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Merge branch release-2016
2016-09-16
Berk Hess
Merge branch release-2016
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2016-09-16
Berk Hess
Made distance restraints work with threads and DD
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2016-09-13
Berk Hess
Moved expanded ensemble history to pointer in t_state
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2016-09-13
Berk Hess
Change ED and swapstate to pointers in t_state
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2016-09-12
Berk Hess
Add const to thread-MPI functions
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2016-09-10
Berk Hess
Remove continuation from convert_tpr
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2016-09-06
Berk Hess
Fix bug with conjugate-gradient and OpenMP
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2016-09-06
Berk Hess
Consolidate MD algorithm atom setup
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2016-09-05
Berk Hess
Re-enable flexible constraints with DD
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2016-09-04
Berk Hess
Merge branch release-2016
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2016-09-03
Berk Hess
Clean up PME flags variable use
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2016-09-02
Berk Hess
Merge branch release-5-1 into release-2016
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2016-09-02
Berk Hess
Fix Parrinello-Rahman with nstpcouple>1
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2016-08-30
Berk Hess
Make virial reproducible
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2016-08-27
Berk Hess
Reduce rounding errors in SETTLE
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2016-08-24
Berk Hess
Fix Ewald surface+3DC corrections
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2016-08-24
Berk Hess
Merge branch release-5-1 into release-2016
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2016-08-23
Berk Hess
Remove variable precision gro writing
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2016-08-17
Berk Hess
Fixed opening of wall table files
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2016-08-15
Berk Hess
Reduce FE pair-list memory usage
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2016-08-10
Berk Hess
Fix deadlock with thread-MPI
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2016-08-09
Berk Hess
Fix twin-cutoff for GPU LJ pot-switch
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2016-07-07
Berk Hess
Relax pull PBC check
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2016-07-05
Berk Hess
Add checks for too much memory in g_nmeig
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2016-07-03
Berk Hess
Add grompp check for pull group
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2016-06-28
Berk Hess
Properly reset CUDA application clocks
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2016-06-27
Berk Hess
Use sysconf(_SC_NPROCESSORS_ONLN)
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2016-06-26
Berk Hess
Fix vsite bug with MPI+OpenMP
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2016-06-24
Berk Hess
Fix Verlet buffer calculation with nstlist=1
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2016-06-23
Berk Hess
More accurate GPU list splitting
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2016-06-22
Berk Hess
Updated OpenCLTODOList.txt
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2016-06-22
Berk Hess
Add nbnxn pair-list rebalancing
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2016-06-22
Berk Hess
Remove OpenMP overhead at high parallelization
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2016-06-22
Berk Hess
Correct GPU pair estimate for list splitting
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2016-06-21
Berk Hess
Fix bug with fbposres+MPI+OpenMP
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2016-06-20
Berk Hess
Increased tpx_incompatible_version to 30
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2016-06-19
Berk Hess
Remove warnings on checkpoint mismatch
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2016-06-17
Berk Hess
Remove std::thread::hardware_concurrency()
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2016-06-14
Berk Hess
Fix OpenCL error with empty domains
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2016-06-13
Berk Hess
Handle constraint errors with EM
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2016-06-07
Berk Hess
Fix data race in hwinfo with thread-MPI
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2016-06-03
Berk Hess
Handle partially frozen and constrained atoms
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2016-05-31
Berk Hess
Reposition nbnxn filler particles
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2016-05-31
Berk Hess
Avoid numerical overflow with overlapping atoms
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2016-05-31
Berk Hess
Add check for finite energies
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2016-05-30
Berk Hess
Add grompp check for unbound atoms
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2016-05-23
Berk Hess
Fix bug in v-rescale thermostat & replica exchange
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2016-05-10
Berk Hess
Optimized the vsite threading
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2016-05-10
Berk Hess
Fix CUDA shmem bug
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2016-05-10
Berk Hess
Support cmap with QMMM
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2016-05-08
Berk Hess
Update mdrun termination info
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2016-05-06
Berk Hess
OpenMP parallelization for pull
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2016-04-20
Berk Hess
Fix pull legend with external potential
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2016-04-19
Berk Hess
Allow rcoulomb>rvdw with PME
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2016-04-19
Berk Hess
Broadcast pull external potential provider string
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2016-04-19
Berk Hess
Fix gmx hbond group overlap check
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2016-04-14
Berk Hess
Add QMMM checks
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2016-04-03
Berk Hess
Correct nrdf for 1D/2D systems
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2016-03-31
Berk Hess
Fix includes in readpull.cpp
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2016-03-31
Berk Hess
Add option for external pull potential
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2016-03-30
Berk Hess
Correct mdrun tMPI (non-)parallel error message
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2016-03-26
Berk Hess
Add real/SIMD template for LJ-14 pairs
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2016-03-22
Berk Hess
Avoid assertion failure in pme_loadbal_do
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2016-03-22
Berk Hess
Make gmx vanhove work without PBC
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2016-03-22
Berk Hess
LJ combination rule kernels for CUDA
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2016-03-21
Berk Hess
Moved pull initialization back to mdrunner
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2016-03-18
Berk Hess
Fix non-normalization of FFT autocorr
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2016-03-14
Berk Hess
Remove restriction on dihdraltypes order
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2016-03-12
Berk Hess
Split off Fermi kernel from CUDA kernel
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2016-03-09
Berk Hess
Fix Ewald 3DC dipole with Verlet scheme
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2016-03-04
Berk Hess
Converted csettle() to use real/SimdReal template
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2016-03-03
Berk Hess
Use SIMD transpose scatter in bondeds
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2016-03-03
Berk Hess
Use rvec4 for listed force buffer
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2016-02-27
Berk Hess
Remove epsfac from GPU kernel inner-loops
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2016-02-27
Berk Hess
Minor code reordering in GPU kernels
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2016-02-26
Berk Hess
Fix compilation with Simd4Float, without Simd4Double
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2016-02-19
Berk Hess
Fix excessive list splitting
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2016-02-17
Berk Hess
Renamed nbnxn static const ints
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2016-02-11
Berk Hess
Add SIMD version of pbc_dx_aiuc
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2016-02-09
Berk Hess
Replaced nbnxn search+grid simd macros
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2016-02-07
Berk Hess
Fix incorrect cmap parsing
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2016-02-05
Berk Hess
Fix incorrect cmap parsing
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2016-02-03
Berk Hess
Replaced literals in nbnxn lists by ints
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2016-02-03
Berk Hess
Fix mdrun removing Verlet buffer with EM
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2016-02-03
Berk Hess
Fix SETTLE error handling
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2016-01-29
Berk Hess
Added documentation for pme grid indexing
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2016-01-29
Berk Hess
Fix TPI ignoring PME mesh contributions.
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2016-01-29
Berk Hess
Update -ntomp_pme -npme check
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2016-01-29
Berk Hess
Add check for double perturbation
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2016-01-29
Berk Hess
Fix LINCS triangle constraint thread issue
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2016-01-28
Berk Hess
Update pair-list buffer manual
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2016-01-24
Berk Hess
Fix exact continuation from non-energy steps
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2016-01-24
Berk Hess
Fix energy file continuation with md-vv
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2016-01-24
Berk Hess
Fix energy average with continuation
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2016-01-08
Berk Hess
Fix PME load balancing skipping a setup
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2015-12-29
Berk Hess
Correct vector check of gmx check
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2015-12-27
Berk Hess
Reorganized domdec initialization
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2015-12-20
Berk Hess
Merge release-5-1 into master
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2015-12-19
Berk Hess
Bring performance estimation up to date
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2015-12-17
Berk Hess
Removed topology pointers from DD struct
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