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Minor performance improments
2014-09-19
Teemu Murtola
Proper dependencies for Doxygen build rules
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2014-09-19
Teemu Murtola
Fix histogram resampling output bin positions
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2014-09-19
Teemu Murtola
Embed module dependency graph in Doxygen docs
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2014-09-19
Teemu Murtola
Add support for cumulative histograms
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2014-09-19
Teemu Murtola
More precise analysisdata histogram accumulation
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2014-09-19
Teemu Murtola
Misc. Doxygen build system improvements
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2014-09-13
Teemu Murtola
Extend support for float/double tolerances in testing
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2014-09-13
Teemu Murtola
Declare __STDC_*_MACROS in gmxpre.h
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2014-09-12
Teemu Murtola
Run include order check in doc-check
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2014-09-11
Teemu Murtola
Improve uncrustify.sh return code handling
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2014-09-11
Teemu Murtola
Include directive sorter
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2014-09-11
Teemu Murtola
Add gmx_getpid()
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2014-09-11
Teemu Murtola
Move _GNU_SOURCE to gmxpre.h
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2014-09-11
Teemu Murtola
Sort includes outside src/gromacs
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2014-09-11
Teemu Murtola
Sort all includes in src/gromacs
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2014-09-11
Teemu Murtola
Use absolute include paths in nbnxn kernels
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2014-09-11
Teemu Murtola
Manually sort some includes in src/gromacs
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2014-09-08
Teemu Murtola
Support custom default extension for FileNameOption
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2014-09-08
Teemu Murtola
Remove unnecessary extensions in t_filenm defaults
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2014-09-07
Teemu Murtola
More consistent default handling for StringOption
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2014-09-07
Teemu Murtola
Update template/README
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2014-09-05
Teemu Murtola
Remove unnecessary config.h includes
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2014-09-05
Teemu Murtola
Move some defines to gmxpre.h for thread-MPI
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2014-09-05
Teemu Murtola
Another batch of added config.h
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2014-09-05
Teemu Murtola
Make doc-check fail the build on warnings
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2014-09-05
Teemu Murtola
Merge "Merge release-5-0 into master"
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2014-09-04
Teemu Murtola
Include config.h directly if used
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2014-09-04
Teemu Murtola
Make doc-check silent for in-source build
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2014-09-04
Teemu Murtola
Merge "Merge release-5-0 into master"
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2014-08-24
Teemu Murtola
Precalculate pbc shift for analysis nbsearch
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2014-08-24
Teemu Murtola
Improve analysis nbsearch grid mapping
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2014-08-23
Teemu Murtola
Backport of 'Remove unused figures from share/html/'
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2014-08-22
Teemu Murtola
Move -nice handling to CommandLineModuleManager
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2014-08-20
Teemu Murtola
Misc. gmxpre.h-related changes
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2014-08-20
Teemu Murtola
Merge release-5-0 into master
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2014-08-20
Teemu Murtola
Remove unused config.h defines
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2014-08-19
Teemu Murtola
Introduce gmxpre.h for truly global definitions
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2014-08-16
Teemu Murtola
Disable analysisdata generic tests if not compilable
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2014-08-14
Teemu Murtola
Fix CMake package config after recent version changes
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2014-08-13
Teemu Murtola
Use native CMake mechanism for find_package(GROMACS)
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2014-08-13
Teemu Murtola
Reorganize CMake version information management
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2014-08-10
Teemu Murtola
Improve initAfterFirstFrame() usability
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2014-08-10
Teemu Murtola
Make vec.h const-correct with both C and C++
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2014-08-10
Teemu Murtola
Basic exclusion support for analysis nbsearch
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2014-08-09
Teemu Murtola
Add Selection::hasOnlyAtoms()
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2014-08-07
Teemu Murtola
Basic support for 2D neighborhood search for analysis
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2014-08-04
Teemu Murtola
Verify MD5 sum for FFTW download
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2014-08-03
Teemu Murtola
Check frame atom count before evaluating selections
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2014-07-31
Teemu Murtola
Merge "Merge release-5-0 into master"
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2014-07-24
Teemu Murtola
Do not actually install uniqueptr.h
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2014-07-16
Teemu Murtola
Fix HTML help and man pages for commands with dashes
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2014-07-12
Teemu Murtola
Make gmx_node_num/rank safer
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2014-07-11
Teemu Murtola
Fix HTML links that contain file extensions
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2014-07-10
Teemu Murtola
Bump SOVERSION
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2014-07-09
Teemu Murtola
Clean up gmx_header_config
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2014-07-09
Teemu Murtola
Merge release-5-0 into master
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2014-07-09
Teemu Murtola
Improve module dependency graph layout
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2014-07-09
Teemu Murtola
Module dependency cycle checker for 'doc-check'
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2014-07-08
Teemu Murtola
Remove PCA_QUIET
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2014-07-08
Teemu Murtola
Additional index group checks for selections
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2014-07-08
Teemu Murtola
Clean up program name handling in oenv
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2014-07-08
Teemu Murtola
Improve FileNameOption error handling
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2014-07-08
Teemu Murtola
Move GMX_CXX11 to config.h
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2014-07-08
Teemu Murtola
Remove gmx_unique_ptr from options public headers
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2014-07-08
Teemu Murtola
Make selections ignore \r in input
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2014-07-08
Teemu Murtola
Remove selection help from SelectionCollection
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2014-07-08
Teemu Murtola
Change some gmx_unique_ptr to shared_ptr in public...
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2014-07-08
Teemu Murtola
Move -debug to cmdlinemodulemanager.cpp
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2014-07-08
Teemu Murtola
Make doc-check pass again without warnings
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2014-07-05
Teemu Murtola
Merge release-5-0 into master
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2014-07-05
Teemu Murtola
Reinstantiate unsorted index group check
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2014-07-05
Teemu Murtola
Update some installation-related docs
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2014-07-01
Teemu Murtola
Adjust include directory order for some corner cases
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2014-06-30
Teemu Murtola
Merge release-5-0 into master
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2014-06-29
Teemu Murtola
Remove some hardcoded selection string buffers
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2014-06-28
Teemu Murtola
Remove overeager selection index group check
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2014-06-21
Teemu Murtola
Convert checkpoint.c to C++ compilation
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2014-06-15
Teemu Murtola
Convert gmx_residuetype_t to a non-pointer
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2014-06-15
Teemu Murtola
Remove unused figures from share/html/
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2014-06-07
Teemu Murtola
Clean up FileNameOptionStorage implementation
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2014-06-07
Teemu Murtola
Improve (Selection|FileName)OptionManager handling
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2014-06-07
Teemu Murtola
Replace all command line parsing with Options
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2014-06-07
Teemu Murtola
Move residuetype handling to its own file.
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2014-06-07
Teemu Murtola
Remove support for "old" index file format
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2014-06-07
Teemu Murtola
Move index.* to topology/
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2014-06-02
Teemu Murtola
Move atomprop.* to topology/
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2014-05-31
Teemu Murtola
Move mtop_util.* and topsort.* to topology/
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2014-05-29
Teemu Murtola
Remove more uses of typedefs.h
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2014-05-25
Teemu Murtola
Move general functions out of typedefs.h
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2014-05-25
Teemu Murtola
Remove some typedefs.h dependencies
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2014-05-25
Teemu Murtola
Move types/topology.h to topology/
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2014-05-24
Teemu Murtola
Move types/idef.h to topology/
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2014-05-24
Teemu Murtola
Move types/atoms.h to topology/
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2014-05-24
Teemu Murtola
Move types/ishift.h to pbcutil/
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2014-05-24
Teemu Murtola
Move invblock.* to topology/
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2014-05-24
Teemu Murtola
Move types/block.h to topology/
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2014-05-24
Teemu Murtola
Move symtab.* to topology/
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2014-05-24
Teemu Murtola
Merge t_symtab into symtab.h
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2014-05-24
Teemu Murtola
Move pbc.* to pbcutil/
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2014-05-22
Teemu Murtola
Move cinvsqrtdata.c to math/ and remove Fortran remnants
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