Updates for updated Python version requirement.
[alexxy/gromacs.git] / src /
2021-08-16 Berk Hessgrompp no longer modifies nstcomm
2021-08-15 Artem ZhmurovDo not allow AtomLocality::All for coordinates and...
2021-08-13 Dmitry MorozovFix MSVC error in toppush.cpp
2021-08-13 Mark AbrahamProvide better defaults for GMX_GPU_NB_CLUSTER_SIZE...
2021-08-13 Andrey AlekseenkoRemove duplicate waiting for coordinates
2021-08-12 Dmitry MorozovAdded class for generating standard CP2K input
2021-08-11 Andrey AlekseenkoFix few issues with open-source Intel LLVM (Clang 13)
2021-08-10 Mark AbrahamImprove testutils infrastructure
2021-08-09 Artem ZhmurovAdd SYCL SETTLE kernel
2021-08-09 Andrey AlekseenkoOnly enable GPU FFT test for build supporting it
2021-08-07 Mark AbrahamAvoid expensive atom-type lookups in grompp
2021-08-05 Mark AbrahamLift atom type lookup out of inner loops
2021-08-03 Mark AbrahamAdd GPU 3D FFT tests
2021-08-03 Mark AbrahamUpdate bundled GoogleTest to current HEAD
2021-08-03 Andrey AlekseenkoRemove StatePropagatorDataGpu::getVelocitiesReadyOnDevi...
2021-08-02 Mark AbrahamFix style violations
2021-08-01 Alan GrayRemove MPI comm from GPU PME-PP force transfer initiation
2021-07-30 Szilárd PállOnly define GMX_SYCL_DPCPP macro in SYLC builds
2021-07-30 Mark AbrahamSimplify short-circuit logic in grompp
2021-07-28 Mark AbrahamOptimize grompp VDW parameter-generation allocations
2021-07-26 Andrey AlekseenkoRemove duplicate waiting for coordinates
2021-07-09 Andrey AlekseenkoFix Doxygen issues introduced in 997d9e02 (MR !1783)
2021-07-07 Pascal MerzFix modular simulator MTTK
2021-07-02 Andrey AlekseenkoAvoid passing a temporary object to emplace_back
2021-06-30 Pascal MerzUse MDP database for simulator equivalence tests
2021-06-30 Mark AbrahamTest with newer compilers in CI
2021-06-30 Berk HessPort basic pull test to gtest framework
2021-06-30 Andrey AlekseenkoFix GCC warning
2021-06-29 Mark AbrahamMove GPU 3D FFT code to fft module
2021-06-29 Paul BauerMerge branch release-2021 into master
2021-06-29 Andrey AlekseenkoRevert "Enable back floating-point exceptions for SYCL...
2021-06-29 Dmitry MorozovFix leak in copy_t_atoms
2021-06-26 Mark AbrahamDecouple PME GPU 3DFFT from PME GPU module
2021-06-25 Paul BauerFix wallcycle counting
2021-06-24 Andrey AlekseenkoSYCL NBNXM: Use hand-crafted energy reduction
2021-06-23 Andrey AlekseenkoEnable back floating-point exceptions for SYCL build
2021-06-21 Eliane BriandReworked convert-tpr runtime extension
2021-06-21 Mark AbrahamContinue fixing warnings with clang as host compiler
2021-06-18 Berk HessSpeed up grompp LJ parameter generation
2021-06-18 Andrey AlekseenkoUpdate device detection code for hipSYCL
2021-06-18 Pascal MerzIntroduce ReferenceTemperatureManager
2021-06-17 Mark AbrahamFix warnings when clang is the CUDA host compiler
2021-06-17 Andrey AlekseenkoFix clang-format in src/gromacs/fft/fft_mkl.cpp
2021-06-17 Andrey AlekseenkoSYCL: Reduce the number of atomic ops in NBNXM fShift...
2021-06-17 Andrey AlekseenkoImprove hipSYCL GpuEventSynchronizer implementation
2021-06-17 Mark AbrahamRework -Weverything
2021-06-16 Mark AbrahamUse doxygen properly
2021-06-16 Paul BauerRemove workaround for old clang
2021-06-16 M. Eric IrrgangImprove robustness of StopSignalClient test.
2021-06-16 Pascal MerzPrepare free energy element for external FEP state...
2021-06-16 Joe JordanUse unique_ptr<ListedForcesGpu> in forcerec
2021-06-16 Mark AbrahamFix reporting of quadrupole moment
2021-06-15 Mark AbrahamUpdate interface of gmx_stats_t
2021-06-15 Mark AbrahamRemove some NOLINT now that clang-tidy-11 is required
2021-06-11 Andrey AlekseenkoSYCL: Shorten mangled kernel name types
2021-06-10 Paul BauerUpdate parts of the CPU CMAP kernel
2021-06-10 Pascal MerzRefactor temperature annealing
2021-06-10 Pascal MerzAllow elements to schedule pre-step and post-step functions
2021-06-09 Andrey AlekseenkoRemove some unused-but-set variables
2021-06-09 Andrey AlekseenkoBump hipSYCL version in the CI container
2021-06-09 Artem ZhmurovUse [..] instead of at(..) in LINCS GPU data management...
2021-06-09 Artem ZhmurovCompute reference indices in GPU LINCS upon data prepar...
2021-06-09 Joe JordanExpose and test getVdwKernelType
2021-06-09 Paul BauerAdd .clang-tidy file for nbnxn tests
2021-06-09 Pascal MerzPrepare simulated annealing refactoring
2021-06-08 Joe JordanCoulombKernelType enum, lookup function, and tests
2021-06-08 Pascal MerzUnify FEP period setting
2021-06-08 Szilárd PállWork around hipSYCL buffer reinterpret error
2021-06-08 Andrey AlekseenkoFix clang-tidy complaints
2021-06-08 Mark AbrahamUnite the post-DD-partition update of the local topology
2021-06-07 Mark AbrahamAdd hasPerturbedChargeIn14Interaction to atomInfo bits
2021-06-07 Pascal MerzIntroduce Trotter decomposition / MTTK for modular...
2021-06-07 Paul BauerUse enum class for checkpoint version
2021-06-07 Mark AbrahamMake LocalTopologyChecker class and hide implementation...
2021-06-07 Mark AbrahamAdd unit tests for topology sorting
2021-06-07 Artem ZhmurovRemove duplicating pointers to device buffers in GPU...
2021-06-07 Alan GrayPush GPU PME-PP force from PME task instead of pull...
2021-06-07 Andrey AlekseenkoAdd SYCL-related information to the mdrun version header
2021-06-07 Dmitry MorozovAdded EnergyOutputRequestChecker notification for MDModules
2021-06-04 Pascal MerzAWH data structures modular checkpointing
2021-06-04 Pascal MerzPull and AWH exact continuation tests
2021-06-04 Mark AbrahamConvert atomInfo to int64_t
2021-06-04 Szilárd PállMove useMts flag from forcerec to simulationWorkload
2021-06-03 Artem ZhmurovMake constraints and SETTLE tests backend-agnostic
2021-06-03 Mark AbrahamRemove useless charge-group work during repartitioning
2021-06-03 Mark AbrahamRemove preprocessor usage for atomInfo
2021-06-03 Dmitry MorozovAdded QM input file name as command-line parameter...
2021-06-03 Szilárd PállFix getLocalAtomCount()
2021-06-03 Berk HessMinor pull code cleanup
2021-06-03 Szilárd PállAdd domainWorkload flags for CPU local force contributions
2021-06-03 Pascal MerzFree energy history modular checkpointing
2021-06-03 Szilárd PállAdd a getter function for the local atom count
2021-06-03 Pascal MerzRemove unneeded template keyword which trips up MSVC
2021-06-02 Andrey AlekseenkoSYCL: Update env. vars to select GPUs
2021-06-02 Dmitry MorozovAdd notifications for MDModules that will be used in...
2021-06-01 Paul BauerFix gmx nmr -viol option
2021-06-01 Andrey AlekseenkoMark a variable as unused in non-MPI build
2021-06-01 Eliane BriandFix gmx nmr -viol option
2021-05-31 Mark AbrahamFinish breaking up domdec_topology.cpp
2021-05-31 ejjordanIncrease const correctness in gmx_pme_send_parameters
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