BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Mark Abraham <mark.j.abraham@gmail.com>
	Fri, 29 Jan 2021 12:11:02 +0000 (13:11 +0100)
committer	Mark Abraham <mark.j.abraham@gmail.com>
	Fri, 29 Jan 2021 13:22:23 +0000 (14:22 +0100)
commit	8bfd8dcf84d26587db444f6b00e797a6073c1d3c
tree	7434265b24a585cbf64611fc39c4816b0efa1f8c	tree \| snapshot
parent	d48c7e71e58875d79926b6ef5a13f1f89dd2ec50	commit \| diff

Remove PrivateImplPointer in favour of std::unique_ptr

The single remaining advantage (help with const correctness in an
unlikely corner case) is outweighed by the disadvantages of
using a custom solution where a generic one would do.

Fixes #3684

126 files changed:

src/api/cpp/tests/restraint.cpp		diff \| blob \| history
src/gromacs/analysisdata/abstractdata.h		diff \| blob \| history
src/gromacs/analysisdata/analysisdata.h		diff \| blob \| history
src/gromacs/analysisdata/datamodulemanager.h		diff \| blob \| history
src/gromacs/analysisdata/datastorage.cpp		diff \| blob \| history
src/gromacs/analysisdata/datastorage.h		diff \| blob \| history
src/gromacs/analysisdata/modules/average.h		diff \| blob \| history
src/gromacs/analysisdata/modules/displacement.h		diff \| blob \| history
src/gromacs/analysisdata/modules/histogram.h		diff \| blob \| history
src/gromacs/analysisdata/modules/lifetime.h		diff \| blob \| history
src/gromacs/analysisdata/modules/plot.h		diff \| blob \| history
src/gromacs/analysisdata/tests/mock_datamodule.h		diff \| blob \| history
src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.h		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpcontext.h		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpmodule.cpp		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpmodule.h		diff \| blob \| history
src/gromacs/commandline/cmdlinehelpwriter.h		diff \| blob \| history
src/gromacs/commandline/cmdlinemodule.h		diff \| blob \| history
src/gromacs/commandline/cmdlinemodulemanager.h		diff \| blob \| history
src/gromacs/commandline/cmdlineparser.h		diff \| blob \| history
src/gromacs/commandline/cmdlineprogramcontext.h		diff \| blob \| history
src/gromacs/commandline/shellcompletions.h		diff \| blob \| history
src/gromacs/commandline/tests/cmdlinemodulemanagertest.h		diff \| blob \| history
src/gromacs/coordinateio/outputadaptercontainer.h		diff \| blob \| history
src/gromacs/correlationfunctions/tests/correlationdataset.h		diff \| blob \| history
src/gromacs/domdec/builder.h		diff \| blob \| history
src/gromacs/domdec/gpuhaloexchange.h		diff \| blob \| history
src/gromacs/domdec/localatomsetmanager.h		diff \| blob \| history
src/gromacs/essentialdynamics/edsam.h		diff \| blob \| history
src/gromacs/ewald/pme_coordinate_receiver_gpu.h		diff \| blob \| history
src/gromacs/ewald/pme_force_sender_gpu.h		diff \| blob \| history
src/gromacs/ewald/pme_gpu_program_impl.h		diff \| blob \| history
src/gromacs/ewald/pme_pp_comm_gpu.h		diff \| blob \| history
src/gromacs/fileio/mrcdensitymap.h		diff \| blob \| history
src/gromacs/gmxpreprocess/gpp_atomtype.h		diff \| blob \| history
src/gromacs/gmxpreprocess/gpp_bond_atomtype.h		diff \| blob \| history
src/gromacs/gpu_utils/device_context.h		diff \| blob \| history
src/gromacs/gpu_utils/device_stream.h		diff \| blob \| history
src/gromacs/gpu_utils/device_stream_manager.h		diff \| blob \| history
src/gromacs/imd/imd.h		diff \| blob \| history
src/gromacs/listed_forces/gpubonded.h		diff \| blob \| history
src/gromacs/math/coordinatetransformation.h		diff \| blob \| history
src/gromacs/math/densityfit.h		diff \| blob \| history
src/gromacs/math/densityfittingforce.h		diff \| blob \| history
src/gromacs/math/gausstransform.h		diff \| blob \| history
src/gromacs/mdlib/constr.h		diff \| blob \| history
src/gromacs/mdlib/gpuforcereduction.h		diff \| blob \| history
src/gromacs/mdlib/leapfrog_gpu.h		diff \| blob \| history
src/gromacs/mdlib/lincs_gpu.cuh		diff \| blob \| history
src/gromacs/mdlib/update.h		diff \| blob \| history
src/gromacs/mdlib/update_constrain_gpu.h		diff \| blob \| history
src/gromacs/mdlib/vsite.h		diff \| blob \| history
src/gromacs/mdrun/mdmodules.h		diff \| blob \| history
src/gromacs/mdtypes/forcebuffers.h		diff \| blob \| history
src/gromacs/mdtypes/iforceprovider.h		diff \| blob \| history
src/gromacs/mdtypes/state_propagator_data_gpu.h		diff \| blob \| history
src/gromacs/mdtypes/state_propagator_data_gpu_impl.h		diff \| blob \| history
src/gromacs/onlinehelp/helpformat.h		diff \| blob \| history
src/gromacs/onlinehelp/helpmanager.h		diff \| blob \| history
src/gromacs/onlinehelp/helptopic.h		diff \| blob \| history
src/gromacs/onlinehelp/helpwritercontext.cpp		diff \| blob \| history
src/gromacs/onlinehelp/helpwritercontext.h		diff \| blob \| history
src/gromacs/onlinehelp/rstparser.h		diff \| blob \| history
src/gromacs/options/abstractoption.h		diff \| blob \| history
src/gromacs/options/abstractoptionstorage.h		diff \| blob \| history
src/gromacs/options/abstractsection.h		diff \| blob \| history
src/gromacs/options/filenameoptionmanager.h		diff \| blob \| history
src/gromacs/options/optionmanagercontainer.h		diff \| blob \| history
src/gromacs/options/options.h		diff \| blob \| history
src/gromacs/options/options_impl.h		diff \| blob \| history
src/gromacs/options/optionsassigner.h		diff \| blob \| history
src/gromacs/options/optionsection.h		diff \| blob \| history
src/gromacs/options/optionsvisitor.h		diff \| blob \| history
src/gromacs/options/timeunitmanager.h		diff \| blob \| history
src/gromacs/pbcutil/com.h		diff \| blob \| history
src/gromacs/pulling/pull_rotation.h		diff \| blob \| history
src/gromacs/random/exponentialdistribution.h		diff \| blob \| history
src/gromacs/random/gammadistribution.h		diff \| blob \| history
src/gromacs/random/normaldistribution.h		diff \| blob \| history
src/gromacs/random/tabulatednormaldistribution.h		diff \| blob \| history
src/gromacs/random/threefry.h		diff \| blob \| history
src/gromacs/random/uniformintdistribution.h		diff \| blob \| history
src/gromacs/random/uniformrealdistribution.h		diff \| blob \| history
src/gromacs/selection/nbsearch.cpp		diff \| blob \| history
src/gromacs/selection/nbsearch.h		diff \| blob \| history
src/gromacs/selection/poscalc.h		diff \| blob \| history
src/gromacs/selection/selection.h		diff \| blob \| history
src/gromacs/selection/selectioncollection.h		diff \| blob \| history
src/gromacs/selection/selectionoptionbehavior.h		diff \| blob \| history
src/gromacs/selection/selectionoptionmanager.h		diff \| blob \| history
src/gromacs/selection/selhelp.cpp		diff \| blob \| history
src/gromacs/selection/symrec.h		diff \| blob \| history
src/gromacs/simd/simd.h		diff \| blob \| history
src/gromacs/tables/cubicsplinetable.h		diff \| blob \| history
src/gromacs/tables/quadraticsplinetable.h		diff \| blob \| history
src/gromacs/topology/atomprop.h		diff \| blob \| history
src/gromacs/topology/atomsbuilder.h		diff \| blob \| history
src/gromacs/topology/residuetypes.h		diff \| blob \| history
src/gromacs/trajectoryanalysis/analysismodule.h		diff \| blob \| history
src/gromacs/trajectoryanalysis/analysissettings.h		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/angle.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/surfacearea.h		diff \| blob \| history
src/gromacs/trajectoryanalysis/runnercommon.h		diff \| blob \| history
src/gromacs/trajectoryanalysis/tests/moduletest.h		diff \| blob \| history
src/gromacs/utility.h		diff \| blob \| history
src/gromacs/utility/classhelpers.h		diff \| blob \| history
src/gromacs/utility/datafilefinder.h		diff \| blob \| history
src/gromacs/utility/directoryenumerator.h		diff \| blob \| history
src/gromacs/utility/filestream.h		diff \| blob \| history
src/gromacs/utility/inmemoryserializer.h		diff \| blob \| history
src/gromacs/utility/keyvaluetreetransform.h		diff \| blob \| history
src/gromacs/utility/loggerbuilder.h		diff \| blob \| history
src/gromacs/utility/messagestringcollector.h		diff \| blob \| history
src/gromacs/utility/textreader.h		diff \| blob \| history
src/gromacs/utility/textwriter.h		diff \| blob \| history
src/programs/mdrun/tests/moduletest.h		diff \| blob \| history
src/testutils/include/testutils/cmdlinetest.h		diff \| blob \| history
src/testutils/include/testutils/interactivetest.h		diff \| blob \| history
src/testutils/include/testutils/loggertest.h		diff \| blob \| history
src/testutils/include/testutils/refdata.h		diff \| blob \| history
src/testutils/include/testutils/stdiohelper.h		diff \| blob \| history
src/testutils/include/testutils/stringtest.h		diff \| blob \| history
src/testutils/include/testutils/test_device.h		diff \| blob \| history
src/testutils/include/testutils/testfilemanager.h		diff \| blob \| history
src/testutils/include/testutils/testfileredirector.h		diff \| blob \| history
src/testutils/testoptions.cpp		diff \| blob \| history

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