Move pair-interaction code into listed-forces module
authorMark Abraham <mark.j.abraham@gmail.com>
Wed, 27 Aug 2014 12:15:24 +0000 (14:15 +0200)
committerGerrit Code Review <gerrit@gerrit.gromacs.org>
Fri, 3 Oct 2014 17:31:18 +0000 (19:31 +0200)
commit4488887e17c2ad98c5885a8181fc460158e1476a
tree547b1ac3acd7513f5eaae47c376d4773148045c5
parentbc9ba47edc5b12b5d4324bcdbf8c5cd3cb048c3d
Move pair-interaction code into listed-forces module

Did C++ conversion, added Doxygen, renamed functions to reflect that
they are now local to a source file, and put them into an anonymous
namespace.

Made glatnr() local to the listed-forces module.

Converted IS_LISTED_LJ_C to static function and made it local
to bonded module.

Removed temporary cycle-warning suppression.

Change-Id: If3a3045021fe7a3f1d67d14f2294551fc41b5422
docs/doxygen/cycle-suppressions.txt
src/gromacs/listed-forces/bonded.cpp
src/gromacs/listed-forces/bonded.h
src/gromacs/listed-forces/listed-internal.cpp [new file with mode: 0644]
src/gromacs/listed-forces/listed-internal.h [new file with mode: 0644]
src/gromacs/listed-forces/pairs.cpp [moved from src/gromacs/gmxlib/nonbonded/pairs.c with 82% similarity]
src/gromacs/listed-forces/pairs.h [moved from src/gromacs/gmxlib/nonbonded/pairs.h with 70% similarity]
src/gromacs/topology/idef.h