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Move index.* to topology/
2014-06-07 Teemu MurtolaMove index.* to topology/
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2014-06-03 Mark AbrahamConvert repl_ex.c to C++
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2014-06-02 Teemu MurtolaMove atomprop.* to topology/
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2014-05-31 Teemu MurtolaMove mtop_util.* and topsort.* to topology/
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2014-05-29 Teemu MurtolaRemove more uses of typedefs.h
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2014-05-25 Teemu MurtolaMove general functions out of typedefs.h
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2014-05-25 Teemu MurtolaRemove some typedefs.h dependencies
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2014-05-25 Teemu MurtolaMove types/topology.h to topology/
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2014-05-24 Teemu MurtolaMove types/idef.h to topology/
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2014-05-21 Teemu MurtolaMove mshift.* to pbcutil/
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2014-05-21 Teemu MurtolaMerge t_graph definition into mshift.h
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2014-05-18 Teemu MurtolaClean up matio.*
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2014-05-17 Teemu MurtolaMore elaborate default handling for FileNameOption
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2014-05-01 Teemu MurtolaFix incorrect limits in FloatOptionStorage
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2014-04-27 Teemu MurtolaMove 'real' definition to utility/real.h
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2014-04-16 Teemu MurtolaRemove unused minvert.h
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2014-04-13 Teemu MurtolaRemove unused shift.h
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2014-04-08 Teemu MurtolaVersion bump for post-5.0 development
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2014-04-04 Teemu MurtolaRemove ancient SGI-specific code
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2014-04-04 Teemu MurtolaClean up gmx_fatal.*
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2014-03-30 Teemu MurtolaClean up string2.h-related includes
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2014-03-27 Teemu MurtolaMove include dependency checks to doc-check
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2014-03-27 Teemu MurtolaBetter automated Doxygen documentation checker
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2014-03-27 Teemu MurtolaMisc. Doxygen fixes
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2014-03-27 Teemu MurtolaMove thread_mpi to src/external/
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2014-03-24 Teemu MurtolaRemove gmxpreprocess from include path
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2014-03-08 Teemu MurtolaRemove some unnecessary declarations
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2014-02-28 Teemu MurtolaResidual SIMD Doxygen improvements
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2014-02-28 Teemu MurtolaMisc. Doxygen configuration changes
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2014-02-26 Teemu MurtolaFix GMX_PRIu32 and GMX_PRIu64 for MSVC
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2014-02-25 Mark AbrahamKeep compilers happy on BG/Q
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2014-02-15 Teemu MurtolaFix some broken links in HTML pages
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2014-02-09 Teemu MurtolaShell completions through Options
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2014-02-03 Mark AbrahamAdd hack to fix genbox
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2014-02-02 Teemu MurtolaExtend valgrind suppressions for OpenMPI
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2014-01-30 Teemu MurtolaOverview docs for using Gromacs as a library
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2014-01-30 Teemu MurtolaRename ProgramInfo to CommandLineProgramContext
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2014-01-29 Teemu MurtolaPrint common options to 'gmx -h'
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2014-01-22 Teemu MurtolaUse local ProgramInfo in CommandLineModuleManager
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2014-01-21 Teemu MurtolaRemove unused split.h
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2014-01-20 Teemu MurtolaFix test reference data
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2014-01-05 Teemu MurtolaSupport for default values for SelectionOption
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2013-12-30 Teemu MurtolaMore robust shell detection in GMXRC
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2013-12-29 Teemu MurtolaMinor vec.h cleanup
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2013-12-24 Teemu MurtolaGet rid of set_default_file_name()
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2013-12-24 Roland SchulzRename remaining large_int to int64
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2013-12-23 Roland SchulzReplace gmx_large_int_t with gmx_int64_t
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2013-12-16 Erik LindahlMoved OpenMP detection to separate file.
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2013-12-08 Teemu MurtolaDon't create symlinks in the build tree
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2013-12-04 Teemu MurtolaFix test build with GMX_BUILD_MDRUN_ONLY
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2013-11-29 Berk HessCreated SIMD module
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2013-11-20 Teemu MurtolaUpdate copyright headers in kernels.
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2013-11-20 Teemu MurtolaUpdate copyright headers in generated kernels.
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2013-11-20 Teemu MurtolaScript to automatically update copyright
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2013-11-17 Teemu MurtolaReformat existing LGPL copyright notices.
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2013-10-30 Alexey Shvetsovgromacs cpp: clean up -Wunused-parameter warnings
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2013-10-18 Teemu MurtolaUpgrade layout file to support Doxygen >=1.8.
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2013-10-07 Teemu MurtolaImprove markup substitution in HelpWriterContext.
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2013-09-28 Teemu MurtolaUse git version info in Doxygen.
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2013-09-24 Teemu MurtolaRemove old generated HTML files.
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2013-09-24 Teemu MurtolaRemove src/contrib/prfn.c and related code.
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2013-09-23 Teemu MurtolaRemove obsolete tools.
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2013-09-20 Teemu MurtolaMerge branch 'release-4-6'
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2013-09-06 Teemu MurtolaSupport for parallel data modules.
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2013-08-24 Teemu Murtola[RFC] Really uniform startup path for all binaries.
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2013-07-22 Teemu MurtolaFix Doxygen warnings.
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2013-07-21 Teemu MurtolaMore files to C++.
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2013-06-28 Teemu MurtolaFix overeager VdW radii change note.
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2013-06-27 Teemu MurtolaProper C++ API for analysis neighborhood search.
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2013-06-27 Teemu MurtolaFix some issues found by cppcheck-1.58.
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2013-06-27 Teemu MurtolaMore binaries into the wrapper binary.
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2013-05-24 Teemu MurtolaMerge branch 'release-4-6'
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2013-04-19 Teemu MurtolaMerge branch 'release-4-5-patches'
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2013-04-10 Teemu MurtolaFix another bug in selection subexpression handling.
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2013-04-10 Teemu MurtolaFix bug in selection subexpression handling.
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2013-04-10 Teemu MurtolaFix another bug in selection subexpression handling.
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2013-04-07 Teemu MurtolaFix bug in selection subexpression handling.
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2013-03-26 Teemu MurtolaImprove master-specific CMake behavior.
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2013-03-26 Teemu MurtolaAdd histogram output for 'gmx gangle'.
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2013-03-24 Teemu MurtolaMerge libgmxana into libgromacs.
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2013-03-08 Teemu MurtolaBetter test assertions for exceptions.
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2013-03-07 Teemu MurtolaImprove enum option interface.
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2013-03-07 Teemu MurtolaMore flexible handling of enum option descriptions.
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2013-03-07 Teemu MurtolaFix copyright notices for new C++ code.
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2013-03-07 Teemu MurtolaUpdate my e-mail address on author lines.
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2013-02-25 Teemu MurtolaUncrustify template.cpp and selection.cpp.
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2013-02-10 Teemu MurtolaManual reformatting in preparation for uncrustify.
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2013-01-13 Teemu MurtolaRemove unused bfunc.h.
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2012-12-30 Teemu MurtolaRemove non-functional PowerPC invsqrt.
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2012-12-30 Teemu MurtolaRemove superfluous memory allocation.
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2012-12-21 Teemu MurtolaMake gmx_cpuid.h self-standing.
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2012-12-21 Teemu MurtolaRemove non-functional compiler override for MacOSX.
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2012-12-17 Teemu MurtolaFix license text printed by programs.
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2012-12-06 Teemu MurtolaFix build of template and other external code.
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2012-11-25 Teemu MurtolaExtended build information output and reference build...
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2012-11-10 Teemu MurtolaOption to create symlinks to g_ana.
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2012-11-10 Teemu MurtolaAlways use relative install paths.
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2012-11-10 Teemu MurtolaRemove obsolete GMX_THREAD_SHM_FDECOMP.
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2012-11-08 Teemu MurtolaInclude Gromacs files with double quotes in C++ code.
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2012-11-08 Teemu MurtolaRemove unnecessary config.h includes in C++ code.
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