Avoid NMR restraints calls for MTS levels > 0
[alexxy/gromacs.git] / src /
2021-01-12 Berk HessAvoid NMR restraints calls for MTS levels > 0
2021-01-09 Andrey Alekseenkodensityfit: Fix typo in use of iterators
2021-01-08 Gilles GouaillardetARM_SVE: misc fixes
2021-01-07 Gilles Gouaillardetarm_sve: fix GMX_SIMD_HAVE_4NSIMD_UTIL_{FLOAT,DOUBLE...
2021-01-07 Paul BauerMerge branch release-2020 into merge-2020-into-2021
2021-01-07 Paul BauerWrite copyright output files as utf8
2021-01-05 Kevin BoydFix broken random seed generation.
2021-01-05 Kevin BoydFix broken random seed generation.
2021-01-05 Christian BlauFix copyright year
2021-01-01 Michael ShirtsExpanded ensemble changes.
2020-12-18 Alan GrayStage bonded kernel atomics through shared memory
2020-12-17 Mark AbrahamUpdate CI image to OneAPI 2021.1.1, add ICC tests.
2020-12-15 Mark AbrahamUpdate deprecation statuses
2020-12-14 Paul BauerFix pull group index handling
2020-12-14 Magnus LundborgFix incorrect AWH free-energy output with multiple...
2020-12-11 Pascal MerzRestrict force frame comparison for FEP tests
2020-12-11 Pascal MerzFix trx frame reading from modular simulator checkpoint...
2020-12-10 Berk HessA check for perturbed listed pairs beyond rlist
2020-12-09 Paul BauerFix indexing bug in electric field module
2020-12-09 Andrey AlekseenkoFix defining of EXCLUSION_FORCES in CUDA/OpenCL kernels
2020-12-09 Mark AbrahamFix compilation and tests with icc 19.1.2
2020-12-09 Pascal MerzFix and activate tests for kv-tree checkpoint functions
2020-12-09 Pascal MerzFix dump of checkpoint files
2020-12-07 Pascal MerzFix Nose-Hoover conserved energy
2020-12-05 Pascal MerzClarify checkpoint mismatch error, and enable in release
2020-12-04 Pascal MerzRelax simulator comparison tests
2020-12-02 Pascal MerzPrint energy conservation in modular simulator
2020-12-02 Pascal MerzFixes post submit broken by 05f02ab82
2020-12-02 Pascal MerzSeparate simulator comparison tests
2020-12-02 Pascal MerzFix error when using simulator test with pre-defined...
2020-12-02 Pascal MerzFix kinetic energy and temperatures reporting
2020-12-02 Pascal MerzModular simulator: Disable invalid code paths
2020-11-29 Paul BauerFix build on CentOS 7
2020-11-26 Berk HessFix pull fatal error message
2020-11-25 Paul BauerFix cyclecounters on x32
2020-11-25 Gilles GouaillardetFix frexp() for ARM SVE SIMD
2020-11-24 Mark AbrahamStop GoogleTest requiring ancient CMake minimum versions
2020-11-24 Erik LindahlFix frexp() for ARM neon SIMD.
2020-11-24 Paul BauerMerge branch 'origin/release-2020' into merge-2020...
2020-11-24 Paul BauerFix gmx h2order -d option
2020-11-24 Erik LindahlMake sure frexp() returns correct for argument 0.0
2020-11-24 Artem ZhmurovImprove handling of CUDA API errors
2020-11-23 Paul BauerFixes for Intel and container build fixes
2020-11-23 Magnus LundborgProperly check if there are perturbed constraints or...
2020-11-23 Artem ZhmurovMake corresponding device active before each TestDevice...
2020-11-23 Artem ZhmurovRemove coolquote that sounds offensive without context
2020-11-13 Gilles GouaillardetDetect ARM SVE Vector length if possible
2020-11-12 Paul BauerFix thread mpi linking for mdrun only build
2020-11-11 Paul BauerFix gmx do_dssp CHARMM support
2020-11-11 Szilárd PállFix gcc 9 "warning: ‘unused’ attribute ignored"
2020-11-11 Paul BauerFix segmentation fault in gmx pairdist
2020-11-11 Berk HessUpdate gmx msd documentation
2020-11-10 Andrey AlekseenkoFix "GMX_CUDA|OCL_NB_EWALD_TWINCUT is disabling twin...
2020-11-10 Szilárd PállGPU codepath cycle counting fixes
2020-11-10 Mark AbrahamAdd move operations to GpuHaloExchange
2020-11-10 Berk HessFix dHdl and foreign energy clearing at checkpointing
2020-11-10 Pascal MerzFix MTTK constant energy bugs
2020-11-09 Andrey AlekseenkoAdd SYCL implementation of LeapFrogGpu
2020-11-09 Andrey AlekseenkoFix intemittent MdrunIOTests segfault
2020-11-09 Artem ZhmurovRemove source file that is no longer in use
2020-11-09 Szilárd PállFix cycle counting in StatePropagatorDataGpu
2020-11-09 Berk HessMove implementation to cpp file
2020-11-09 Alan GrayUse dynamically allocated unique pointers for GPU halo...
2020-11-06 Andrey AlekseenkoSuggest environment variable to limit visible SYCL...
2020-11-06 Artem ZhmurovFix doxygen comments formattig in update.h
2020-11-05 Paul BauerAllow pdb2gmx to handle cyclic molecules
2020-11-05 Paul BauerAllow CUDA build tests to succeed without GPU
2020-11-05 Berk HessDisable MTS with SD integrator
2020-11-05 Magnus LundborgSet pbcatom_input in order to pass later checks
2020-11-05 Berk HessCopy position restraint parameters with MTS
2020-11-05 Mark AbrahamImprove issues with CUDA interacting with std flags
2020-11-04 Alan GrayAllow GPU update without GPU DD
2020-11-04 Mark AbrahamFix use of config.h in halo exchange tests
2020-11-04 Mark AbrahamRemove logging from hardware detection
2020-11-03 Alan GrayAdd more halo exchange unit test variations
2020-11-03 Szilárd PállAdd missing wallcycle_stop
2020-11-03 Alan GrayExtend halo exchange unit test to GPU codepath
2020-11-03 Gilles Gouaillardettiming: try to directly retrieve gmx_cycles_calibrate...
2020-11-03 Magnus LundborgRemove TODO regarding AWH cover threshold along lambda...
2020-11-03 Artem ZhmurovMake the message why GPU bondeds are not available...
2020-10-30 Paul BauerFix unused variable warnings
2020-10-30 Paul BauerAdd missing fix for Clang CUDA
2020-10-30 Paul BauerFix build issues with Clang CUDA
2020-10-30 Szilárd PállClang format
2020-10-30 Szilárd PállAdd fvec doxygen
2020-10-30 Szilárd PállFix AMD OpenCL float3 array optimization bug
2020-10-29 Paul BauerFix CUDA code issues
2020-10-29 Paul BauerDefault initialize pull datastructures
2020-10-28 Andrey AlekseenkoMake dispatchTemplatedFunction compatible with MSVC
2020-10-28 Berk HessCorrect AWH initial histogram size
2020-10-28 Gilles Gouaillardetoptions: add the eftCSV OptionFileType
2020-10-28 Andrey AlekseenkoAdd dispatchTemplatedFunction
2020-10-27 Paul BauerFix remaining clang tidy issues with OpenCL
2020-10-27 Paul BauerMix minor clang-tidy warning in double
2020-10-27 Szilárd PállFix clang-tidy v10 warnigns in OpenCL kernels
2020-10-27 M. Eric IrrgangClarify behavior of LegacyMdrunOptions.
2020-10-27 Artem ZhmurovRemove unused velocity scaling enum value
2020-10-26 Artem ZhmurovClear constraints RMSD values upon domains reset
2020-10-23 Roland SchulzFix warning with OneAPI compiler and AVX512
2020-10-22 Artem ZhmurovUse and properly initialize PRNG when hardware random...
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