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alexxy/gromacs.git
2021-01-22
Szilárd Páll
Disable CUDA textures also on NVIDIA Ampere A100
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2021-01-21
Mark Abraham
Ensure residue name used by pdb2gmx matches rtp name
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2021-01-21
Andrey Alekseenko
Keep the number of tMPI ranks consistent with the numbe...
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2021-01-21
Mark Abraham
Suggest a workaround for pulling with -deffnm
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2021-01-20
Paul Bauer
Use correct python interpreter cmake check
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2021-01-20
Mark Abraham
Describe the configured precision correctly for mdrun
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2021-01-20
Paul Bauer
NBLIB: Remove preprocessor macros
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2021-01-20
Paul Bauer
Fix TPR handling for older versions.
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2021-01-20
Paul Bauer
Fix checksumming code
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2021-01-20
Mark Abraham
Fix PaddedVector move constructor
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2021-01-20
Mark Abraham
Report hwloc 1.x deprecation only when found
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2021-01-19
Berk Hess
Change default MTS force group selection
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2021-01-19
Szilárd Páll
Disable CUDA textures on NVIDIA Volta
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2021-01-19
Mark Abraham
Deprecate mdrun -deffnm
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2021-01-19
Pascal Merz
Fix modular simulator log writing in fresh simulation...
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2021-01-19
Szilárd Páll
Add G. Gouaillardet to the list of contributors
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2021-01-12
Berk Hess
Avoid NMR restraints calls for MTS levels > 0
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2021-01-09
Andrey Alekseenko
densityfit: Fix typo in use of iterators
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2021-01-08
Gilles Gouaillardet
ARM_SVE: misc fixes
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2021-01-07
Paul Bauer
Add new GROMACS logo
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2021-01-07
Gilles Gouaillardet
arm_sve: fix GMX_SIMD_HAVE_4NSIMD_UTIL_{FLOAT,DOUBLE...
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2021-01-07
Paul Bauer
Merge branch release-2020 into merge-2020-into-2021
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2021-01-07
Paul Bauer
Write copyright output files as utf8
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2021-01-07
Christian Blau
Prepare for GROMACS 2020.6
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2021-01-06
Christian Blau
GROMACS version 2020.5
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2021-01-05
Szilárd Páll
Update src/regressiontests URLs to https
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2021-01-05
Kevin Boyd
Fix broken random seed generation.
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2021-01-05
Kevin Boyd
Fix broken random seed generation.
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2021-01-05
Christian Blau
Fix copyright year
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2021-01-01
Michael Shirts
Expanded ensemble changes.
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2020-12-31
Szilárd Páll
Bump version post-release to rc2
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2020-12-30
Szilárd Páll
GROMACS 2021-rc1 release candidate
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2020-12-23
Mark Abraham
Deprecate .pdo file reading
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2020-12-18
Alan Gray
Stage bonded kernel atomics through shared memory
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2020-12-17
Mark Abraham
Update CI image to OneAPI 2021.1.1, add ICC tests.
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2020-12-15
Mark Abraham
Update deprecation statuses
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2020-12-14
Paul Bauer
Fix pull group index handling
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2020-12-14
Magnus Lundborg
Fix incorrect AWH free-energy output with multiple...
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2020-12-13
Simon Christ
Correct signs of lj and coulomb forces
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2020-12-11
Pascal Merz
Restrict force frame comparison for FEP tests
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2020-12-11
Pascal Merz
Fix trx frame reading from modular simulator checkpoint...
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2020-12-10
Berk Hess
A check for perturbed listed pairs beyond rlist
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2020-12-09
Paul Bauer
Fix indexing bug in electric field module
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2020-12-09
Andrey Alekseenko
Fix defining of EXCLUSION_FORCES in CUDA/OpenCL kernels
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2020-12-09
Mark Abraham
Fix compilation and tests with icc 19.1.2
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2020-12-09
Pascal Merz
Fix and activate tests for kv-tree checkpoint functions
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2020-12-09
Pascal Merz
Fix dump of checkpoint files
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2020-12-07
Pascal Merz
Fix Nose-Hoover conserved energy
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2020-12-05
Pascal Merz
Clarify checkpoint mismatch error, and enable in release
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2020-12-04
Pascal Merz
Relax simulator comparison tests
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2020-12-02
Pascal Merz
Print energy conservation in modular simulator
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2020-12-02
Paul Bauer
Third GROMACS 2021 beta release
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2020-12-02
Pascal Merz
Fixes post submit broken by 05f02ab82
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2020-12-02
Pascal Merz
Separate simulator comparison tests
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2020-12-02
Pascal Merz
Fix error when using simulator test with pre-defined...
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2020-12-02
Pascal Merz
Fix kinetic energy and temperatures reporting
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2020-12-02
Pascal Merz
Modular simulator: Disable invalid code paths
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2020-11-30
Paul Bauer
Add tests for newer GCC versions
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2020-11-30
M. Eric Irrgang
Explicitly use xunit2 schema for pytest output.
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2020-11-29
M. Eric Irrgang
Improve accessibility of pytest documentation.
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2020-11-29
Paul Bauer
Fix build on CentOS 7
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2020-11-27
M. Eric Irrgang
Import setuptools early to suppress distutils warning.
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2020-11-26
Berk Hess
Fix pull fatal error message
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2020-11-25
Paul Bauer
Fix cyclecounters on x32
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2020-11-25
Paul Bauer
Fix error with links in docs
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2020-11-25
Gilles Gouaillardet
Fix frexp() for ARM SVE SIMD
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2020-11-24
Mark Abraham
Stop GoogleTest requiring ancient CMake minimum versions
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2020-11-24
Erik Lindahl
Fix frexp() for ARM neon SIMD.
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2020-11-24
Paul Bauer
Merge branch 'origin/release-2020' into merge-2020...
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2020-11-24
Paul Bauer
Fix gmx h2order -d option
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2020-11-24
Erik Lindahl
Make sure frexp() returns correct for argument 0.0
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2020-11-24
Artem Zhmurov
Improve handling of CUDA API errors
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2020-11-23
Paul Bauer
Fixes for Intel and container build fixes
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2020-11-23
Magnus Lundborg
Properly check if there are perturbed constraints or...
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2020-11-23
Artem Zhmurov
Make corresponding device active before each TestDevice...
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2020-11-23
M. Eric Irrgang
Look for the various possible names of the gromacs...
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2020-11-23
Artem Zhmurov
Remove coolquote that sounds offensive without context
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2020-11-17
Joe Jordan
Remove some extraneous compiler flags from nblib
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2020-11-13
Gilles Gouaillardet
Detect ARM SVE Vector length if possible
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2020-11-12
Paul Bauer
Fix thread mpi linking for mdrun only build
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2020-11-12
Paul Bauer
Restore correct dynamics linking behaviour
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2020-11-11
Paul Bauer
Fix gmx do_dssp CHARMM support
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2020-11-11
Szilárd Páll
Fix gcc 9 "warning: ‘unused’ attribute ignored"
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2020-11-11
Paul Bauer
Fix segmentation fault in gmx pairdist
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2020-11-11
Paul Bauer
Second GROMACS 2021 beta release
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2020-11-11
Berk Hess
Update gmx msd documentation
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2020-11-10
Andrey Alekseenko
Fix "GMX_CUDA|OCL_NB_EWALD_TWINCUT is disabling twin...
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2020-11-10
Paul Bauer
Disable failing NB-LIB listed forces tests
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2020-11-10
kanduri
NBLIB: Fix build warning from uninitialized array
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2020-11-10
Szilárd Páll
GPU codepath cycle counting fixes
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2020-11-10
Mark Abraham
Add move operations to GpuHaloExchange
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2020-11-10
Berk Hess
Fix dHdl and foreign energy clearing at checkpointing
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2020-11-10
Pascal Merz
Fix MTTK constant energy bugs
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2020-11-09
Andrey Alekseenko
Add SYCL implementation of LeapFrogGpu
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2020-11-09
Joe Jordan
Add backend for nblib listed forces API
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2020-11-09
Paul Bauer
Use images from GitLab docker repository
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2020-11-09
Andrey Alekseenko
Fix intemittent MdrunIOTests segfault
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2020-11-09
Artem Zhmurov
Remove source file that is no longer in use
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2020-11-09
Szilárd Páll
Fix cycle counting in StatePropagatorDataGpu
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2020-11-09
Berk Hess
Move implementation to cpp file
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