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2014-10-09	Mark Abraham	Clean up cshake() and resolve old issues	commit \| commitdiff \| tree
2014-10-03	Mark Abraham	Move pair-interaction code into listed-forces module	commit \| commitdiff \| tree
2014-10-03	Mark Abraham	Unite code for handling listed pairs	commit \| commitdiff \| tree
2014-10-01	Mark Abraham	Merge release-5-0 into master	commit \| commitdiff \| tree
2014-10-01	Mark Abraham	Version bumps after new release	commit \| commitdiff \| tree
2014-10-01	Mark Abraham	Version 5.0.2	commit \| commitdiff \| tree
2014-09-29	Mark Abraham	Merge "Merge release-4-6 into release-5-0" into release-5-0	commit \| commitdiff \| tree
2014-09-23	Mark Abraham	Renamed bonded module as 'listed-forces'	commit \| commitdiff \| tree
2014-09-23	Mark Abraham	Refactor mdrun integration tests	commit \| commitdiff \| tree
2014-09-22	Mark Abraham	More quotes	commit \| commitdiff \| tree
2014-09-18	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-09-13	Mark Abraham	Teach git that some files are binary	commit \| commitdiff \| tree
2014-09-12	Mark Abraham	Minor changes to mdrun -h descriptions	commit \| commitdiff \| tree
2014-09-11	Mark Abraham	Remove documentation references to optimize-fft	commit \| commitdiff \| tree
2014-09-11	Mark Abraham	Convert domdec code to C++	commit \| commitdiff \| tree
2014-09-05	Mark Abraham	Version bumps after new release	commit \| commitdiff \| tree
2014-09-05	Mark Abraham	Version 5.0.1	commit \| commitdiff \| tree
2014-09-04	Mark Abraham	Created bonded module	commit \| commitdiff \| tree
2014-09-03	Mark Abraham	Fix mis-use of fabs in LAPACK	commit \| commitdiff \| tree
2014-09-03	Mark Abraham	More hacking to get the template to detect and build	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Fix and document issues with template.cpp	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Merge "Merge branch release-4-6 into release-5-0" into...	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Fixes and updates to BlueGene/Q support	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Merge "Merge branch release-4-6 into release-5-0" into...	commit \| commitdiff \| tree
2014-08-29	Mark Abraham	Version bump after 4.6.7	commit \| commitdiff \| tree
2014-08-29	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-08-23	Mark Abraham	Generalize markdown configuration machinery	commit \| commitdiff \| tree
2014-08-23	Mark Abraham	Unify documentation for webpage build	commit \| commitdiff \| tree
2014-08-22	Mark Abraham	Fix zlib usage with TNG	commit \| commitdiff \| tree
2014-08-21	Mark Abraham	Fix mis-use of fabs in LAPACK	commit \| commitdiff \| tree
2014-08-17	Mark Abraham	Remove mdrun -seppot	commit \| commitdiff \| tree
2014-08-16	Mark Abraham	Fix gmx tune_pme with LJ-PME	commit \| commitdiff \| tree
2014-08-16	Mark Abraham	Fix wallcycle counting with md-vv, sd and sd2	commit \| commitdiff \| tree
2014-08-11	Mark Abraham	Add depressing quote	commit \| commitdiff \| tree
2014-07-29	Mark Abraham	Converted md_support.c to C++	commit \| commitdiff \| tree
2014-07-16	Mark Abraham	Quiet gcc-4.8 warnings about unused results	commit \| commitdiff \| tree
2014-07-09	Mark Abraham	Name the tarball how we like it	commit \| commitdiff \| tree
2014-07-09	Mark Abraham	Quieten repeated cmake runs	commit \| commitdiff \| tree
2014-07-08	Mark Abraham	Remove bOK from MD loop	commit \| commitdiff \| tree
2014-07-07	Mark Abraham	Fix tarball and install, particularly for INSTALL	commit \| commitdiff \| tree
2014-07-07	Mark Abraham	Version bump after 4.6.6 release	commit \| commitdiff \| tree
2014-07-01	Mark Abraham	Fix GMock to work on MSVC	commit \| commitdiff \| tree
2014-06-29	Mark Abraham	Version bump for 5.0	commit \| commitdiff \| tree
2014-06-29	Mark Abraham	Add forgotten licenses to COPYING	commit \| commitdiff \| tree
2014-06-29	Mark Abraham	Refer to "mixed" precision in user-facing documentation	commit \| commitdiff \| tree
2014-06-29	Mark Abraham	Convert install guide to markdown	commit \| commitdiff \| tree
2014-06-29	Mark Abraham	Merge "Merge release-4-6 into release-5-0" into release-5-0	commit \| commitdiff \| tree
2014-06-28	Mark Abraham	Merge branch 'release-4-6' into release-5-0	commit \| commitdiff \| tree
2014-06-28	Mark Abraham	Use parallel terminology more consistently	commit \| commitdiff \| tree
2014-06-26	Mark Abraham	Merge "Merge release-4-6 into release-5-0" into release-5-0	commit \| commitdiff \| tree
2014-06-24	Mark Abraham	Manual fixes	commit \| commitdiff \| tree
2014-06-24	Mark Abraham	Converted runner.c to C++	commit \| commitdiff \| tree
2014-06-18	Mark Abraham	Made mdrun warn when generic kernels are used	commit \| commitdiff \| tree
2014-06-06	Mark Abraham	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-06-05	Mark Abraham	New quotes	commit \| commitdiff \| tree
2014-06-05	Mark Abraham	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-06-03	Mark Abraham	Use RNG correctly for v-rescale thermostat	commit \| commitdiff \| tree
2014-06-03	Mark Abraham	Convert repl_ex.c to C++	commit \| commitdiff \| tree
2014-06-02	Mark Abraham	Converted md.c to C++	commit \| commitdiff \| tree
2014-05-30	Mark Abraham	Finalize change from GMX_CPU_ACCELERATION to GMX_SIMD	commit \| commitdiff \| tree
2014-05-24	Mark Abraham	Move tools code to where it is used	commit \| commitdiff \| tree
2014-05-22	Mark Abraham	Add fatal errors for VV and twin-range MTS	commit \| commitdiff \| tree
2014-05-22	Mark Abraham	Clarified docs for use of mdrun -nstlist	commit \| commitdiff \| tree
2014-05-22	Mark Abraham	Refactor string handling for GPU usage report	commit \| commitdiff \| tree
2014-05-20	Mark Abraham	Fix copyright years for new code	commit \| commitdiff \| tree
2014-05-20	Mark Abraham	Add note about correct calling of wallcycle counter	commit \| commitdiff \| tree
2014-05-19	Mark Abraham	Convert gmx_detect_hardware.c to C++	commit \| commitdiff \| tree
2014-05-18	Mark Abraham	Fix indenting of .tpr parameter dump in mdrun log file	commit \| commitdiff \| tree
2014-05-13	Mark Abraham	Prohibit AVX_256 with buggy gcc 4.6.1	commit \| commitdiff \| tree
2014-04-29	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-04-17	Mark Abraham	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-04-16	Mark Abraham	Fix and simplify version matching for running tests	commit \| commitdiff \| tree
2014-04-15	Mark Abraham	Beer + table soccer = quote!	commit \| commitdiff \| tree
2014-04-10	Mark Abraham	Merge branch 'release-4-6' into release-5-0	commit \| commitdiff \| tree
2014-04-10	Mark Abraham	Further fix to gmx tune-pme	commit \| commitdiff \| tree
2014-04-07	Mark Abraham	Fix invalid dereference in g_tune_pme	commit \| commitdiff \| tree
2014-04-07	Mark Abraham	Version bump for 5.0-rc1	commit \| commitdiff \| tree
2014-04-03	Mark Abraham	Move string-parsing code to where it can be reused	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Fixes for g_tune_pme for 5.0	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Fix bug accumulating nrank_pp_intranode on PME ranks	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Re-use gmx_greatest_common_divisor()	commit \| commitdiff \| tree
2014-03-31	Mark Abraham	Remove quote	commit \| commitdiff \| tree
2014-03-26	Mark Abraham	Fix use of inline in IMD	commit \| commitdiff \| tree
2014-03-23	Mark Abraham	Keep CMake quiet about non-detection of optional stuff	commit \| commitdiff \| tree
2014-03-23	Mark Abraham	Merge branch release-4-6	commit \| commitdiff \| tree
2014-03-23	Mark Abraham	Fix print_date_and_time	commit \| commitdiff \| tree
2014-03-18	Mark Abraham	Revert "Added new amber99sb-ildn-bsc0 force field."	commit \| commitdiff \| tree
2014-03-18	Mark Abraham	Removed more stuff related to gmx.ff and gmx2.ff	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	House-keeping for MTTK	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	Merge "Merge branch release-4-6"	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	Merge branch release-4-6	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	Fix perturbation to Verlet scheme when not perturbing	commit \| commitdiff \| tree
2014-03-11	Mark Abraham	Fix MKL linking	commit \| commitdiff \| tree
2014-03-11	Mark Abraham	Avoid array-bounds warnings with gcc 4.8.2	commit \| commitdiff \| tree
2014-03-10	Mark Abraham	Fix dependency on swapcoords enums	commit \| commitdiff \| tree
2014-03-06	Mark Abraham	Fix formatting in install guide	commit \| commitdiff \| tree
2014-03-06	Mark Abraham	Fix CMake syntax error	commit \| commitdiff \| tree
2014-03-05	Mark Abraham	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2014-03-04	Mark Abraham	Add enum and docs for using tpx_version	commit \| commitdiff \| tree
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