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Refactor gmx_reverse_top_t
[alexxy/gromacs.git]
/
src
/
2021-05-17
Mark Abraham
Refactor gmx_reverse_top_t
tree
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commitdiff
2021-05-17
Artem Zhmurov
Make NBNXM force getter available in all backends
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commitdiff
2021-05-15
Paul Bauer
Use InheritParentConfig: true in clang-tidy files
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commitdiff
2021-05-14
Artem Zhmurov
Use appendIf(..) method of MessageStringCollector where...
tree
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commitdiff
2021-05-14
Artem Zhmurov
Remove extra device force getter from NBNXM
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commitdiff
2021-05-13
Artem Zhmurov
Add appendIf(..) method and tests for MessageStringColl...
tree
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commitdiff
2021-05-13
Mark Abraham
Decouple update group handling from domain decompositio...
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commitdiff
2021-05-11
Andrey Alekseenko
Add SYCL implementation of X/V scale kernel
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commitdiff
2021-05-11
Artem Zhmurov
Make common Update-Constraints code backend-agnostic
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commitdiff
2021-05-11
Artem Zhmurov
Name the MDRun FEP test binary consistently
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commitdiff
2021-05-11
Szilárd Páll
Remove GMX_FORCE_DO_NOT_NEED_NORMAL_FORCE legacy flag...
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commitdiff
2021-05-11
Paul Bauer
Add test for single residue chain
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commitdiff
2021-05-11
Artem Zhmurov
Fix clang-format
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commitdiff
2021-05-11
Artem Zhmurov
Fix conditional in assertion
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commitdiff
2021-05-11
Mark Abraham
Apply more clang-tidy-11
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commitdiff
2021-05-11
Artem Zhmurov
Fix compiler warning and use static_assert
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commitdiff
2021-05-11
Szilárd Páll
Eliminate duplicate CPU->GPU copy of x
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commitdiff
2021-05-11
Andrey Alekseenko
Add SYCL implementation of GPU F buffer operations
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commitdiff
2021-05-11
Mark Abraham
Apply clang-format-11
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commitdiff
2021-05-11
Mark Abraham
Rename pdb2gmx tests
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commitdiff
2021-05-10
Joe Jordan
Fix harmless bug in nonbonded FEP tests
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commitdiff
2021-05-10
Andrey Alekseenko
Add SYCL implementation of GPU X buffer operations
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commitdiff
2021-05-10
Andrey Alekseenko
Make GPU X buffer ops platform-agnostic
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commitdiff
2021-05-10
Andrey Alekseenko
Fix shift_left/right function on hipSYCL
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commitdiff
2021-05-10
Andrey Alekseenko
SYCL: Allow copying an uninitialized DeviceBuffer object
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commitdiff
2021-05-10
Szilárd Páll
Move PME-GPU do_force() local bool into stepWorkload
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commitdiff
2021-05-10
Pascal Merz
Clarify builder-time data, introduce simulation-time...
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commitdiff
2021-05-07
Berk Hess
Make debug printing work with empty domains
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commitdiff
2021-05-07
Paul Bauer
Merge branch release-2021 into merge-2021-into-master
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commitdiff
2021-05-06
Paul Bauer
Remove UB in ArrayRef from array
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commitdiff
2021-05-06
Pascal Merz
Unify temperature and pressure coupling connection
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commitdiff
2021-05-05
Berk Hess
Convert t_oriresdata to C++
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commitdiff
2021-05-05
Pascal Merz
Allow elements to request local kinetic energy update
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commitdiff
2021-05-05
Andrey Alekseenko
Make common GPU Force Reduction code backend-agnostic
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commitdiff
2021-05-05
Paul Bauer
Fix include order
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commitdiff
2021-05-05
Pascal Merz
Zero modular simulator total energy
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commitdiff
2021-05-05
Paul Bauer
Apply misc clang-tidy-11 fixes
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commitdiff
2021-05-05
Mark Abraham
Restore pull output to rerun
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commitdiff
2021-05-05
Mark Abraham
Break up dd_init_bondeds
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commitdiff
2021-05-05
Joe Jordan
Apply clang-tidy11 to tools
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commitdiff
2021-05-05
ejjordan
Remove dead functions from statistics module
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commitdiff
2021-05-05
Joe Jordan
Pass ArrayRefs to dispatchNonbondedKernel
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commitdiff
2021-05-05
Joe Jordan
Remove mdatoms from coupling code and use more ArrayRef
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commitdiff
2021-05-04
ejjordan
Remove mdatoms from do_walls
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commitdiff
2021-05-04
Andrey Alekseenko
Fix GCC-11 warning
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commitdiff
2021-05-04
ejjordan
Remove mdatoms from vsite
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commitdiff
2021-05-04
Joe Jordan
Apply clang-tidy11 to statistics
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commitdiff
2021-05-04
ejjordan
Use enum : bool in commandline test
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commitdiff
2021-05-04
Paul Bauer
Use correct size for force vector in mdoutf
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commitdiff
2021-05-04
ejjordan
Preven extension of DDBondedChecking
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commitdiff
2021-05-04
Mark Abraham
Decouple update-group aspects of vsites and constraints
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commitdiff
2021-05-04
Mark Abraham
Remove some use of charge groups from domdec
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commitdiff
2021-05-04
Eliane Briand
Respect umask when creating temporary file
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commitdiff
2021-05-03
ejjordan
Remove mdatoms from pairs in listed forces
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commitdiff
2021-05-03
Artem Zhmurov
Fix copyright year
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commitdiff
2021-05-03
Mark Abraham
Respect umask when creating temporary file
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commitdiff
2021-05-03
ejjordan
Remove mdatoms from expanded
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commitdiff
2021-05-03
Gilles Gouaillardet
densityfitting: add missing include file
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commitdiff
2021-05-03
Artem Zhmurov
Fix clang-format
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commitdiff
2021-05-03
Berk Hess
Clean up DD bonded interaction assignment
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commitdiff
2021-05-03
Mark Abraham
Replace bool with enum class in DomdecOptions
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commitdiff
2021-05-03
Joe Jordan
ArrayRef in pme
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commitdiff
2021-05-03
Mark Abraham
Remove redundant store
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commitdiff
2021-05-03
Mark Abraham
Fully define IndexGroupsAndNames
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commitdiff
2021-05-03
Szilárd Páll
Allow using CPU PME with DD and GPU update
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commitdiff
2021-04-30
Mark Abraham
Prohibit SETTLE interactions on atoms with perturbed...
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commitdiff
2021-04-30
Christoph Junghans
fix build on F34
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commitdiff
2021-04-27
ejjordan
Remove leftover function declaration from nbnxm atomdata
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commitdiff
2021-04-27
Joe Jordan
Apply clang-tidy11 to mdrun
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commitdiff
2021-04-27
Joe Jordan
Unify constructor of nbnxn_atomdata_t
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commitdiff
2021-04-27
Joe Jordan
Constructor for t_mde_delta_h_coll
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commitdiff
2021-04-27
ejjordan
Increase const correctness of t_mdatoms use in md.cpp
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commitdiff
2021-04-26
Joe Jordan
Remove inputrec from initialize_lambdas signature
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commitdiff
2021-04-26
ejjordan
Apply clang-tidy11 to correlationfunctions
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commitdiff
2021-04-26
ejjordan
Apply clang-tidy11 to simd
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commitdiff
2021-04-26
ejjordan
Apply clang-tidy11 to random
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commitdiff
2021-04-26
ejjordan
Apply clang-tidy11 to commandline
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commitdiff
2021-04-26
Paul Bauer
Fix MSVC build
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commitdiff
2021-04-26
Artem Zhmurov
Clang-11 fixes for applied forces
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commitdiff
2021-04-26
Paul Bauer
Fix incorrect handling of single residue chains
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commitdiff
2021-04-23
Berk Hess
Specialize jacobi() for 3 dimensions
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commitdiff
2021-04-23
Artem Zhmurov
Make SETTLE setup code platform-agnostic
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commitdiff
2021-04-23
Artem Zhmurov
Apply clang-11 fixes for fileio
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commitdiff
2021-04-23
Andrey Alekseenko
Fix beningn GCC 10.2 Wstringop-truncation warnings
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commitdiff
2021-04-23
Artem Zhmurov
Clang-11 fixes for PME and FFT
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commitdiff
2021-04-23
Pascal Merz
Prepare virial calculation for legacy md-vv pressure...
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commitdiff
2021-04-22
Andrey Alekseenko
Fix buffer overrun when invalid value passed to numPbcD...
tree
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commitdiff
2021-04-22
Artem Zhmurov
Make LINCS setup code platform-agnostic
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commitdiff
2021-04-22
Mark Abraham
Improve UpdateGroups testing infra
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commitdiff
2021-04-22
Paul Bauer
Fixes from clang-tidy-11 for signal handling
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commitdiff
2021-04-22
Joe Jordan
Vectors in history_t
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commitdiff
2021-04-22
Paul Bauer
Fix MSVC build
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commitdiff
2021-04-22
Szilárd Páll
Fix doxygen of the SYCL atomicFetchAdd
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commitdiff
2021-04-22
Paul Bauer
Fix build with gcc-11
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commitdiff
2021-04-22
Mark Abraham
More renaming for UpdateGroups
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commitdiff
2021-04-21
ejjordan
Finish removing t_mdatoms from update module
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commitdiff
2021-04-21
Szilárd Páll
Remove isnormal() check around the atomic increment
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commitdiff
2021-04-21
Joe Jordan
Mostly remove t_mdatoms from update signatures
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commitdiff
2021-04-21
Joe Jordan
clang-tidy-11 fixes for gmxpreprocess
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commitdiff
2021-04-21
Pascal Merz
Introduce TimeStep and Offset strong types
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commitdiff
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