Use const refs in init_nb_verlet
[alexxy/gromacs.git] / src /
2021-02-19 Joe JordanUse const refs in init_nb_verlet
2021-02-19 Andrey AlekseenkoReplace sqrt with std::sqrt in mdatoms.cpp
2021-02-19 ejjordanPass restraint data structures to bonded functions
2021-02-19 Artem ZhmurovUnify and clarify a couple of macro definitions in...
2021-02-19 Joe JordanRename and add doxygen to reaction field params in...
2021-02-18 Joe JordanUse unique_ptr for forcerec in runner
2021-02-18 Andrey AlekseenkoMake the use of GpuEventSynchronizer in SYCL conformant...
2021-02-18 ejjordanFix includes and forward declarations of domdec in...
2021-02-18 ejjordanUse array in gmx_domdec_zones_t
2021-02-18 Paul BauerFix doxygen in SYCL code
2021-02-18 Pascal MerzImplement velocity terms for virtual sites
2021-02-18 Andrey AlekseenkoSYCL NBNXM offload support
2021-02-18 Szilárd PállClean up box vector constants in do_force
2021-02-17 Pascal MerzIntroduce test checking freeze groups
2021-02-17 Artem ZhmurovUse GpuEventSynchronizer in NBNXM
2021-02-17 ejjordanRemove dead function declarations from forcerec
2021-02-17 ejjordanMore const in edsam functions
2021-02-17 ejjordanUse const ref to mtop in init_forcerec
2021-02-16 Szilárd PállSupport checking event status in GpuEventSynchronizer
2021-02-16 Andrey AlekseenkoFix clang-tidy-11 errors in NBNXM module, part 5
2021-02-16 Andrey AlekseenkoAdd support for Clang-CUDA 11.x and a post-merge CI...
2021-02-16 Joe JordanUse const ref to inputrec in do_force
2021-02-16 Pascal MerzIntroduce virtual sites test
2021-02-15 Andrey AlekseenkoRework SYCL CMake machinery to be compatible with hipSYCL
2021-02-15 Pascal MerzMake the restraint history const during force calculation
2021-02-15 Paul BauerFix clang-tidy-11 for topology module
2021-02-15 Sebastian KehlExpose mk_nbfp and make_ljpme_c6grid.
2021-02-12 Sebastian KehlFix leaked memory created in make_ljpme_c6grid.
2021-02-12 Andrey AlekseenkoAdd gmx::isPowerOfTwo function
2021-02-12 Mark AbrahamMerge branch release-2021 into master
2021-02-12 Paul BauerRemove unused function
2021-02-12 Mark AbrahamImprove CUDA codegen flags
2021-02-12 Pascal MerzMove virtual site calculation
2021-02-11 Joe JordanUse unique_ptr for tables
2021-02-11 Andrey AlekseenkoFix clang-tidy-11 errors in NBNXM module, part 3
2021-02-11 Pascal MerzDisable cos acceleration for non leap-frog code paths
2021-02-11 Andrey AlekseenkoSafer handling of empty cells in Grid::sortColumnsCpuGe...
2021-02-11 Artem ZhmurovFix MPI build
2021-02-10 Berk HessFix gmx_rmpbc_init with InteractionDefinitions
2021-02-10 Andrey AlekseenkoFix clang-tidy-11 errors in NBNXM module, part 4
2021-02-10 Andrey AlekseenkoFix clang-tidy-11 errors in NBNXM module, part 1
2021-02-09 Pascal MerzRe-fix md-vv Trotter kinetic energy and temperature
2021-02-09 Andrey AlekseenkoSYCL compilation and code compatibility changes
2021-02-09 Andrey AlekseenkoFix SYCL clearDeviceBufferAsync<float3>
2021-02-09 Artem ZhmurovName streams after locality
2021-02-09 Andrey AlekseenkoFix clang-tidy-11 errors in NBNXM module, part 2
2021-02-09 Pascal MerzMake temperature and pressure coupling enums enum classes
2021-02-09 Mark AbrahamRemove tree-reduce algorithm
2021-02-09 Andrey AlekseenkodispatchTemplatedFunction: dispatch by bool
2021-02-09 Artem ZhmurovFix clang-format
2021-02-09 Paul BauerFix range check bug in gmx covar
2021-02-08 Andrey AlekseenkoDisable FPE for SYCL builds
2021-02-08 Paul BauerFix clang-tidy-11 for trajectoryanalysis
2021-02-08 Paul BauerRemoved "math.h" included from clang-tidy
2021-02-08 Artem ZhmurovParametrize constraints test over the test systems
2021-02-07 Szilárd PállFix clang-tidy 11 warning in nbnxm ocl kernels
2021-02-07 Andrey AlekseenkoReplace custom implementations of GCD with std::gcd
2021-02-05 Mark AbrahamEnsure GoogleTest builds properly
2021-02-05 Paul BauerClean up domdec again after clang-tidy-11 fixes
2021-02-05 Paul BauerClang-tidy-11 fixes for utility
2021-02-05 Paul BauerFix clang-tidy-11 for domdec and utility
2021-02-05 Mark AbrahamRemove VMX SIMD
2021-02-04 Mark AbrahamRemove support for ARMv7 and NEON
2021-02-04 Paul BauerRemove no longer needed macro define
2021-02-04 Mark AbrahamFix refactoring issue
2021-02-04 Artem ZhmurovMake LJ combination rule enum into an enum class
2021-02-04 Mark AbrahamEnsure no UB in writing forces
2021-02-03 Mark AbrahamFix handling of tip4p in pdb2gmx
2021-02-03 Andrey AlekseenkoInitialize rollingPruningNumParts in init_plist
2021-02-03 Mark AbrahamFix test of not_null
2021-02-03 Paul BauerFix issues found by static analyzer
2021-02-03 Mark AbrahamRemove support for Intel classic compiler
2021-02-02 Andrey AlekseenkoRemove deprecated env. vars GMX_OCL_NB_ANA_EWALD etc
2021-02-02 Szilárd PállImprove DLB recommendation
2021-02-02 Artem ZhmurovUse make_unique instead of reset when private implement...
2021-02-02 Mark AbrahamRemove support for Fujitsu Sparc64 HPC-ACE
2021-02-01 Mark AbrahamRemove x86 MIC support
2021-02-01 Mark AbrahamAdd necessary include
2021-02-01 Mark AbrahamReplace gmx::Mutex with std::mutex
2021-02-01 Paul BauerFix clang-tidy
2021-01-31 Mark AbrahamRequire MPI 2.0
2021-01-29 Artem ZhmurovRmove dependency on Constraints object from compute_glo...
2021-01-29 Hubert SantuzAllow MdModules to access the topology during simulatio...
2021-01-29 Mark AbrahamRemove PrivateImplPointer in favour of std::unique_ptr
2021-01-29 Dmitry MorozovAdded functionality that allows MdModules to disable...
2021-01-29 Mark AbrahamMerge branch release-2021
2021-01-28 Alan GrayMove initiation of local CPU force H2D transfer to...
2021-01-28 Paul BauerFix formatting in random/seed.cpp
2021-01-27 Pascal MerzRemove constant acceleration groups
2021-01-27 Andrey AlekseenkoSYCL: fix typo in a test and clean-up non-standard...
2021-01-26 Szilárd PállChange default Ewald kernel to tabulated on NVIDIA...
2021-01-26 Mark AbrahamFix default for xpm2gmx tick-mark spacings
2021-01-26 Pascal MerzEnable grompp to read virtual_site1
2021-01-25 Mark AbrahamLog progress from gmx msd better
2021-01-22 Szilárd PállDisable CUDA textures also on NVIDIA Ampere A100
2021-01-21 Mark AbrahamEnsure residue name used by pdb2gmx matches rtp name
2021-01-21 Andrey AlekseenkoKeep the number of tMPI ranks consistent with the numbe...
2021-01-21 Szilárd PállMinor naming fix in OpenCL nbnxm kernels
2021-01-21 Mark AbrahamSuggest a workaround for pulling with -deffnm
2021-01-20 Mark AbrahamDescribe the configured precision correctly for mdrun
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