Reformat existing LGPL copyright notices.
authorTeemu Murtola <teemu.murtola@gmail.com>
Sun, 6 Oct 2013 05:06:01 +0000 (08:06 +0300)
committerTeemu Murtola <teemu.murtola@gmail.com>
Sun, 17 Nov 2013 19:33:29 +0000 (21:33 +0200)
commitb6b93061b127e3e69e677f0753db2fd8d3ae54e7
tree196faab182ea1c53e7b132308fbd83edd6e98de2
parente4d66353e5acb2a2911e2733508e187d0ced9a03
Reformat existing LGPL copyright notices.

Update files that already had the new-style LGPL copyright notice to
match what the new copyright script expects (slightly different author
list).  Generated kernels need a somewhat separate approach, so skipped
in this change.

Applied with
  git ls-tree --name-only -r HEAD | git check-attr filter --stdin | \
  sed -Ene '/(copyright|uncrustify)$/ {s/:.*//;p;}' | \
  grep -v '_kernel_' | xargs admin/copyright.py --update-header
with the .gitattributes and copyright.py from Ie21365a.

Also adapt COPYING to match more or less the contents of the file in
release-4-6.

Part of #818.

Change-Id: I2885b36f65ac3599a7dfb66efdb7faed55fa9557
319 files changed:
COPYING
admin/git-pre-commit
admin/includedeps.py
cmake/FindGSL.cmake
cmake/Toolchain-Fujitsu-Sparc64-mpi.cmake
cmake/Toolchain-Fujitsu-Sparc64.cmake
cmake/gmxGenerateVersionInfo.cmake
cmake/gmxManageBlueGene.cmake
cmake/gmxOptionUtilities.cmake
cmake/gmxTestAVXMaskload.cmake
doxygen/CMakeLists.txt
share/CMakeLists.txt
share/html/BuildHtmlHelp.cmake
share/html/CMakeLists.txt
share/man/CMakeLists.txt
share/template/CMakeLists.txt
share/template/cmake/FindGROMACS.cmakein
share/template/template.cpp
src/buildinfo.h.cmakein
src/external/gmock-1.6.0/CMakeLists.txt
src/gromacs/CMakeLists.txt
src/gromacs/analysisdata.h
src/gromacs/analysisdata/CMakeLists.txt
src/gromacs/analysisdata/abstractdata.cpp
src/gromacs/analysisdata/abstractdata.h
src/gromacs/analysisdata/analysisdata.cpp
src/gromacs/analysisdata/analysisdata.h
src/gromacs/analysisdata/arraydata.cpp
src/gromacs/analysisdata/arraydata.h
src/gromacs/analysisdata/dataframe.cpp
src/gromacs/analysisdata/dataframe.h
src/gromacs/analysisdata/datamodule.cpp
src/gromacs/analysisdata/datamodule.h
src/gromacs/analysisdata/datamodulemanager.cpp
src/gromacs/analysisdata/datamodulemanager.h
src/gromacs/analysisdata/dataproxy.cpp
src/gromacs/analysisdata/dataproxy.h
src/gromacs/analysisdata/datastorage.cpp
src/gromacs/analysisdata/datastorage.h
src/gromacs/analysisdata/modules/CMakeLists.txt
src/gromacs/analysisdata/modules/average.cpp
src/gromacs/analysisdata/modules/average.h
src/gromacs/analysisdata/modules/displacement.cpp
src/gromacs/analysisdata/modules/displacement.h
src/gromacs/analysisdata/modules/frameaverager.cpp
src/gromacs/analysisdata/modules/frameaverager.h
src/gromacs/analysisdata/modules/histogram.cpp
src/gromacs/analysisdata/modules/histogram.h
src/gromacs/analysisdata/modules/lifetime.cpp
src/gromacs/analysisdata/modules/lifetime.h
src/gromacs/analysisdata/modules/plot.cpp
src/gromacs/analysisdata/modules/plot.h
src/gromacs/analysisdata/paralleloptions.h
src/gromacs/analysisdata/tests/CMakeLists.txt
src/gromacs/analysisdata/tests/analysisdata.cpp
src/gromacs/analysisdata/tests/arraydata.cpp
src/gromacs/analysisdata/tests/average.cpp
src/gromacs/analysisdata/tests/histogram.cpp
src/gromacs/analysisdata/tests/lifetime.cpp
src/gromacs/commandline.h
src/gromacs/commandline/CMakeLists.txt
src/gromacs/commandline/cmdlinehelpcontext.cpp
src/gromacs/commandline/cmdlinehelpcontext.h
src/gromacs/commandline/cmdlinehelpwriter.cpp
src/gromacs/commandline/cmdlinehelpwriter.h
src/gromacs/commandline/cmdlinemodule.h
src/gromacs/commandline/cmdlinemodulemanager.cpp
src/gromacs/commandline/cmdlinemodulemanager.h
src/gromacs/commandline/cmdlineparser.cpp
src/gromacs/commandline/cmdlineparser.h
src/gromacs/commandline/tests/CMakeLists.txt
src/gromacs/commandline/tests/cmdlinehelpwriter.cpp
src/gromacs/commandline/tests/cmdlinemodulemanager.cpp
src/gromacs/commandline/tests/cmdlineparser.cpp
src/gromacs/fft/CMakeLists.txt
src/gromacs/gmxana/CMakeLists.txt
src/gromacs/gmxana/gmx_anadock.c
src/gromacs/gmxana/gmx_do_dssp.c
src/gromacs/gmxana/gmx_make_edi.c
src/gromacs/gmxana/gmx_make_ndx.c
src/gromacs/gmxana/gmx_mk_angndx.c
src/gromacs/gmxana/gmx_sigeps.c
src/gromacs/gmxlib/gmx_detect_hardware.c
src/gromacs/gmxlib/gmx_thread_affinity.c
src/gromacs/gmxlib/nonbonded/nb_generic_adress.c
src/gromacs/gmxlib/statistics/histogram.c
src/gromacs/gmxlib/trajana/displacement.c
src/gromacs/legacyheaders/displacement.h
src/gromacs/legacyheaders/gmx_simd4_macros.h
src/gromacs/legacyheaders/gmx_simd4_ref.h
src/gromacs/legacyheaders/gmx_simd_macros.h
src/gromacs/legacyheaders/gmx_simd_math_double.h
src/gromacs/legacyheaders/gmx_simd_math_single.h
src/gromacs/legacyheaders/gmx_simd_ref.h
src/gromacs/legacyheaders/gmx_simd_vec.h
src/gromacs/legacyheaders/gmx_thread_affinity.h
src/gromacs/legacyheaders/gpu_utils.h
src/gromacs/legacyheaders/histogram.h
src/gromacs/legacyheaders/nbnxn_cuda_data_mgmt.h
src/gromacs/legacyheaders/string2.h
src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_types.h
src/gromacs/mdlib/nbnxn_search_simd_2xnn.h
src/gromacs/mdlib/nbnxn_search_simd_4xn.h
src/gromacs/mdlib/pme_simd4.h
src/gromacs/onlinehelp/CMakeLists.txt
src/gromacs/onlinehelp/helpformat.cpp
src/gromacs/onlinehelp/helpformat.h
src/gromacs/onlinehelp/helpmanager.cpp
src/gromacs/onlinehelp/helpmanager.h
src/gromacs/onlinehelp/helptopic.cpp
src/gromacs/onlinehelp/helptopic.h
src/gromacs/onlinehelp/helptopicinterface.h
src/gromacs/onlinehelp/helpwritercontext.cpp
src/gromacs/onlinehelp/helpwritercontext.h
src/gromacs/onlinehelp/tests/CMakeLists.txt
src/gromacs/onlinehelp/tests/helpformat.cpp
src/gromacs/onlinehelp/tests/helpmanager.cpp
src/gromacs/options.h
src/gromacs/options/CMakeLists.txt
src/gromacs/options/abstractoption.cpp
src/gromacs/options/abstractoption.h
src/gromacs/options/abstractoptionstorage.h
src/gromacs/options/basicoptions.cpp
src/gromacs/options/basicoptions.h
src/gromacs/options/basicoptionstorage.h
src/gromacs/options/filenameoption.cpp
src/gromacs/options/filenameoption.h
src/gromacs/options/filenameoptionstorage.h
src/gromacs/options/optionfiletype.h
src/gromacs/options/optionflags.h
src/gromacs/options/options-impl.h
src/gromacs/options/options.cpp
src/gromacs/options/options.h
src/gromacs/options/optionsassigner.cpp
src/gromacs/options/optionsassigner.h
src/gromacs/options/optionstoragetemplate.h
src/gromacs/options/optionsvisitor.cpp
src/gromacs/options/optionsvisitor.h
src/gromacs/options/tests/CMakeLists.txt
src/gromacs/options/tests/abstractoptionstorage.cpp
src/gromacs/options/tests/filenameoption.cpp
src/gromacs/options/tests/option.cpp
src/gromacs/options/tests/optionsassigner.cpp
src/gromacs/options/tests/timeunitmanager.cpp
src/gromacs/options/timeunitmanager.cpp
src/gromacs/options/timeunitmanager.h
src/gromacs/selection.h
src/gromacs/selection/CMakeLists.txt
src/gromacs/selection/centerofmass.cpp
src/gromacs/selection/centerofmass.h
src/gromacs/selection/compiler.cpp
src/gromacs/selection/compiler.h
src/gromacs/selection/evaluate.cpp
src/gromacs/selection/evaluate.h
src/gromacs/selection/indexutil.cpp
src/gromacs/selection/indexutil.h
src/gromacs/selection/keywords.h
src/gromacs/selection/mempool.cpp
src/gromacs/selection/mempool.h
src/gromacs/selection/nbsearch.cpp
src/gromacs/selection/nbsearch.h
src/gromacs/selection/params.cpp
src/gromacs/selection/parser.cpp
src/gromacs/selection/parser.h
src/gromacs/selection/parser.y
src/gromacs/selection/parser_internal.h
src/gromacs/selection/parsetree.cpp
src/gromacs/selection/parsetree.h
src/gromacs/selection/poscalc.cpp
src/gromacs/selection/poscalc.h
src/gromacs/selection/position.cpp
src/gromacs/selection/position.h
src/gromacs/selection/scanner.cpp
src/gromacs/selection/scanner.h
src/gromacs/selection/scanner.l
src/gromacs/selection/scanner_internal.cpp
src/gromacs/selection/scanner_internal.h
src/gromacs/selection/selection.cpp
src/gromacs/selection/selection.h
src/gromacs/selection/selectioncollection-impl.h
src/gromacs/selection/selectioncollection.cpp
src/gromacs/selection/selectioncollection.h
src/gromacs/selection/selectionenums.h
src/gromacs/selection/selectionfileoption.h
src/gromacs/selection/selectionfileoptionstorage.h
src/gromacs/selection/selectionoption.cpp
src/gromacs/selection/selectionoption.h
src/gromacs/selection/selectionoptionmanager.cpp
src/gromacs/selection/selectionoptionmanager.h
src/gromacs/selection/selectionoptionstorage.h
src/gromacs/selection/selelem.cpp
src/gromacs/selection/selelem.h
src/gromacs/selection/selhelp.cpp
src/gromacs/selection/selhelp.h
src/gromacs/selection/selmethod.cpp
src/gromacs/selection/selmethod.h
src/gromacs/selection/selparam.h
src/gromacs/selection/selvalue.cpp
src/gromacs/selection/selvalue.h
src/gromacs/selection/sm_compare.cpp
src/gromacs/selection/sm_distance.cpp
src/gromacs/selection/sm_insolidangle.cpp
src/gromacs/selection/sm_keywords.cpp
src/gromacs/selection/sm_merge.cpp
src/gromacs/selection/sm_permute.cpp
src/gromacs/selection/sm_position.cpp
src/gromacs/selection/sm_same.cpp
src/gromacs/selection/sm_simple.cpp
src/gromacs/selection/symrec.cpp
src/gromacs/selection/symrec.h
src/gromacs/selection/tests/CMakeLists.txt
src/gromacs/selection/tests/gensphere.py
src/gromacs/selection/tests/indexutil.cpp
src/gromacs/selection/tests/nbsearch.cpp
src/gromacs/selection/tests/poscalc.cpp
src/gromacs/selection/tests/selectioncollection.cpp
src/gromacs/selection/tests/selectionoption.cpp
src/gromacs/selection/tests/toputils.cpp
src/gromacs/selection/tests/toputils.h
src/gromacs/timing/CMakeLists.txt
src/gromacs/trajectoryanalysis.h
src/gromacs/trajectoryanalysis/CMakeLists.txt
src/gromacs/trajectoryanalysis/analysismodule.cpp
src/gromacs/trajectoryanalysis/analysismodule.h
src/gromacs/trajectoryanalysis/analysissettings-impl.h
src/gromacs/trajectoryanalysis/analysissettings.cpp
src/gromacs/trajectoryanalysis/analysissettings.h
src/gromacs/trajectoryanalysis/cmdlinerunner.cpp
src/gromacs/trajectoryanalysis/cmdlinerunner.h
src/gromacs/trajectoryanalysis/modules.cpp
src/gromacs/trajectoryanalysis/modules.h
src/gromacs/trajectoryanalysis/modules/angle.cpp
src/gromacs/trajectoryanalysis/modules/angle.h
src/gromacs/trajectoryanalysis/modules/distance.cpp
src/gromacs/trajectoryanalysis/modules/distance.h
src/gromacs/trajectoryanalysis/modules/freevolume.cpp
src/gromacs/trajectoryanalysis/modules/freevolume.h
src/gromacs/trajectoryanalysis/modules/select.cpp
src/gromacs/trajectoryanalysis/modules/select.h
src/gromacs/trajectoryanalysis/runnercommon.cpp
src/gromacs/trajectoryanalysis/runnercommon.h
src/gromacs/trajectoryanalysis/tests/CMakeLists.txt
src/gromacs/trajectoryanalysis/tests/angle.cpp
src/gromacs/trajectoryanalysis/tests/distance.cpp
src/gromacs/trajectoryanalysis/tests/freevolume.cpp
src/gromacs/trajectoryanalysis/tests/moduletest.cpp
src/gromacs/trajectoryanalysis/tests/moduletest.h
src/gromacs/trajectoryanalysis/tests/select.cpp
src/gromacs/trajectoryanalysis/tests/test_selection.cpp
src/gromacs/utility.h
src/gromacs/utility/CMakeLists.txt
src/gromacs/utility/arrayref.h
src/gromacs/utility/common.h
src/gromacs/utility/errorcodes.cpp
src/gromacs/utility/errorcodes.h
src/gromacs/utility/errorformat.cpp
src/gromacs/utility/errorformat.h
src/gromacs/utility/exceptions.cpp
src/gromacs/utility/exceptions.h
src/gromacs/utility/file.cpp
src/gromacs/utility/file.h
src/gromacs/utility/flags.h
src/gromacs/utility/gitversion.c.cmakein
src/gromacs/utility/gitversion.h
src/gromacs/utility/gmx_header_config.h
src/gromacs/utility/gmx_header_config_gen.h.cmakein
src/gromacs/utility/gmxassert.cpp
src/gromacs/utility/gmxassert.h
src/gromacs/utility/gmxmpi.h
src/gromacs/utility/gmxregex.cpp
src/gromacs/utility/gmxregex.h
src/gromacs/utility/init.cpp
src/gromacs/utility/init.h
src/gromacs/utility/messagestringcollector.cpp
src/gromacs/utility/messagestringcollector.h
src/gromacs/utility/path.cpp
src/gromacs/utility/path.h
src/gromacs/utility/programinfo.cpp
src/gromacs/utility/programinfo.h
src/gromacs/utility/stringutil.cpp
src/gromacs/utility/stringutil.h
src/gromacs/utility/tests/CMakeLists.txt
src/gromacs/utility/tests/programinfo.cpp
src/gromacs/utility/tests/stringutil.cpp
src/gromacs/utility/uniqueptr.h
src/gromacs/version.h.cmakein
src/programs/CMakeLists.txt
src/programs/CreateLinks.cmake.cmakein
src/programs/gmx/gmx.cpp
src/programs/gmx/legacymodules.cpp
src/programs/gmx/legacymodules.h
src/programs/gmx/tomorse.h
src/programs/mdrun/mdrun_main.h
src/programs/mdrun_main.cpp
src/testutils/CMakeLists.txt
src/testutils/TestMacros.cmake
src/testutils/cmdlinetest.cpp
src/testutils/cmdlinetest.h
src/testutils/datatest.cpp
src/testutils/datatest.h
src/testutils/mock_datamodule.cpp
src/testutils/mock_datamodule.h
src/testutils/mock_helptopic.cpp
src/testutils/mock_helptopic.h
src/testutils/refdata.cpp
src/testutils/refdata.h
src/testutils/stringtest.cpp
src/testutils/stringtest.h
src/testutils/testasserts.h
src/testutils/testexceptions.h
src/testutils/testfilemanager.cpp
src/testutils/testfilemanager.h
src/testutils/testoptions.cpp
src/testutils/testoptions.h
src/testutils/tests/CMakeLists.txt
src/testutils/tests/refdata.cpp
src/testutils/unittest_main.cpp
tests/CMakeLists.txt
tests/CppCheck.cmake