Name streams after locality
[alexxy/gromacs.git] / src /
2021-02-09 Artem ZhmurovName streams after locality
2021-02-09 Andrey AlekseenkoFix clang-tidy-11 errors in NBNXM module, part 2
2021-02-09 Pascal MerzMake temperature and pressure coupling enums enum classes
2021-02-09 Mark AbrahamRemove tree-reduce algorithm
2021-02-09 Andrey AlekseenkodispatchTemplatedFunction: dispatch by bool
2021-02-08 Andrey AlekseenkoDisable FPE for SYCL builds
2021-02-08 Paul BauerFix clang-tidy-11 for trajectoryanalysis
2021-02-08 Paul BauerRemoved "math.h" included from clang-tidy
2021-02-08 Artem ZhmurovParametrize constraints test over the test systems
2021-02-07 Szilárd PállFix clang-tidy 11 warning in nbnxm ocl kernels
2021-02-07 Andrey AlekseenkoReplace custom implementations of GCD with std::gcd
2021-02-05 Paul BauerClean up domdec again after clang-tidy-11 fixes
2021-02-05 Paul BauerClang-tidy-11 fixes for utility
2021-02-05 Paul BauerFix clang-tidy-11 for domdec and utility
2021-02-05 Mark AbrahamRemove VMX SIMD
2021-02-04 Mark AbrahamRemove support for ARMv7 and NEON
2021-02-04 Paul BauerRemove no longer needed macro define
2021-02-04 Artem ZhmurovMake LJ combination rule enum into an enum class
2021-02-04 Mark AbrahamEnsure no UB in writing forces
2021-02-03 Mark AbrahamFix test of not_null
2021-02-03 Paul BauerFix issues found by static analyzer
2021-02-03 Mark AbrahamRemove support for Intel classic compiler
2021-02-02 Andrey AlekseenkoRemove deprecated env. vars GMX_OCL_NB_ANA_EWALD etc
2021-02-02 Artem ZhmurovUse make_unique instead of reset when private implement...
2021-02-02 Mark AbrahamRemove support for Fujitsu Sparc64 HPC-ACE
2021-02-01 Mark AbrahamRemove x86 MIC support
2021-02-01 Mark AbrahamReplace gmx::Mutex with std::mutex
2021-02-01 Paul BauerFix clang-tidy
2021-01-31 Mark AbrahamRequire MPI 2.0
2021-01-29 Artem ZhmurovRmove dependency on Constraints object from compute_glo...
2021-01-29 Hubert SantuzAllow MdModules to access the topology during simulatio...
2021-01-29 Mark AbrahamRemove PrivateImplPointer in favour of std::unique_ptr
2021-01-29 Dmitry MorozovAdded functionality that allows MdModules to disable...
2021-01-29 Mark AbrahamMerge branch release-2021
2021-01-28 Alan GrayMove initiation of local CPU force H2D transfer to...
2021-01-28 Paul BauerFix formatting in random/seed.cpp
2021-01-27 Pascal MerzRemove constant acceleration groups
2021-01-27 Andrey AlekseenkoSYCL: fix typo in a test and clean-up non-standard...
2021-01-26 Szilárd PállChange default Ewald kernel to tabulated on NVIDIA...
2021-01-26 Mark AbrahamFix default for xpm2gmx tick-mark spacings
2021-01-26 Pascal MerzEnable grompp to read virtual_site1
2021-01-25 Mark AbrahamLog progress from gmx msd better
2021-01-22 Szilárd PállDisable CUDA textures also on NVIDIA Ampere A100
2021-01-21 Mark AbrahamEnsure residue name used by pdb2gmx matches rtp name
2021-01-21 Andrey AlekseenkoKeep the number of tMPI ranks consistent with the numbe...
2021-01-21 Szilárd PállMinor naming fix in OpenCL nbnxm kernels
2021-01-21 Mark AbrahamSuggest a workaround for pulling with -deffnm
2021-01-20 Mark AbrahamDescribe the configured precision correctly for mdrun
2021-01-20 Paul BauerFix TPR handling for older versions.
2021-01-20 Mark AbrahamFix PaddedVector move constructor
2021-01-19 Berk HessChange default MTS force group selection
2021-01-19 Szilárd PállDisable CUDA textures on NVIDIA Volta
2021-01-19 Pascal MerzFix modular simulator log writing in fresh simulation...
2021-01-19 Szilárd PállAdd G. Gouaillardet to the list of contributors
2021-01-12 Pascal MerzMake inputrec const at simulator level (leaves some...
2021-01-12 Berk HessAvoid NMR restraints calls for MTS levels > 0
2021-01-11 Mark AbrahamRemove mdrun-only build configuration
2021-01-11 Pascal MerzFix copyright year
2021-01-09 Andrey Alekseenkodensityfit: Fix typo in use of iterators
2021-01-08 Pascal MerzMake inputrec const everywhere in modular simulator
2021-01-08 Gilles GouaillardetARM_SVE: misc fixes
2021-01-07 Pascal MerzFix periodic actions test
2021-01-07 Gilles Gouaillardetarm_sve: fix GMX_SIMD_HAVE_4NSIMD_UTIL_{FLOAT,DOUBLE...
2021-01-07 Paul BauerMerge branch release-2020 into merge-2020-into-2021
2021-01-07 Paul BauerWrite copyright output files as utf8
2021-01-07 Pascal MerzAdd trivial const qualifiers for inputrec
2021-01-07 Pascal MerzSimplify test mdp handling
2021-01-07 Pascal MerzReduce code duplication between Berendsen and c-rescale...
2021-01-07 Pascal MerzRespect user input for nstcomm
2021-01-06 Pascal MerzRemove misleading const qualifier for inputrec in expan...
2021-01-06 Pascal MerzFix lambda printing const qualifier
2021-01-05 Kevin BoydFix broken random seed generation.
2021-01-05 Kevin BoydFix broken random seed generation.
2021-01-05 Christian BlauFix copyright year
2021-01-01 Michael ShirtsExpanded ensemble changes.
2020-12-18 Alan GrayStage bonded kernel atomics through shared memory
2020-12-18 Mark AbrahamMerge branch release-2021
2020-12-17 Mark AbrahamUpdate CI image to OneAPI 2021.1.1, add ICC tests.
2020-12-16 M. Eric IrrgangApply re-formatting to C++ in src/ tree.
2020-12-15 Mark AbrahamUpdate deprecation statuses
2020-12-14 Paul BauerFix pull group index handling
2020-12-14 Magnus LundborgFix incorrect AWH free-energy output with multiple...
2020-12-11 Pascal MerzRestrict force frame comparison for FEP tests
2020-12-11 Pascal MerzFix trx frame reading from modular simulator checkpoint...
2020-12-10 Berk HessA check for perturbed listed pairs beyond rlist
2020-12-10 Magnus LundborgImproved variable names in FEP nonbonded kernel
2020-12-09 Paul BauerFix indexing bug in electric field module
2020-12-09 Andrey AlekseenkoFix defining of EXCLUSION_FORCES in CUDA/OpenCL kernels
2020-12-09 Mark AbrahamFix compilation and tests with icc 19.1.2
2020-12-09 Pascal MerzFix and activate tests for kv-tree checkpoint functions
2020-12-09 Pascal MerzFix dump of checkpoint files
2020-12-07 Pascal MerzFix Nose-Hoover conserved energy
2020-12-05 Pascal MerzClarify checkpoint mismatch error, and enable in release
2020-12-04 Magnus LundborgAdded scalar functions cbrt as well as masked Rcp
2020-12-04 Mark AbrahamFix mdrun-only build
2020-12-04 Pascal MerzRelax simulator comparison tests
2020-12-03 M. Eric IrrgangImprove gmxapi C++ test coverage for failed mdrun.
2020-12-02 Pascal MerzPrint energy conservation in modular simulator
2020-12-02 M. Eric IrrgangOne argument per line for long function signatures.
2020-12-02 Pascal MerzFixes post submit broken by 05f02ab82
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