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Improve initAfterFirstFrame() usability
2014-08-10
Teemu Murtola
Improve initAfterFirstFrame() usability
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2014-08-10
Teemu Murtola
Make vec.h const-correct with both C and C++
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2014-08-10
Teemu Murtola
Basic exclusion support for analysis nbsearch
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2014-08-09
Teemu Murtola
Add Selection::hasOnlyAtoms()
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2014-08-07
Teemu Murtola
Basic support for 2D neighborhood search for analysis
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2014-08-03
Teemu Murtola
Check frame atom count before evaluating selections
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2014-07-31
Teemu Murtola
Merge "Merge release-5-0 into master"
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2014-07-24
Teemu Murtola
Do not actually install uniqueptr.h
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2014-07-16
Teemu Murtola
Fix HTML help and man pages for commands with dashes
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2014-07-12
Teemu Murtola
Make gmx_node_num/rank safer
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2014-07-11
Teemu Murtola
Fix HTML links that contain file extensions
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2014-07-10
Teemu Murtola
Bump SOVERSION
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2014-07-09
Teemu Murtola
Clean up gmx_header_config
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2014-07-09
Teemu Murtola
Merge release-5-0 into master
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2014-07-09
Teemu Murtola
Improve module dependency graph layout
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2014-07-09
Teemu Murtola
Module dependency cycle checker for 'doc-check'
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2014-07-08
Teemu Murtola
Remove PCA_QUIET
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2014-07-08
Teemu Murtola
Additional index group checks for selections
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2014-07-08
Teemu Murtola
Clean up program name handling in oenv
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2014-07-08
Teemu Murtola
Improve FileNameOption error handling
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2014-07-08
Teemu Murtola
Move GMX_CXX11 to config.h
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2014-07-08
Teemu Murtola
Remove gmx_unique_ptr from options public headers
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2014-07-08
Teemu Murtola
Make selections ignore \r in input
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2014-07-08
Teemu Murtola
Remove selection help from SelectionCollection
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2014-07-08
Teemu Murtola
Change some gmx_unique_ptr to shared_ptr in public...
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2014-07-08
Teemu Murtola
Move -debug to cmdlinemodulemanager.cpp
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2014-07-08
Teemu Murtola
Make doc-check pass again without warnings
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2014-07-05
Teemu Murtola
Merge release-5-0 into master
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2014-07-05
Teemu Murtola
Reinstantiate unsorted index group check
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2014-07-05
Teemu Murtola
Update some installation-related docs
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2014-07-01
Teemu Murtola
Adjust include directory order for some corner cases
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2014-06-30
Teemu Murtola
Merge release-5-0 into master
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2014-06-29
Teemu Murtola
Remove some hardcoded selection string buffers
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2014-06-28
Teemu Murtola
Remove overeager selection index group check
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2014-06-21
Teemu Murtola
Convert checkpoint.c to C++ compilation
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2014-06-15
Teemu Murtola
Convert gmx_residuetype_t to a non-pointer
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2014-06-15
Teemu Murtola
Remove unused figures from share/html/
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2014-06-07
Teemu Murtola
Clean up FileNameOptionStorage implementation
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2014-06-07
Teemu Murtola
Improve (Selection|FileName)OptionManager handling
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2014-06-07
Teemu Murtola
Replace all command line parsing with Options
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2014-06-07
Teemu Murtola
Move residuetype handling to its own file.
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2014-06-07
Teemu Murtola
Remove support for "old" index file format
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2014-06-07
Teemu Murtola
Move index.* to topology/
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2014-06-02
Teemu Murtola
Move atomprop.* to topology/
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2014-05-31
Teemu Murtola
Move mtop_util.* and topsort.* to topology/
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2014-05-29
Teemu Murtola
Remove more uses of typedefs.h
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2014-05-25
Teemu Murtola
Move general functions out of typedefs.h
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2014-05-25
Teemu Murtola
Remove some typedefs.h dependencies
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2014-05-25
Teemu Murtola
Move types/topology.h to topology/
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2014-05-24
Teemu Murtola
Move types/idef.h to topology/
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2014-05-24
Teemu Murtola
Move types/atoms.h to topology/
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2014-05-24
Teemu Murtola
Move types/ishift.h to pbcutil/
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2014-05-24
Teemu Murtola
Move invblock.* to topology/
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2014-05-24
Teemu Murtola
Move types/block.h to topology/
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2014-05-24
Teemu Murtola
Move symtab.* to topology/
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2014-05-24
Teemu Murtola
Merge t_symtab into symtab.h
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2014-05-24
Teemu Murtola
Move pbc.* to pbcutil/
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2014-05-22
Teemu Murtola
Move cinvsqrtdata.c to math/ and remove Fortran remnants
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2014-05-22
Teemu Murtola
Fix static group list indices in selection prompt
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2014-05-22
Teemu Murtola
Merge t_pbc definition into pbc.h
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2014-05-21
Teemu Murtola
Move mshift.* to pbcutil/
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2014-05-21
Teemu Murtola
Merge t_graph definition into mshift.h
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2014-05-20
Teemu Murtola
Move rmpbc.* to pbcutil/
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2014-05-18
Teemu Murtola
Clean up matio.*
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2014-05-18
Teemu Murtola
Move 3dview.* to programs/view/
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2014-05-18
Teemu Murtola
Clean up math/
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2014-05-17
Teemu Murtola
More elaborate default handling for FileNameOption
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2014-05-17
Teemu Murtola
Unit tests for parse_common_args() file options
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2014-05-14
Teemu Murtola
Move physics.* to math/units.*
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2014-05-01
Teemu Murtola
Fix incorrect limits in FloatOptionStorage
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2014-04-28
Teemu Murtola
Move mtxio.* to fileio/
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2014-04-27
Teemu Murtola
Move rvec and friends to math/vectypes.h
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2014-04-27
Teemu Murtola
Move 'real' definition to utility/real.h
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2014-04-17
Teemu Murtola
Move vec.h to math/
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2014-04-16
Teemu Murtola
Remove unused minvert.h
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2014-04-16
Teemu Murtola
Fix typo in fatalerror.h
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2014-04-16
Teemu Murtola
Move xvgr.* to fileio/
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2014-04-16
Teemu Murtola
Clean up xvgr.h and viewit.h usage
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2014-04-16
Teemu Murtola
Remove sysstuff.h
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2014-04-16
Teemu Murtola
Remove sysstuff.h includes from headers
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2014-04-16
Teemu Murtola
Refactor gmx_fatal()
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2014-04-13
Teemu Murtola
Remove unused shift.h
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2014-04-13
Teemu Murtola
Remove utility -> fileio dependencies
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2014-04-13
Teemu Murtola
Clean up futil.*
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2014-04-10
Teemu Murtola
Clean up and fix issues in doc-check scripts
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2014-04-10
Teemu Murtola
Move part of types/simple.h to utility/
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2014-04-10
Teemu Murtola
Remove utility/ dependencies on network.h and main.h
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2014-04-08
Teemu Murtola
Remove some utility -> legacyheaders dependencies
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2014-04-08
Teemu Murtola
Version bump for post-5.0 development
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2014-04-08
Teemu Murtola
Move gmx_fatal.* to utility/fatalerror.*
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2014-04-07
Teemu Murtola
Doxygen documentation for version.h
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2014-04-04
Teemu Murtola
Remove ancient SGI-specific code
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2014-04-04
Teemu Murtola
Clean up gmx_fatal.*
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2014-04-02
Teemu Murtola
Move string2.* to utility/cstringutil.*
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2014-04-01
Teemu Murtola
Move smalloc.h to utility/
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2014-03-31
Teemu Murtola
Remove #include <...> for local files in gmx-view
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2014-03-31
Teemu Murtola
Clean up smalloc.h
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2014-03-31
Teemu Murtola
Move some math headers away from legacyheaders/
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2014-03-31
Teemu Murtola
Remove dependency on commandline/ from oenv.cpp
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2014-03-30
Teemu Murtola
Clean up string2.h-related includes
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