BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2013-01-18	Szilard Pall	remove unnecessary cmake messages	commit \| commitdiff \| tree \| snapshot
2013-01-17	Mark Abraham	Gromacs install guide updates.	commit \| commitdiff \| tree \| snapshot
2013-01-17	Mark Abraham	Merge "Remove unnecessary ICC flags affecting performan...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Mark Abraham	Merge "improved CUDA kernel performance by pre-loading...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Christoph Junghans	Merge "Added note about make_edi and flooding in ED...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Christoph Junghans	Merge "use the compiler version provided by CMake ...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Roland Schulz	Merge "Merge branch 'release-4-5-patches' into release...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Szilárd Páll	Merge changes I930b316c,Iea4283e0,I103648f8 into releas...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Roland Schulz	Remove unnecessary ICC flags affecting performance	commit \| commitdiff \| tree \| snapshot
2013-01-17	Mark Abraham	BlueGene/Q installation notes	commit \| commitdiff \| tree \| snapshot
2013-01-17	Mark Abraham	Merge branch 'release-4-5-patches' into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-01-17	Christoph Junghans	Merge "note the reason for auto-disabling GPU support...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Mark Abraham	Merge "Added mdp option 'calc-lambda-neighbors'." into...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Roland Schulz	Merge "clarify wording of GPU driver-related notes...	commit \| commitdiff \| tree \| snapshot
2013-01-17	Mark Abraham	Fix trjconv -sub with .trr files	commit \| commitdiff \| tree \| snapshot
2013-01-17	Berk Hess	fixed SD+BD integration slowing down with OpenMP threads	commit \| commitdiff \| tree \| snapshot
2013-01-17	Roland Schulz	Run regressiontests from build	commit \| commitdiff \| tree \| snapshot
2013-01-17	Berk Hess	improved CUDA kernel performance by pre-loading cj	commit \| commitdiff \| tree \| snapshot
2013-01-17	Sander Pronk	Added mdp option 'calc-lambda-neighbors'.	commit \| commitdiff \| tree \| snapshot
2013-01-17	Sander Pronk	Fixes to free energy code, output & g_bar compatibility.	commit \| commitdiff \| tree \| snapshot
2013-01-17	Carsten Kutzner	Added note about make_edi and flooding in ED paragraph	commit \| commitdiff \| tree \| snapshot
2013-01-17	Szilárd Páll	use the compiler version provided by CMake >=2.8.9	commit \| commitdiff \| tree \| snapshot
2013-01-17	Szilárd Páll	note the reason for auto-disabling GPU support in CMake	commit \| commitdiff \| tree \| snapshot
2013-01-17	Szilárd Páll	clarify wording of GPU driver-related notes	commit \| commitdiff \| tree \| snapshot
2013-01-17	Mark Abraham	Finally move OpenMM to contrib	commit \| commitdiff \| tree \| snapshot
2013-01-17	Roland Schulz	Fix confusing gmx_header_config.h include	commit \| commitdiff \| tree \| snapshot
2013-01-17	Szilard Pall	don't use polling with new driver	commit \| commitdiff \| tree \| snapshot
2013-01-17	Christoph Junghans	clean up fortran name mangling	commit \| commitdiff \| tree \| snapshot
2013-01-17	Berk Hess	fixed nbnxn hybrid mode with OpenMP	commit \| commitdiff \| tree \| snapshot
2013-01-17	Berk Hess	made PME load balancing + DD DLB more efficient	commit \| commitdiff \| tree \| snapshot
2013-01-16	Carsten Kutzner	Made g_tune_pme work correctly again with thread-MPI...	commit \| commitdiff \| tree \| snapshot
2013-01-16	Roland Schulz	Don't cache ${FFTW}_HAVE_(SIMD\|AVX)	commit \| commitdiff \| tree \| snapshot
2013-01-16	Erik Lindahl	Fixed GB interactions for release-4-6	commit \| commitdiff \| tree \| snapshot
2013-01-16	Berk Hess	split off pick_nbnxn_resource from nbnxn_pick_nbnxn	commit \| commitdiff \| tree \| snapshot
2013-01-16	Mark Abraham	Quiet stderr output, particularly for multi-simulations	commit \| commitdiff \| tree \| snapshot
2013-01-16	Michael Shirts	fixes issues with pressure control and infrequent evalu...	commit \| commitdiff \| tree \| snapshot
2013-01-16	Christoph Junghans	Remove debug statment	commit \| commitdiff \| tree \| snapshot
2013-01-15	Roland Schulz	Fix missing replacement/typo	commit \| commitdiff \| tree \| snapshot
2013-01-15	Mark Abraham	Merge "Hid nbnxn kernel names behind a lookup function...	commit \| commitdiff \| tree \| snapshot
2013-01-15	Christoph Junghans	Merge "Added fatal error for constraints + L-BFGS minim...	commit \| commitdiff \| tree \| snapshot
2013-01-15	Christoph Junghans	Merge "disable OpenMP with all OS X gcc 4.2-based compi...	commit \| commitdiff \| tree \| snapshot
2013-01-15	Sander Pronk	Merge "Continuation of documentation for expanded ensem...	commit \| commitdiff \| tree \| snapshot
2013-01-15	Mark Abraham	Velocity-verlet integrators and v-rescale are broken	commit \| commitdiff \| tree \| snapshot
2013-01-15	Michael Shirts	Continuation of documentation for expanded ensemble.	commit \| commitdiff \| tree \| snapshot
2013-01-15	Szilárd Páll	disable OpenMP with all OS X gcc 4.2-based compilers	commit \| commitdiff \| tree \| snapshot
2013-01-14	Mark Abraham	Added fatal error for constraints + L-BFGS minimizer	commit \| commitdiff \| tree \| snapshot
2013-01-14	Mark Abraham	Hid nbnxn kernel names behind a lookup function	commit \| commitdiff \| tree \| snapshot
2013-01-14	Carsten Kutzner	Essential dynamics output file now in .xvg format	commit \| commitdiff \| tree \| snapshot
2013-01-14	David van der...	Merge "Fixing trjconv -sub" into release-4-5-patches	commit \| commitdiff \| tree \| snapshot
2013-01-14	David van der...	Merge "Noting that and why gmxdump -s -sys is broken...	commit \| commitdiff \| tree \| snapshot
2013-01-13	Roland Schulz	Merge "Fixes for md-vv and rerun" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-01-13	Roland Schulz	Merge "fixed resetting states with parallel Verlet...	commit \| commitdiff \| tree \| snapshot
2013-01-13	Mark Abraham	Updated code checks with distance restraints	commit \| commitdiff \| tree \| snapshot
2013-01-13	Mark Abraham	Fixing trjconv -sub	commit \| commitdiff \| tree \| snapshot
2013-01-13	Roland Schulz	Proper fix for copyrite cuda dependence	commit \| commitdiff \| tree \| snapshot
2013-01-13	Michael Shirts	Fixes for md-vv and rerun	commit \| commitdiff \| tree \| snapshot
2013-01-13	Berk Hess	fixed resetting states with parallel Verlet scheme	commit \| commitdiff \| tree \| snapshot
2013-01-13	Christoph Junghans	Merge "Remove unused bfunc.h." into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-01-13	Mark Abraham	Noting that and why gmxdump -s -sys is broken	commit \| commitdiff \| tree \| snapshot
2013-01-13	Christoph Junghans	Merge "Clarified some comments & warnings about thread...	commit \| commitdiff \| tree \| snapshot
2013-01-13	Christoph Junghans	Merge "Manage BlueGene/Q configuration" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-01-13	Christoph Junghans	Merge "Re-organize BlueGene toolchain files" into relea...	commit \| commitdiff \| tree \| snapshot
2013-01-13	Christoph Junghans	Merge "Changed defaults for building shared libraries...	commit \| commitdiff \| tree \| snapshot
2013-01-13	Mark Abraham	Clarified some comments & warnings about thread pinning	commit \| commitdiff \| tree \| snapshot
2013-01-13	Roland Schulz	Merge "prepared the nbnxn code for non-x86 SIMD" into...	commit \| commitdiff \| tree \| snapshot
2013-01-13	Mark Abraham	Manage BlueGene/Q configuration	commit \| commitdiff \| tree \| snapshot
2013-01-13	Mark Abraham	Re-organize BlueGene toolchain files	commit \| commitdiff \| tree \| snapshot
2013-01-13	Mark Abraham	Changed defaults for building shared libraries	commit \| commitdiff \| tree \| snapshot
2013-01-13	Mark Abraham	Merge "Added basic CPU topology information to cpuid...	commit \| commitdiff \| tree \| snapshot
2013-01-13	Teemu Murtola	Remove unused bfunc.h.	commit \| commitdiff \| tree \| snapshot
2013-01-12	Berk Hess	prepared the nbnxn code for non-x86 SIMD	commit \| commitdiff \| tree \| snapshot
2013-01-12	Christoph Junghans	Merge "Added missing export" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-01-11	Erik Lindahl	Merge "made SHAKE work again with particle decompostion...	commit \| commitdiff \| tree \| snapshot
2013-01-11	Roland Schulz	Merge "time the GPU force clearing async launch overhea...	commit \| commitdiff \| tree \| snapshot
2013-01-11	Christoph Junghans	Merge "console and log output improvements" into releas...	commit \| commitdiff \| tree \| snapshot
2013-01-11	Christoph Junghans	Merge "Fix CUDA being quiet and mark all CUDA_* as...	commit \| commitdiff \| tree \| snapshot
2013-01-11	Erik Lindahl	Added basic CPU topology information to cpuid code	commit \| commitdiff \| tree \| snapshot
2013-01-11	Roland Schulz	Merge release-4-5-patches into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-01-11	Berk Hess	made SHAKE work again with particle decompostion	commit \| commitdiff \| tree \| snapshot
2013-01-11	Erik Lindahl	Merge "fixed nbnxn no LJ comb.rule AVX256 PME kernel...	commit \| commitdiff \| tree \| snapshot
2013-01-11	Szilard Pall	time the GPU force clearing async launch overhead	commit \| commitdiff \| tree \| snapshot
2013-01-11	Szilard Pall	console and log output improvements	commit \| commitdiff \| tree \| snapshot
2013-01-11	Roland Schulz	Added missing export	commit \| commitdiff \| tree \| snapshot
2013-01-11	David van der...	Fixes #994 confusion in atomprop.	commit \| commitdiff \| tree \| snapshot
2013-01-11	Roland Schulz	Merge "Handle compiler flags more flexibly" into releas...	commit \| commitdiff \| tree \| snapshot
2013-01-11	Christoph Junghans	Merge "Remove incorrect assert added by 05f9a740" into...	commit \| commitdiff \| tree \| snapshot
2013-01-10	Berk Hess	fixed nbnxn no LJ comb.rule AVX256 PME kernel	commit \| commitdiff \| tree \| snapshot
2013-01-10	Erik Lindahl	Fixed flop-accounting for periodic improper dihedrals	commit \| commitdiff \| tree \| snapshot
2013-01-10	Mark Abraham	Merge "Revert default rlist/rvdw/rcoulomb to valid...	commit \| commitdiff \| tree \| snapshot
2013-01-10	Mark Abraham	Merge "fixed bug with Verlet + DD + bonded atom communi...	commit \| commitdiff \| tree \| snapshot
2013-01-10	Roland Schulz	Remove incorrect assert added by 05f9a740	commit \| commitdiff \| tree \| snapshot
2013-01-10	Roland Schulz	Handle compiler flags more flexibly	commit \| commitdiff \| tree \| snapshot
2013-01-10	Erik Lindahl	Disallow the use of Clang to compile AVX_128_FMA	commit \| commitdiff \| tree \| snapshot
2013-01-10	Roland Schulz	Merge "Move Windows shared/static options to later...	commit \| commitdiff \| tree \| snapshot
2013-01-10	Roland Schulz	Merge "Remove workaround" into release-4-6	commit \| commitdiff \| tree \| snapshot
2013-01-10	Berk Hess	fixed bug with Verlet + DD + bonded atom communication	commit \| commitdiff \| tree \| snapshot
2013-01-10	Roland Schulz	Move Windows shared/static options to later point	commit \| commitdiff \| tree \| snapshot
2013-01-10	Roland Schulz	Remove workaround	commit \| commitdiff \| tree \| snapshot
2013-01-10	Erik Lindahl	Remove broken g_dih tool	commit \| commitdiff \| tree \| snapshot
2013-01-10	Mark Abraham	Merge "Fixes SSE/AVX compilation under Windows" into...	commit \| commitdiff \| tree \| snapshot
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