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2014-06-24	Mark Abraham	Converted runner.c to C++	commit \| commitdiff \| tree
2014-06-24	Paul van Maaren	Increased precision of distance output	commit \| commitdiff \| tree
2014-06-19	Rossen Apostolov	Small typos in surface tension description.	commit \| commitdiff \| tree
2014-06-19	Magnus Lundborg	Bumped the TNG library to the latest version.	commit \| commitdiff \| tree
2014-06-18	Rossen Apostolov	Added reference to cmap in pdb2gmx.	commit \| commitdiff \| tree
2014-06-18	Mark Abraham	Made mdrun warn when generic kernels are used	commit \| commitdiff \| tree
2014-06-15	Teemu Murtola	Convert gmx_residuetype_t to a non-pointer	commit \| commitdiff \| tree
2014-06-15	Teemu Murtola	Remove unused figures from share/html/	commit \| commitdiff \| tree
2014-06-14	Rossen Apostolov	Added tip5pe water model to oplsa.	commit \| commitdiff \| tree
2014-06-13	Roland Schulz	Make nbnxn template and generated files match	commit \| commitdiff \| tree
2014-06-11	Berk Hess	Decoupled repl_ex_nst from nstcalcenergy	commit \| commitdiff \| tree
2014-06-09	Rossen Apostolov	Install libraries in correct directories on multiarch...	commit \| commitdiff \| tree
2014-06-09	Berk Hess	Set make_ndx max name length and count to 1024	commit \| commitdiff \| tree
2014-06-09	Erik Lindahl	Fixed the output format of g_principal	commit \| commitdiff \| tree
2014-06-09	Erik Lindahl	Modify single/double EPS to agree with ISO C	commit \| commitdiff \| tree
2014-06-07	David van der Spoel	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-06-07	Erik Lindahl	Added package version to tng_io CMakelists.txt	commit \| commitdiff \| tree
2014-06-05	Berk Hess	Fix constraint virial with multiple time stepping	commit \| commitdiff \| tree
2014-06-05	Mark Abraham	New quotes	commit \| commitdiff \| tree
2014-06-05	Mark Abraham	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-06-04	Rossen Apostolov	Updated C-/N-terminal partial charges in Amber03.ff.	commit \| commitdiff \| tree
2014-06-03	Mark Abraham	Use RNG correctly for v-rescale thermostat	commit \| commitdiff \| tree
2014-06-02	David van der Spoel	Fixed wrong journal reference in manual	commit \| commitdiff \| tree
2014-06-01	Szilárd Páll	Add quote on the kT-kj/mol conversion factor	commit \| commitdiff \| tree
2014-06-01	Erik Lindahl	Fixed typo in manual	commit \| commitdiff \| tree
2014-05-31	David van der Spoel	Permit trjconv to read and write velocities with TNG...	commit \| commitdiff \| tree
2014-05-30	Mark Abraham	Finalize change from GMX_CPU_ACCELERATION to GMX_SIMD	commit \| commitdiff \| tree
2014-05-24	Rossen Apostolov	Simplified section "Porting".	commit \| commitdiff \| tree
2014-05-24	Teemu Murtola	Move pbc.* to pbcutil/	commit \| commitdiff \| tree
2014-05-22	Teemu Murtola	Move cinvsqrtdata.c to math/ and remove Fortran remnants	commit \| commitdiff \| tree
2014-05-22	Rossen Apostolov	Normal modes don't work currently with virtual sites...	commit \| commitdiff \| tree
2014-05-22	Teemu Murtola	Fix static group list indices in selection prompt	commit \| commitdiff \| tree
2014-05-22	Berk Hess	Avoid energy drift with verlet-buffer-tolerance	commit \| commitdiff \| tree
2014-05-22	Mark Abraham	Add fatal errors for VV and twin-range MTS	commit \| commitdiff \| tree
2014-05-22	Mark Abraham	Clarified docs for use of mdrun -nstlist	commit \| commitdiff \| tree
2014-05-22	Teemu Murtola	Merge t_pbc definition into pbc.h	commit \| commitdiff \| tree
2014-05-22	Mark Abraham	Refactor string handling for GPU usage report	commit \| commitdiff \| tree
2014-05-20	Teemu Murtola	Move rmpbc.* to pbcutil/	commit \| commitdiff \| tree
2014-05-20	Justin Lemkul	Improvements to the g_lie help description.	commit \| commitdiff \| tree
2014-05-20	Rossen Apostolov	Added a note about using direction-periodic pulling.	commit \| commitdiff \| tree
2014-05-20	Rossen Apostolov	Added a note about unsupported Verlet cutoff + Buckingham.	commit \| commitdiff \| tree
2014-05-20	Mark Abraham	Add note about correct calling of wallcycle counter	commit \| commitdiff \| tree
2014-05-19	Mark Abraham	Convert gmx_detect_hardware.c to C++	commit \| commitdiff \| tree
2014-05-18	Mark Abraham	Fix indenting of .tpr parameter dump in mdrun log file	commit \| commitdiff \| tree
2014-05-18	Teemu Murtola	Clean up math/	commit \| commitdiff \| tree
2014-05-17	Roland Schulz	Clean-up gmx_eof	commit \| commitdiff \| tree
2014-05-17	Teemu Murtola	Unit tests for parse_common_args() file options	commit \| commitdiff \| tree
2014-05-14	Teemu Murtola	Move physics.* to math/units.*	commit \| commitdiff \| tree
2014-05-14	Roland Schulz	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-05-09	Alexey Shvetsov	Fix clang 3.5 warnings regarding abs	commit \| commitdiff \| tree
2014-05-09	Berk Hess	Minor tweaks to the DD setup	commit \| commitdiff \| tree
2014-05-09	Roland Schulz	Fix comparison of array to NULL	commit \| commitdiff \| tree
2014-05-09	Roland Schulz	Merge "Merge branch release-4-6 into release-5-0" into...	commit \| commitdiff \| tree
2014-05-09	Roland Schulz	Fix OpenMP scope error	commit \| commitdiff \| tree
2014-04-29	Berk Hess	Removed truncation of nrdf in v-rescale thermostat	commit \| commitdiff \| tree
2014-04-27	Roland Schulz	Fix cppcheck 1.64 warnings	commit \| commitdiff \| tree
2014-04-24	Magnus Lundborg	More efficient TNG selection group creation	commit \| commitdiff \| tree
2014-04-23	Berk Hess	Fixed nbnxn FE list allocation issue	commit \| commitdiff \| tree
2014-04-21	Michael Shirts	Issue warnings for potential switch w/o defining switch...	commit \| commitdiff \| tree
2014-04-17	Teemu Murtola	Move vec.h to math/	commit \| commitdiff \| tree
2014-04-17	Mark Abraham	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-04-16	Magnus Lundborg	Fixed bug inverting compression precision.	commit \| commitdiff \| tree
2014-04-16	Mark Abraham	Fix and simplify version matching for running tests	commit \| commitdiff \| tree
2014-04-16	Teemu Murtola	Fix typo in fatalerror.h	commit \| commitdiff \| tree
2014-04-16	Teemu Murtola	Refactor gmx_fatal()	commit \| commitdiff \| tree
2014-04-15	Mark Abraham	Beer + table soccer = quote!	commit \| commitdiff \| tree
2014-04-13	Teemu Murtola	Remove utility -> fileio dependencies	commit \| commitdiff \| tree
2014-04-13	Teemu Murtola	Clean up futil.*	commit \| commitdiff \| tree
2014-04-10	Teemu Murtola	Clean up and fix issues in doc-check scripts	commit \| commitdiff \| tree
2014-04-10	Carsten Kutzner	Re-use gmx_within_tol from math/utilities instead of...	commit \| commitdiff \| tree
2014-04-10	Teemu Murtola	Remove utility/ dependencies on network.h and main.h	commit \| commitdiff \| tree
2014-04-08	Teemu Murtola	Remove some utility -> legacyheaders dependencies	commit \| commitdiff \| tree
2014-04-08	Teemu Murtola	Move gmx_fatal.* to utility/fatalerror.*	commit \| commitdiff \| tree
2014-04-07	Mark Abraham	Fix invalid dereference in g_tune_pme	commit \| commitdiff \| tree
2014-04-07	Erik Lindahl	Make sure water optimization is disabled for esoteric...	commit \| commitdiff \| tree
2014-04-07	Teemu Murtola	Doxygen documentation for version.h	commit \| commitdiff \| tree
2014-04-03	Mark Abraham	Move string-parsing code to where it can be reused	commit \| commitdiff \| tree
2014-04-02	Roland Schulz	Add doc for spec. values of GMX_MAXBACKUP	commit \| commitdiff \| tree
2014-04-02	David van der Spoel	Removed possibility of compiling with GSL.	commit \| commitdiff \| tree
2014-04-02	Teemu Murtola	Move string2.* to utility/cstringutil.*	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Fixes for g_tune_pme for 5.0	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Fix bug accumulating nrank_pp_intranode on PME ranks	commit \| commitdiff \| tree
2014-04-02	Berk Hess	Added LJ-PME and LJ Pot-switch to PME load estimate	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Re-use gmx_greatest_common_divisor()	commit \| commitdiff \| tree
2014-04-01	Teemu Murtola	Move smalloc.h to utility/	commit \| commitdiff \| tree
2014-03-31	David van der Spoel	Fixed compilation issue in fgrid.cpp due to int/enum	commit \| commitdiff \| tree
2014-03-31	Mark Abraham	Remove quote	commit \| commitdiff \| tree
2014-03-31	Rossen Apostolov	Added CMake support for Extrae.	commit \| commitdiff \| tree
2014-03-31	Teemu Murtola	Clean up smalloc.h	commit \| commitdiff \| tree
2014-03-31	Carsten Kutzner	Fix documentation of swap/enums.h	commit \| commitdiff \| tree
2014-03-31	Roland Schulz	Disable shared libraries by default for mdrun-only	commit \| commitdiff \| tree
2014-03-31	Teemu Murtola	Remove dependency on commandline/ from oenv.cpp	commit \| commitdiff \| tree
2014-03-29	Christian Wennberg	Free-energy support for LJ-PME	commit \| commitdiff \| tree
2014-03-29	Teemu Murtola	Optimize intermodule dependencies	commit \| commitdiff \| tree
2014-03-29	Teemu Murtola	Improve version information handling	commit \| commitdiff \| tree
2014-03-29	Teemu Murtola	Better include dependency graph generator	commit \| commitdiff \| tree
2014-03-28	Carsten Kutzner	Fix documentation issues for interactive MD module.	commit \| commitdiff \| tree
2014-03-28	Christian Wennberg	New VDW kernel flavour for LJ-PME and updated group...	commit \| commitdiff \| tree
2014-03-26	Daniel Landau	Add Cray compiler support	commit \| commitdiff \| tree
2014-03-26	Carsten Kutzner	Documentation house-keeping in file swapcoords.c	commit \| commitdiff \| tree
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