biod.pnpi.spb.ru
/
alexxy
/
gromacs.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
Use unique_ptr for tables
[alexxy/gromacs.git]
/
src
/
2021-02-11
Joe Jordan
Use unique_ptr for tables
tree
|
commitdiff
2021-02-11
Andrey Alekseenko
Fix clang-tidy-11 errors in NBNXM module, part 3
tree
|
commitdiff
2021-02-11
Pascal Merz
Disable cos acceleration for non leap-frog code paths
tree
|
commitdiff
2021-02-11
Andrey Alekseenko
Safer handling of empty cells in Grid::sortColumnsCpuGe...
tree
|
commitdiff
2021-02-11
Artem Zhmurov
Fix MPI build
tree
|
commitdiff
2021-02-10
Andrey Alekseenko
Fix clang-tidy-11 errors in NBNXM module, part 4
tree
|
commitdiff
2021-02-10
Andrey Alekseenko
Fix clang-tidy-11 errors in NBNXM module, part 1
tree
|
commitdiff
2021-02-09
Pascal Merz
Re-fix md-vv Trotter kinetic energy and temperature
tree
|
commitdiff
2021-02-09
Andrey Alekseenko
SYCL compilation and code compatibility changes
tree
|
commitdiff
2021-02-09
Andrey Alekseenko
Fix SYCL clearDeviceBufferAsync<float3>
tree
|
commitdiff
2021-02-09
Artem Zhmurov
Name streams after locality
tree
|
commitdiff
2021-02-09
Andrey Alekseenko
Fix clang-tidy-11 errors in NBNXM module, part 2
tree
|
commitdiff
2021-02-09
Pascal Merz
Make temperature and pressure coupling enums enum classes
tree
|
commitdiff
2021-02-09
Mark Abraham
Remove tree-reduce algorithm
tree
|
commitdiff
2021-02-09
Andrey Alekseenko
dispatchTemplatedFunction: dispatch by bool
tree
|
commitdiff
2021-02-08
Andrey Alekseenko
Disable FPE for SYCL builds
tree
|
commitdiff
2021-02-08
Paul Bauer
Fix clang-tidy-11 for trajectoryanalysis
tree
|
commitdiff
2021-02-08
Paul Bauer
Removed "math.h" included from clang-tidy
tree
|
commitdiff
2021-02-08
Artem Zhmurov
Parametrize constraints test over the test systems
tree
|
commitdiff
2021-02-07
Szilárd Páll
Fix clang-tidy 11 warning in nbnxm ocl kernels
tree
|
commitdiff
2021-02-07
Andrey Alekseenko
Replace custom implementations of GCD with std::gcd
tree
|
commitdiff
2021-02-05
Paul Bauer
Clean up domdec again after clang-tidy-11 fixes
tree
|
commitdiff
2021-02-05
Paul Bauer
Clang-tidy-11 fixes for utility
tree
|
commitdiff
2021-02-05
Paul Bauer
Fix clang-tidy-11 for domdec and utility
tree
|
commitdiff
2021-02-05
Mark Abraham
Remove VMX SIMD
tree
|
commitdiff
2021-02-04
Mark Abraham
Remove support for ARMv7 and NEON
tree
|
commitdiff
2021-02-04
Paul Bauer
Remove no longer needed macro define
tree
|
commitdiff
2021-02-04
Artem Zhmurov
Make LJ combination rule enum into an enum class
tree
|
commitdiff
2021-02-04
Mark Abraham
Ensure no UB in writing forces
tree
|
commitdiff
2021-02-03
Mark Abraham
Fix test of not_null
tree
|
commitdiff
2021-02-03
Paul Bauer
Fix issues found by static analyzer
tree
|
commitdiff
2021-02-03
Mark Abraham
Remove support for Intel classic compiler
tree
|
commitdiff
2021-02-02
Andrey Alekseenko
Remove deprecated env. vars GMX_OCL_NB_ANA_EWALD etc
tree
|
commitdiff
2021-02-02
Artem Zhmurov
Use make_unique instead of reset when private implement...
tree
|
commitdiff
2021-02-02
Mark Abraham
Remove support for Fujitsu Sparc64 HPC-ACE
tree
|
commitdiff
2021-02-01
Mark Abraham
Remove x86 MIC support
tree
|
commitdiff
2021-02-01
Mark Abraham
Replace gmx::Mutex with std::mutex
tree
|
commitdiff
2021-02-01
Paul Bauer
Fix clang-tidy
tree
|
commitdiff
2021-01-31
Mark Abraham
Require MPI 2.0
tree
|
commitdiff
2021-01-29
Artem Zhmurov
Rmove dependency on Constraints object from compute_glo...
tree
|
commitdiff
2021-01-29
Hubert Santuz
Allow MdModules to access the topology during simulatio...
tree
|
commitdiff
2021-01-29
Mark Abraham
Remove PrivateImplPointer in favour of std::unique_ptr
tree
|
commitdiff
2021-01-29
Dmitry Morozov
Added functionality that allows MdModules to disable...
tree
|
commitdiff
2021-01-29
Mark Abraham
Merge branch release-2021
tree
|
commitdiff
2021-01-28
Alan Gray
Move initiation of local CPU force H2D transfer to...
tree
|
commitdiff
2021-01-28
Paul Bauer
Fix formatting in random/seed.cpp
tree
|
commitdiff
2021-01-27
Pascal Merz
Remove constant acceleration groups
tree
|
commitdiff
2021-01-27
Andrey Alekseenko
SYCL: fix typo in a test and clean-up non-standard...
tree
|
commitdiff
2021-01-26
Szilárd Páll
Change default Ewald kernel to tabulated on NVIDIA...
tree
|
commitdiff
2021-01-26
Mark Abraham
Fix default for xpm2gmx tick-mark spacings
tree
|
commitdiff
2021-01-26
Pascal Merz
Enable grompp to read virtual_site1
tree
|
commitdiff
2021-01-25
Mark Abraham
Log progress from gmx msd better
tree
|
commitdiff
2021-01-22
Szilárd Páll
Disable CUDA textures also on NVIDIA Ampere A100
tree
|
commitdiff
2021-01-21
Mark Abraham
Ensure residue name used by pdb2gmx matches rtp name
tree
|
commitdiff
2021-01-21
Andrey Alekseenko
Keep the number of tMPI ranks consistent with the numbe...
tree
|
commitdiff
2021-01-21
Szilárd Páll
Minor naming fix in OpenCL nbnxm kernels
tree
|
commitdiff
2021-01-21
Mark Abraham
Suggest a workaround for pulling with -deffnm
tree
|
commitdiff
2021-01-20
Mark Abraham
Describe the configured precision correctly for mdrun
tree
|
commitdiff
2021-01-20
Paul Bauer
Fix TPR handling for older versions.
tree
|
commitdiff
2021-01-20
Mark Abraham
Fix PaddedVector move constructor
tree
|
commitdiff
2021-01-19
Berk Hess
Change default MTS force group selection
tree
|
commitdiff
2021-01-19
Szilárd Páll
Disable CUDA textures on NVIDIA Volta
tree
|
commitdiff
2021-01-19
Pascal Merz
Fix modular simulator log writing in fresh simulation...
tree
|
commitdiff
2021-01-19
Szilárd Páll
Add G. Gouaillardet to the list of contributors
tree
|
commitdiff
2021-01-12
Pascal Merz
Make inputrec const at simulator level (leaves some...
tree
|
commitdiff
2021-01-12
Berk Hess
Avoid NMR restraints calls for MTS levels > 0
tree
|
commitdiff
2021-01-11
Mark Abraham
Remove mdrun-only build configuration
tree
|
commitdiff
2021-01-11
Pascal Merz
Fix copyright year
tree
|
commitdiff
2021-01-09
Andrey Alekseenko
densityfit: Fix typo in use of iterators
tree
|
commitdiff
2021-01-08
Pascal Merz
Make inputrec const everywhere in modular simulator
tree
|
commitdiff
2021-01-08
Gilles Gouaillardet
ARM_SVE: misc fixes
tree
|
commitdiff
2021-01-07
Pascal Merz
Fix periodic actions test
tree
|
commitdiff
2021-01-07
Gilles Gouaillardet
arm_sve: fix GMX_SIMD_HAVE_4NSIMD_UTIL_{FLOAT,DOUBLE...
tree
|
commitdiff
2021-01-07
Paul Bauer
Merge branch release-2020 into merge-2020-into-2021
tree
|
commitdiff
2021-01-07
Paul Bauer
Write copyright output files as utf8
tree
|
commitdiff
2021-01-07
Pascal Merz
Add trivial const qualifiers for inputrec
tree
|
commitdiff
2021-01-07
Pascal Merz
Simplify test mdp handling
tree
|
commitdiff
2021-01-07
Pascal Merz
Reduce code duplication between Berendsen and c-rescale...
tree
|
commitdiff
2021-01-07
Pascal Merz
Respect user input for nstcomm
tree
|
commitdiff
2021-01-06
Pascal Merz
Remove misleading const qualifier for inputrec in expan...
tree
|
commitdiff
2021-01-06
Pascal Merz
Fix lambda printing const qualifier
tree
|
commitdiff
2021-01-05
Kevin Boyd
Fix broken random seed generation.
tree
|
commitdiff
2021-01-05
Kevin Boyd
Fix broken random seed generation.
tree
|
commitdiff
2021-01-05
Christian Blau
Fix copyright year
tree
|
commitdiff
2021-01-01
Michael Shirts
Expanded ensemble changes.
tree
|
commitdiff
2020-12-18
Alan Gray
Stage bonded kernel atomics through shared memory
tree
|
commitdiff
2020-12-18
Mark Abraham
Merge branch release-2021
tree
|
commitdiff
2020-12-17
Mark Abraham
Update CI image to OneAPI 2021.1.1, add ICC tests.
tree
|
commitdiff
2020-12-16
M. Eric Irrgang
Apply re-formatting to C++ in src/ tree.
tree
|
commitdiff
2020-12-15
Mark Abraham
Update deprecation statuses
tree
|
commitdiff
2020-12-14
Paul Bauer
Fix pull group index handling
tree
|
commitdiff
2020-12-14
Magnus Lundborg
Fix incorrect AWH free-energy output with multiple...
tree
|
commitdiff
2020-12-11
Pascal Merz
Restrict force frame comparison for FEP tests
tree
|
commitdiff
2020-12-11
Pascal Merz
Fix trx frame reading from modular simulator checkpoint...
tree
|
commitdiff
2020-12-10
Berk Hess
A check for perturbed listed pairs beyond rlist
tree
|
commitdiff
2020-12-10
Magnus Lundborg
Improved variable names in FEP nonbonded kernel
tree
|
commitdiff
2020-12-09
Paul Bauer
Fix indexing bug in electric field module
tree
|
commitdiff
2020-12-09
Andrey Alekseenko
Fix defining of EXCLUSION_FORCES in CUDA/OpenCL kernels
tree
|
commitdiff
2020-12-09
Mark Abraham
Fix compilation and tests with icc 19.1.2
tree
|
commitdiff
2020-12-09
Pascal Merz
Fix and activate tests for kv-tree checkpoint functions
tree
|
commitdiff
next