h"
 #include "gromacs/selection/poscalc.h"
 #include "gromacs/selection/selection.h"

diff --git a/src/gromacs/selection/nbsearch.cpp b/src/gromacs/selection/nbsearch.cpp
index 06ecbe62a37e417ebd5118ecff94f79711fd84c8..730da2c1a6971053618025fdf71abf6d2b4af76c 100644 (file)
--- a/src/gromacs/selection/nbsearch.cpp
+++ b/src/gromacs/selection/nbsearch.cpp
@@ -66,8 +66,8 @@
 
 #include "gromacs/legacyheaders/typedefs.h"
 #include "gromacs/legacyheaders/pbc.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/position.h"
 #include "gromacs/utility/arrayref.h"
 #include "gromacs/utility/gmxassert.h"

diff --git a/src/gromacs/selection/params.cpp b/src/gromacs/selection/params.cpp
index 28686b059e50a5495ae39271fd832b176240516c..9ea38e53182e97d3d09c33be1bdf22a81bbb731f 100644 (file)
--- a/src/gromacs/selection/params.cpp
+++ b/src/gromacs/selection/params.cpp
@@ -42,8 +42,7 @@
 #include <algorithm>
 #include <string>
 
-#include "gromacs/legacyheaders/vec.h"
-
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/position.h"
 #include "gromacs/selection/selmethod.h"
 #include "gromacs/selection/selparam.h"

diff --git a/src/gromacs/selection/parsetree.h b/src/gromacs/selection/parsetree.h
index 142fe7e1a6f4e23a3caebb03419ead3bae4cf995..efae17be7d276f9aed1e7211dfd10dd34a16fa0d 100644 (file)
--- a/src/gromacs/selection/parsetree.h
+++ b/src/gromacs/selection/parsetree.h
@@ -56,8 +56,8 @@
 #include <string>
 
 #include "gromacs/legacyheaders/types/simple.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/gmxassert.h"
 #include "gromacs/utility/uniqueptr.h"
 

diff --git a/src/gromacs/selection/poscalc.cpp b/src/gromacs/selection/poscalc.cpp
index 1f1757237605121e7c9819415a433fc178f5d83c..110ba5057cfc37409dc2cd747125c2752f77d62a 100644 (file)
--- a/src/gromacs/selection/poscalc.cpp
+++ b/src/gromacs/selection/poscalc.cpp
@@ -63,8 +63,8 @@
 
 #include "gromacs/legacyheaders/typedefs.h"
 #include "gromacs/legacyheaders/pbc.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/centerofmass.h"
 #include "gromacs/selection/indexutil.h"
 #include "gromacs/selection/poscalc.h"

diff --git a/src/gromacs/selection/position.cpp b/src/gromacs/selection/position.cpp
index fe89b9ff6a99c253ee686b372b184fa8bbe2e67f..795a08f3f669c6002e9a562ce98b7fb44d4fba6e 100644 (file)
--- a/src/gromacs/selection/position.cpp
+++ b/src/gromacs/selection/position.cpp
@@ -44,8 +44,8 @@
 #include <string.h>
 
 #include "gromacs/legacyheaders/typedefs.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/indexutil.h"
 #include "gromacs/utility/gmxassert.h"
 #include "gromacs/utility/smalloc.h"

diff --git a/src/gromacs/selection/sm_distance.cpp b/src/gromacs/selection/sm_distance.cpp
index e7a6c689c56ba852c5f7b0d6048aee13b1c1d0c6..cff41bd41e8ddba5106b671a2c5fb4f70a71b020 100644 (file)
--- a/src/gromacs/selection/sm_distance.cpp
+++ b/src/gromacs/selection/sm_distance.cpp
@@ -44,8 +44,8 @@
  */
 #include "gromacs/legacyheaders/macros.h"
 #include "gromacs/legacyheaders/pbc.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/nbsearch.h"
 #include "gromacs/selection/position.h"
 #include "gromacs/selection/selmethod.h"

diff --git a/src/gromacs/selection/sm_insolidangle.cpp b/src/gromacs/selection/sm_insolidangle.cpp
index f9b8e736f739ee9a516a8074eec8043237229cfe..38766c99ebb0d76107b81d1961ed211d8125dddf 100644 (file)
--- a/src/gromacs/selection/sm_insolidangle.cpp
+++ b/src/gromacs/selection/sm_insolidangle.cpp
@@ -119,9 +119,9 @@
 #include "gromacs/legacyheaders/macros.h"
 #include "gromacs/legacyheaders/pbc.h"
 #include "gromacs/legacyheaders/physics.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/math/utilities.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/indexutil.h"
 #include "gromacs/selection/position.h"
 #include "gromacs/selection/selection.h"

diff --git a/src/gromacs/selection/sm_merge.cpp b/src/gromacs/selection/sm_merge.cpp
index 258dc85d1f3cc14e608e8493e80f8ede49744286..f0bc60597ae87c9bbaeec7e080a96068e5c00155 100644 (file)
--- a/src/gromacs/selection/sm_merge.cpp
+++ b/src/gromacs/selection/sm_merge.cpp
@@ -40,8 +40,8 @@
  * \ingroup module_selection
  */
 #include "gromacs/legacyheaders/macros.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/position.h"
 #include "gromacs/selection/selmethod.h"
 #include "gromacs/utility/common.h"

diff --git a/src/gromacs/selection/sm_permute.cpp b/src/gromacs/selection/sm_permute.cpp
index b9a194d0f33720908a6a4d89217dce21f121e58c..94f82b64d587ac59652095ec45a07fb31a4ba901 100644 (file)
--- a/src/gromacs/selection/sm_permute.cpp
+++ b/src/gromacs/selection/sm_permute.cpp
@@ -40,8 +40,8 @@
  * \ingroup module_selection
  */
 #include "gromacs/legacyheaders/macros.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/position.h"
 #include "gromacs/selection/selmethod.h"
 #include "gromacs/utility/exceptions.h"

diff --git a/src/gromacs/selection/tests/nbsearch.cpp b/src/gromacs/selection/tests/nbsearch.cpp
index 0ecf04b6e1af0738ea1d3b092d59a8c752412aff..95c4f1206e60adcf4562c7a83596e4c903e14ac0 100644 (file)
--- a/src/gromacs/selection/tests/nbsearch.cpp
+++ b/src/gromacs/selection/tests/nbsearch.cpp
@@ -53,10 +53,10 @@
 #include <vector>
 
 #include "gromacs/legacyheaders/pbc.h"
-#include "gromacs/legacyheaders/vec.h"
 
-#include "gromacs/selection/nbsearch.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/random/random.h"
+#include "gromacs/selection/nbsearch.h"
 #include "gromacs/utility/smalloc.h"
 
 #include "testutils/testasserts.h"

diff --git a/src/gromacs/selection/tests/poscalc.cpp b/src/gromacs/selection/tests/poscalc.cpp
index ba2b25d52f41f3a40b27e17e10a944cd82cfafbb..a5a8d9faa735289364324f930137eb67d0de7fdd 100644 (file)
--- a/src/gromacs/selection/tests/poscalc.cpp
+++ b/src/gromacs/selection/tests/poscalc.cpp
@@ -44,8 +44,8 @@
 #include <vector>
 
 #include "gromacs/legacyheaders/typedefs.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/selection/indexutil.h"
 #include "gromacs/selection/poscalc.h"
 #include "gromacs/selection/position.h"

diff --git a/src/gromacs/selection/tests/toputils.cpp b/src/gromacs/selection/tests/toputils.cpp
index 1e55142ee2bb5b49d6395e0646cbcc9f4a6b81cc..7d347fee4196ac9019c93c3091ba802cd72ec2c2 100644 (file)
--- a/src/gromacs/selection/tests/toputils.cpp
+++ b/src/gromacs/selection/tests/toputils.cpp
@@ -44,8 +44,8 @@
 #include <cstring>
 
 #include "gromacs/legacyheaders/typedefs.h"
-#include "gromacs/legacyheaders/vec.h"
 
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
 #include "gromacs/utility/gmxassert.h"

diff --git a/src/gromacs/statistics/statistics.c b/src/gromacs/statistics/statistics.c
index 21fadecf2f13e076923e3d68d25f0bdca3c5b7ba..3ebb1f2a37cda36c8d55e425b9a0552cf78de69e 100644 (file)
--- a/src/gromacs/statistics/statistics.c
+++ b/src/gromacs/statistics/statistics.c
@@ -41,7 +41,7 @@
 #include <math.h>
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 
 static int gmx_dnint(double x)
 {

diff --git a/src/gromacs/statistics/statistics_test.c b/src/gromacs/statistics/statistics_test.c
index 6d31816c4cd195691dbed9ccf422a7e63fcfcf11..573d763807ef132e21a1429c5b67a2238b23a35c 100644 (file)
--- a/src/gromacs/statistics/statistics_test.c
+++ b/src/gromacs/statistics/statistics_test.c
@@ -41,7 +41,7 @@
 #include <stdio.h>
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/random/random.h"
 #include "statistics.h"
 

diff --git a/src/gromacs/swap/swapcoords.c b/src/gromacs/swap/swapcoords.c
index ee8847e8308eff14938fb7fe50f1528bf4d11ea1..10825a03460c19ba6a9fa50765ecaa012591fc69 100644 (file)
--- a/src/gromacs/swap/swapcoords.c
+++ b/src/gromacs/swap/swapcoords.c
@@ -53,7 +53,7 @@
 #include "gromacs/mdlib/groupcoord.h"
 #include "mtop_util.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "names.h"
 #include "network.h"
 #include "mdrun.h"

diff --git a/src/gromacs/tools/check.c b/src/gromacs/tools/check.c
index 2458f4086b6b2f65d02f6f03401db14f5a117254..7857d1c7ba4b1876a3a47cc87ebe913a06d9e033 100644 (file)
--- a/src/gromacs/tools/check.c
+++ b/src/gromacs/tools/check.c
@@ -47,7 +47,7 @@
 #include "txtdump.h"
 #include "gromacs/utility/fatalerror.h"
 #include "atomprop.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "pbc.h"
 #include "physics.h"
 #include "index.h"

diff --git a/src/gromacs/tools/convert_tpr.c b/src/gromacs/tools/convert_tpr.c
index c8f2fd95d91083f925fa9bd23509cef6f0483914..552b1d299f8d233414414cdee6eecf1c4cdd95d7 100644 (file)
--- a/src/gromacs/tools/convert_tpr.c
+++ b/src/gromacs/tools/convert_tpr.c
@@ -47,7 +47,7 @@
 #include "typedefs.h"
 #include "gromacs/gmxpreprocess/readir.h"
 #include "gromacs/commandline/pargs.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "mtop_util.h"
 #include "checkpoint.h"
 #include "gromacs/fileio/tpxio.h"

diff --git a/src/gromacs/trajectoryanalysis/analysissettings.cpp b/src/gromacs/trajectoryanalysis/analysissettings.cpp
index 6cfc1d20d7597ea7b3a883045afc3c9b20851036..53f7d7f060f8297fc63ef492398e9736e55307b0 100644 (file)
--- a/src/gromacs/trajectoryanalysis/analysissettings.cpp
+++ b/src/gromacs/trajectoryanalysis/analysissettings.cpp
@@ -41,9 +41,8 @@
  */
 #include "analysissettings.h"
 
-#include "gromacs/legacyheaders/vec.h"
-
 #include "gromacs/fileio/trxio.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/exceptions.h"
 #include "gromacs/utility/smalloc.h"
 

diff --git a/src/gromacs/trajectoryanalysis/modules/angle.cpp b/src/gromacs/trajectoryanalysis/modules/angle.cpp
index 25f8346dad0be3c013056b11b78c0857dfd6fd81..b004d46a5379dc7e2fb2990bddf110d6dc03d8dc 100644 (file)
--- a/src/gromacs/trajectoryanalysis/modules/angle.cpp
+++ b/src/gromacs/trajectoryanalysis/modules/angle.cpp
@@ -46,12 +46,12 @@
 #include <vector>
 
 #include "gromacs/legacyheaders/pbc.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/analysisdata/analysisdata.h"
 #include "gromacs/analysisdata/modules/average.h"
 #include "gromacs/analysisdata/modules/histogram.h"
 #include "gromacs/analysisdata/modules/plot.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/options/basicoptions.h"
 #include "gromacs/options/filenameoption.h"
 #include "gromacs/options/options.h"

diff --git a/src/gromacs/trajectoryanalysis/modules/distance.cpp b/src/gromacs/trajectoryanalysis/modules/distance.cpp
index 13794cb2a9fea01427eb0124cd679e463ccb626e..b117b30ca611b7b271957d3e37629feb1e23b8d2 100644 (file)
--- a/src/gromacs/trajectoryanalysis/modules/distance.cpp
+++ b/src/gromacs/trajectoryanalysis/modules/distance.cpp
@@ -44,12 +44,12 @@
 #include <string>
 
 #include "gromacs/legacyheaders/pbc.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/analysisdata/analysisdata.h"
 #include "gromacs/analysisdata/modules/average.h"
 #include "gromacs/analysisdata/modules/histogram.h"
 #include "gromacs/analysisdata/modules/plot.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/options/basicoptions.h"
 #include "gromacs/options/filenameoption.h"
 #include "gromacs/options/options.h"

diff --git a/src/gromacs/trajectoryanalysis/modules/freevolume.cpp b/src/gromacs/trajectoryanalysis/modules/freevolume.cpp
index 3e24e2fbfc00b7a67f9786994e418222c0edfe7a..bc3e9821023abe4447f0c99f09de87cc62154e24 100644 (file)
--- a/src/gromacs/trajectoryanalysis/modules/freevolume.cpp
+++ b/src/gromacs/trajectoryanalysis/modules/freevolume.cpp
@@ -45,16 +45,16 @@
 
 #include "gromacs/legacyheaders/atomprop.h"
 #include "gromacs/legacyheaders/copyrite.h"
-#include "gromacs/random/random.h"
 #include "gromacs/legacyheaders/pbc.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/analysisdata/analysisdata.h"
 #include "gromacs/analysisdata/modules/average.h"
 #include "gromacs/analysisdata/modules/plot.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/options/basicoptions.h"
 #include "gromacs/options/filenameoption.h"
 #include "gromacs/options/options.h"
+#include "gromacs/random/random.h"
 #include "gromacs/selection/nbsearch.h"
 #include "gromacs/selection/selection.h"
 #include "gromacs/selection/selectionoption.h"

diff --git a/src/gromacs/trajectoryanalysis/modules/nsc.c b/src/gromacs/trajectoryanalysis/modules/nsc.c
index ab27dae4e32c7c477d252bd4f56c224a28dd3290..c895087937b87d0597edd07ee9cb143fc780fe55 100644 (file)
--- a/src/gromacs/trajectoryanalysis/modules/nsc.c
+++ b/src/gromacs/trajectoryanalysis/modules/nsc.c
@@ -46,7 +46,7 @@
 /* Modified DvdS */
 #include "pbc.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/smalloc.h"
 #include "nsc.h"
 

diff --git a/src/gromacs/trajectoryanalysis/modules/sasa.cpp b/src/gromacs/trajectoryanalysis/modules/sasa.cpp
index 023423f99d7edd9a96f55888bb71e82367c13a35..e29d7a951daaf4fcb088c68f4476391ef222fa16 100644 (file)
--- a/src/gromacs/trajectoryanalysis/modules/sasa.cpp
+++ b/src/gromacs/trajectoryanalysis/modules/sasa.cpp
@@ -52,13 +52,13 @@
 #include "gromacs/legacyheaders/pbc.h"
 #include "gromacs/legacyheaders/physics.h"
 #include "gromacs/legacyheaders/symtab.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/analysisdata/analysisdata.h"
 #include "gromacs/analysisdata/modules/average.h"
 #include "gromacs/analysisdata/modules/plot.h"
 #include "gromacs/fileio/confio.h"
 #include "gromacs/fileio/pdbio.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/options/basicoptions.h"
 #include "gromacs/options/filenameoption.h"
 #include "gromacs/options/options.h"

diff --git a/src/gromacs/trajectoryanalysis/runnercommon.cpp b/src/gromacs/trajectoryanalysis/runnercommon.cpp
index b69fe77f497b1676beff499c601919d9977dc5be..64c515b69ea58a6a261b3dbb732e02074cff1195 100644 (file)
--- a/src/gromacs/trajectoryanalysis/runnercommon.cpp
+++ b/src/gromacs/trajectoryanalysis/runnercommon.cpp
@@ -49,11 +49,11 @@
 
 #include "gromacs/legacyheaders/oenv.h"
 #include "gromacs/legacyheaders/rmpbc.h"
-#include "gromacs/legacyheaders/vec.h"
 
 #include "gromacs/fileio/timecontrol.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/options/basicoptions.h"
 #include "gromacs/options/filenameoption.h"
 #include "gromacs/options/options.h"

diff --git a/src/programs/mdrun/md.c b/src/programs/mdrun/md.c
index 56116bad756453436cd269ca4f8bb5e3105cf8b4..453a6ae16794f9a83b71fcd7e15d59a6e996f205 100644 (file)
--- a/src/programs/mdrun/md.c
+++ b/src/programs/mdrun/md.c
@@ -42,7 +42,7 @@
 
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "vcm.h"
 #include "mdebin.h"
 #include "nrnb.h"

diff --git a/src/programs/mdrun/membed.c b/src/programs/mdrun/membed.c
index 3a96c0c78b3741c6a9a715af39de257c675e571b..0ca22c6caf0febc18e0d62849947640af2e8331e 100644 (file)
--- a/src/programs/mdrun/membed.c
+++ b/src/programs/mdrun/membed.c
@@ -41,7 +41,7 @@
 #include "typedefs.h"
 #include "types/commrec.h"
 #include "gromacs/utility/smalloc.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "macros.h"
 #include "gromacs/utility/futil.h"
 #include "gromacs/essentialdynamics/edsam.h"

diff --git a/src/programs/mdrun/pme_loadbal.c b/src/programs/mdrun/pme_loadbal.c
index 25d6fd2563583e669a3c336e11711d592cee6ffb..eafee2fd04728a0c2f15c827190aa526745e6ee1 100644 (file)
--- a/src/programs/mdrun/pme_loadbal.c
+++ b/src/programs/mdrun/pme_loadbal.c
@@ -40,7 +40,7 @@
 #include "network.h"
 #include "calcgrid.h"
 #include "pme.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "domdec.h"
 #include "nbnxn_cuda_data_mgmt.h"
 #include "force.h"

diff --git a/src/programs/mdrun/repl_ex.c b/src/programs/mdrun/repl_ex.c
index b3a1aa14c51c923ba16be7b34291061c2fd5d397..5815207ea6b3dfb598b28aeccde5d66e9ce7e46a 100644 (file)
--- a/src/programs/mdrun/repl_ex.c
+++ b/src/programs/mdrun/repl_ex.c
@@ -46,7 +46,7 @@
 #include "physics.h"
 #include "copyrite.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "names.h"
 #include "domdec.h"
 #include "main.h"

diff --git a/src/programs/mdrun/runner.c b/src/programs/mdrun/runner.c
index ad1b6f2a0745505b37e84714bc94fcc290599ce2..e1a19a4ad713062ff32563d61a666c4e6e4192d2 100644 (file)
--- a/src/programs/mdrun/runner.c
+++ b/src/programs/mdrun/runner.c
@@ -37,16 +37,16 @@
 #ifdef HAVE_CONFIG_H
 #include <config.h>
 #endif
+
+#include <assert.h>
 #include <signal.h>
 #include <stdlib.h>
+#include <string.h>
 #ifdef HAVE_UNISTD_H
 #include <unistd.h>
 #endif
-#include <string.h>
-#include <assert.h>
 
 #include "typedefs.h"
-#include "gromacs/utility/smalloc.h"
 #include "copyrite.h"
 #include "force.h"
 #include "mdrun.h"
@@ -78,15 +78,17 @@
 #include "inputrec.h"
 #include "main.h"
 
+#include "gromacs/essentialdynamics/edsam.h"
 #include "gromacs/fileio/tpxio.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/mdlib/nbnxn_search.h"
 #include "gromacs/mdlib/nbnxn_consts.h"
-#include "gromacs/timing/wallcycle.h"
-#include "gromacs/utility/gmxmpi.h"
-#include "gromacs/swap/swapcoords.h"
-#include "gromacs/essentialdynamics/edsam.h"
 #include "gromacs/pulling/pull.h"
 #include "gromacs/pulling/pull_rotation.h"
+#include "gromacs/swap/swapcoords.h"
+#include "gromacs/timing/wallcycle.h"
+#include "gromacs/utility/gmxmpi.h"
+#include "gromacs/utility/smalloc.h"
 
 #ifdef GMX_FAHCORE
 #include "corewrap.h"

diff --git a/src/programs/view/manager.cpp b/src/programs/view/manager.cpp
index 1e3cdfd2c588a3edff0e1c86aaa4e3353944c4fe..86a466e1a72cd1dd5bab3d830c9077b087a1046e 100644 (file)
--- a/src/programs/view/manager.cpp
+++ b/src/programs/view/manager.cpp
@@ -55,7 +55,7 @@
 #include "pbc.h"
 #include "nmol.h"
 #include "copyrite.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/utility/cstringutil.h"
 
 #include "gromacs/utility/futil.h"

diff --git a/src/programs/view/nmol.cpp b/src/programs/view/nmol.cpp
index d385d27122f4511ac6555c6ee63dc87fbdba070b..cf17bb5608d9a2cf4d4edac1227c0460a19e6a3e 100644 (file)
--- a/src/programs/view/nmol.cpp
+++ b/src/programs/view/nmol.cpp
@@ -47,7 +47,7 @@
 #include "buttons.h"
 #include "manager.h"
 #include "nmol.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "txtdump.h"
 #include "pbc.h"