Use ListOfLists in gmx_mtop_t and gmx_localtop_t
[alexxy/gromacs.git] / src / gromacs / domdec / domdec_topology.cpp
2019-12-16 Berk HessUse ListOfLists in gmx_mtop_t and gmx_localtop_t
2019-12-12 Paul BauerMerge branch 'origin/release-2020' into master
2019-11-30 Paul BauerMerge origin/release-2020 into master
2019-11-29 Mark AbrahamMerge branch release-2019 into release-2020
2019-11-21 Mark AbrahamMerge branch release-2020
2019-11-20 Paul BauerMerge 'origin/release-2019' into release-2020
2019-11-18 Berk HessFix intermolecular interactions with DD
2019-11-14 Berk HessSimplify t_forcerec destruction
2019-11-07 Paul BauerApply clang-format to source tree
2019-10-29 Paul BauerMerge branch 'release-2019' into master
2019-10-01 Berk HessUse gmx::Range in domdec
2019-10-01 Berk HessCompletely remove charge groups
2019-10-01 Berk HessSimplify DD exclusion counting
2019-09-27 Berk HessExtract gmx::Range
2019-09-25 Szilárd PállMerge remote-tracking branch 'origin/release-2019'
2019-09-24 Paul BauerMerge branch release-2019 into master
2019-09-19 Berk HessRemove bLocalCG from DD code
2019-09-19 Berk HessRemove obsolete make_exclusions_zone_cg()
2019-09-19 ejjordanRemove or update comments containing 'group scheme'
2019-09-04 Berk HessMove constraint and bonded filtering info into DDSystemInfo
2019-08-22 Mark AbrahamMerge branch release-2019
2019-08-20 Mark AbrahamApply clang-tidy-8 readability-uppercase-literal-suffix
2019-08-16 Mark AbrahamUpdate testing matrices and fix warnings
2019-08-01 Paul BauerMerge release-2019 into master
2019-07-11 Pascal MerzRemove dependence of compute_globals on t_state
2019-07-02 Kevin BoydRemove references to ecutsGROUP
2019-06-14 Paul BauerMerge branch release-2018 into release-2019
2019-04-18 Berk HessRemove charge groups from domdec and localtop
2019-04-17 Berk HessSimplify vsite PBC handling
2019-03-02 Mark AbrahamMerge branch release-2019
2019-02-20 Paul BauerMerge branch 'release-2019' into master
2019-02-11 Roland SchulzRemove EmptyArrayRef
2019-02-07 Roland SchulzRevert size to be unsigned for ArrayRef
2019-02-07 Roland SchulzAdd ssize and remove static_casts
2019-02-04 Roland SchulzReplace compat::make_unique with std::make_unique
2019-01-30 Mark AbrahamMerge remote branch release-2018 into release-2019
2019-01-23 Roland SchulzMerge release-2019 into master
2019-01-23 Roland SchulzMerge release-2018 into release-2019
2019-01-09 Paul BauerFix uncrustify complaining about files
2019-01-04 Paul BauerChange gmx_localtop_t to C++
2018-12-31 Paul BauerMerge branch release-2018 into release-2019
2018-12-17 Paul BauerMerge branch release-2018 into release-2019
2018-11-21 Paul BauerMerge branch release-2018 into release-2019
2018-11-20 Mark AbrahamMerge "Merge release-2019 into master"
2018-11-16 Roland SchulzMerge release-2019 into master
2018-11-01 Berk HessFix broken update groups
2018-10-26 Mark AbrahamMerge branch release-2018 into release-2019
2018-10-13 Viacheslav BolnykhUpdated name of intemolecular exclusions function
2018-10-12 Viacheslav BolnykhImplemented QM/MM workflow inside core GROMACS
2018-10-08 Berk HessEnable update groups
2018-10-08 Mark AbrahamImplement PaddedVector
2018-10-02 Berk HessUpdate DD cutoffs for update groups
2018-09-22 Berk HessRename DD constraint booleans
2018-09-21 Roland SchulzFix clang-tidy warnings for clang 7
2018-09-19 Berk HessConvert gmx_cmap_t to C++
2018-09-19 Berk HessConvert gmx_ffparams_t to C++
2018-09-18 Mark AbrahamSeparated partitioning and dlb code within domdec
2018-09-17 Berk HessChange pointers to InteractionList to references
2018-09-14 Berk HessChange gmx_moltype_t.ilist to InteractionLists
2018-09-13 Berk HessAdd C++ version of t_ilist
2018-09-12 Berk HessConvert vsite structs to C++
2018-09-12 Berk HessConvert DD gmx_reverse_top_t to C++
2018-09-11 Mark AbrahamImprove DD logging
2018-09-11 Pascal MerzAdded trivial const qualifiers
2018-08-29 Mark AbrahamMerge branch release-2018
2018-08-24 Mark AbrahamMerge branch release-2018
2018-08-20 Berk HessMake gmx_ga2la_t a proper class
2018-08-18 Roland Schulzreadability-implicit-bool-conversion 2/2
2018-08-18 Roland Schulzclang-tidy modernize
2018-08-06 Roland SchulzChange gmx_bool from int to bool
2018-07-16 Roland SchulzWarn for type mismatch for gmx printf like functions 1/3
2018-07-04 Roland SchulzMerge release-2018 into master
2018-07-01 Roland Schulzclang-tidy: readability-non-const-parameter (2/2)
2018-06-28 Berk HessRename atomGroups in gmx_domdec_t to atomGrouping
2018-06-28 Berk HessChange BlockRanges to class RangePartitioning
2018-06-13 Berk HessPartial conversion of gmx_domdec_t to C++
2018-05-25 Mark AbrahamClean up force.h and its use
2018-05-03 Mark AbrahamMerge branch release-2018
2018-04-16 Berk HessMove natoms_mol out of gmx_molblock_t
2018-04-13 Mark AbrahamMerge branch release-2018
2018-04-09 Berk HessConvert gmx_molblock_t to C++
2018-04-04 Pascal MerzMove checkNumberOfBondedInteractions
2018-04-03 Berk HessConvert gmx_mtop_t to C++
2018-03-28 Mark AbrahamMerge branch release-2018
2018-03-20 Mark AbrahamMerge branch release-2016 into release-2018
2018-03-06 Mark AbrahamMerge branch release-2018
2018-02-28 Mark AbrahamReorganized constraint code
2018-02-27 Aleksei IupinovMerge branch 'release-2018'
2018-02-16 Mark AbrahamMerge branch release-2016 into release-2018
2018-02-16 Mark AbrahamMerge branch release-2018 into master
2018-02-14 Berk HessRemove support for tpx version before 58/gmx4.0
2018-02-14 Mark AbrahamMerge branch release-2016 into release-2018
2018-02-09 Mark AbrahamMerge branch release-2018
2018-02-08 Mark AbrahamMerge branch release-2016 into release-2018
2018-02-08 Aleksei IupinovMerge branch 'release-2018' into master
2018-02-06 Aleksei IupinovRemove unnecessary includes from domdec.h
2018-01-24 Mark AbrahamRemove gmx_inline
2018-01-09 Mark AbrahamMerge branch release-2016 into release-2018
2017-12-22 Mark AbrahamMerge branch release-2016 into release-2018
2017-12-21 Mark AbrahamMerge branch release-5-1 into release-2016
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