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2014-03-05	Berk Hess	Buffer estimate now works with rvd-switch=0	commit \| commitdiff \| tree
2014-03-05	Roland Schulz	Check zlib can actually be linked	commit \| commitdiff \| tree
2014-03-05	Roland Schulz	Avoid segfault when comparing tpr	commit \| commitdiff \| tree
2014-03-04	Mark Abraham	Add enum and docs for using tpx_version	commit \| commitdiff \| tree
2014-03-01	Teemu Murtola	Move default library path search to program context	commit \| commitdiff \| tree
2014-03-01	Christoph Junghans	switch ld_seed from int to gmx_int64_t	commit \| commitdiff \| tree
2014-03-01	Szilard Pall	Added CUDA LJ-PME nbnxn kernels	commit \| commitdiff \| tree
2014-02-27	Teemu Murtola	Improve support for data sets in C++ tools	commit \| commitdiff \| tree
2014-02-27	Szilard Pall	CUDA kernels for switched LJ	commit \| commitdiff \| tree
2014-02-27	Teemu Murtola	Improve floating point comparisons in unit tests	commit \| commitdiff \| tree
2014-02-26	Berk Hess	Free-energy now works with the Verlet scheme	commit \| commitdiff \| tree
2014-02-26	Alexey Shvetsov	Fix -Wmaybe-uninitialized warnings in some files	commit \| commitdiff \| tree
2014-02-26	Teemu Murtola	Misc. Doxygen build system improvements	commit \| commitdiff \| tree
2014-02-26	Erik Lindahl	Added message to warn that group kernels are deprecated.	commit \| commitdiff \| tree
2014-02-26	Michael Shirts	Updating and improving Andersen thermostat documentation	commit \| commitdiff \| tree
2014-02-26	Roland Schulz	ICC aliasing optimization flags	commit \| commitdiff \| tree
2014-02-26	Roland Schulz	Replace all mdrun rngs with cycle based rng	commit \| commitdiff \| tree
2014-02-26	Mark Abraham	Add ThreadSanitizer build type	commit \| commitdiff \| tree
2014-02-25	Berk Hess	Fixes seperate PME nodes without LJ-PME	commit \| commitdiff \| tree
2014-02-24	Berk Hess	Fixed bug with LJ pot-switch in 4xN kernels	commit \| commitdiff \| tree
2014-02-24	Mark Abraham	Suppress icc warning for Boost 1.55 use of #pragma...	commit \| commitdiff \| tree
2014-02-23	Rossen Apostolov	Removed deprecated Encad FF.	commit \| commitdiff \| tree
2014-02-21	Roland Schulz	Fix load_lj_pair_params2 for MIC	commit \| commitdiff \| tree
2014-02-21	Roland Schulz	Updated Boost to latest 1.55.0	commit \| commitdiff \| tree
2014-02-21	Roland Schulz	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2014-02-20	Mark Abraham	Remove particle decomposition	commit \| commitdiff \| tree
2014-02-20	Christoph Junghans	added gmx_is_{single,double}_precision	commit \| commitdiff \| tree
2014-02-20	Roland Schulz	Fix aligned store to unaligned memory	commit \| commitdiff \| tree
2014-02-20	Mark Abraham	avoid mdrun crash when rdtscp is not supported	commit \| commitdiff \| tree
2014-02-20	Mark Abraham	Add integration tests for replica exchange	commit \| commitdiff \| tree
2014-02-20	Roland Schulz	Fix Reference Build	commit \| commitdiff \| tree
2014-02-20	Teemu Murtola	Add documentation for using Doxygen	commit \| commitdiff \| tree
2014-02-19	Mark Abraham	Make some variable names less cryptic	commit \| commitdiff \| tree
2014-02-18	Mark Abraham	Fix harmless bug with combination of group and twin...	commit \| commitdiff \| tree
2014-02-17	Roland Schulz	Enable more warnings	commit \| commitdiff \| tree
2014-02-16	Carsten Kutzner	Small enhancement of computational electrophysiology...	commit \| commitdiff \| tree
2014-02-16	Teemu Murtola	Improve man page formatting slightly	commit \| commitdiff \| tree
2014-02-16	Teemu Murtola	Fix default enum values in help output	commit \| commitdiff \| tree
2014-02-13	Magnus Lundborg	Removed option to use OpenMP with the TNG library.	commit \| commitdiff \| tree
2014-02-12	Mark Abraham	Re-fix compiler warnings with scanner.cpp	commit \| commitdiff \| tree
2014-02-11	Mark Abraham	Split genbox into 'solvate' and 'insert-molecules'	commit \| commitdiff \| tree
2014-02-11	David van der Spoel	Fixed another vmdio issue.	commit \| commitdiff \| tree
2014-02-11	Erik Lindahl	First part of commit for redesigned SIMD module - namechanges.	commit \| commitdiff \| tree
2014-02-11	Magnus Lundborg	Added information about how to cite the TNG paper.	commit \| commitdiff \| tree
2014-02-09	Mark Abraham	Move orientation restraints checks inside init function	commit \| commitdiff \| tree
2014-02-09	Teemu Murtola	Refactor new help formatting implementation	commit \| commitdiff \| tree
2014-02-08	Mark Abraham	Clean up .log file dump of inputrec	commit \| commitdiff \| tree
2014-02-08	Mark Abraham	Issue fatal errors rather than use broken shell code	commit \| commitdiff \| tree
2014-02-08	Teemu Murtola	Fix & update docs for GMX_TEST_OPTIONS	commit \| commitdiff \| tree
2014-02-07	Mark Abraham	Initialize inputrec better in genbox	commit \| commitdiff \| tree
2014-02-06	Teemu Murtola	Fix build of share/template when installed	commit \| commitdiff \| tree
2014-02-06	Michael Shirts	EE dhdl header should not specify one lambda	commit \| commitdiff \| tree
2014-02-06	Mark Abraham	Remove antiquated and unused gmxpar.tex documentation	commit \| commitdiff \| tree
2014-02-06	Roland Schulz	Use random seeds by default	commit \| commitdiff \| tree
2014-02-05	Mark Abraham	Update description of genrestr	commit \| commitdiff \| tree
2014-02-04	Roland Schulz	Fix and simplify rpath	commit \| commitdiff \| tree
2014-02-03	Mark Abraham	Clean up genbox and associated code	commit \| commitdiff \| tree
2014-02-03	Teemu Murtola	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2014-02-03	Teemu Murtola	Optimize Doxygen build	commit \| commitdiff \| tree
2014-02-03	Mark Abraham	Improved wallcycle reporting	commit \| commitdiff \| tree
2014-02-02	Teemu Murtola	Fix segfault in 'gmx -h'	commit \| commitdiff \| tree
2014-02-02	Teemu Murtola	Get rid of src/programs/gmx/	commit \| commitdiff \| tree
2014-02-02	Teemu Murtola	Simplify Options::setDescription() usage	commit \| commitdiff \| tree
2014-02-01	Teemu Murtola	Fix some issues reported by 'make depcheck doccheck'	commit \| commitdiff \| tree
2014-01-31	Teemu Murtola	Overview docs for unit testing	commit \| commitdiff \| tree
2014-01-30	Roland Schulz	Add cmake option for Reference kernel	commit \| commitdiff \| tree
2014-01-30	Mark Abraham	Minor improvements to ewald_LRcorrection	commit \| commitdiff \| tree
2014-01-30	Berk Hess	Made reference SIMD work again	commit \| commitdiff \| tree
2014-01-30	Teemu Murtola	Fix shell completions of ffMULT options	commit \| commitdiff \| tree
2014-01-30	Teemu Murtola	Refactor ProgramInfo use	commit \| commitdiff \| tree
2014-01-30	Rossen Apostolov	Removed ions.itp from GMX/share/top directory.	commit \| commitdiff \| tree
2014-01-30	Teemu Murtola	Move command listing to 'gmx help commands'	commit \| commitdiff \| tree
2014-01-30	Roland Schulz	Allocate memory for MD5 on heap	commit \| commitdiff \| tree
2014-01-29	Mark Abraham	Improved dependencies on maths includes	commit \| commitdiff \| tree
2014-01-29	Teemu Murtola	Fixes to filename shell completions	commit \| commitdiff \| tree
2014-01-29	Roland Schulz	Uncrustify all files	commit \| commitdiff \| tree
2014-01-29	Berk Hess	Automated Verlet rlist for NVE simulations	commit \| commitdiff \| tree
2014-01-29	Teemu Murtola	Merge "Merge branch 'release-4-6'"	commit \| commitdiff \| tree
2014-01-28	David van der Spoel	Moved random number generator code to separate dir.	commit \| commitdiff \| tree
2014-01-28	Carsten Kutzner	Allow for "computational electrophysiology" simulations...	commit \| commitdiff \| tree
2014-01-28	Christoph Junghans	cmake: added FFTW_URL to allow easy offline build	commit \| commitdiff \| tree
2014-01-28	Rossen Apostolov	Bump own fftw build to version 3.3.3	commit \| commitdiff \| tree
2014-01-28	Mark Abraham	Remove "gmx trjconv -app"	commit \| commitdiff \| tree
2014-01-28	Teemu Murtola	Shell completion export from the wrapper binary	commit \| commitdiff \| tree
2014-01-28	Mark Abraham	Unify logic for timing counts	commit \| commitdiff \| tree
2014-01-28	Szilárd Páll	clarified OpenMP-related things in mdrun help/man	commit \| commitdiff \| tree
2014-01-28	Teemu Murtola	Extend version information output	commit \| commitdiff \| tree
2014-01-27	Teemu Murtola	Simplify ProgramInfo	commit \| commitdiff \| tree
2014-01-23	Mark Abraham	Break dependency of fileio on tools	commit \| commitdiff \| tree
2014-01-22	Mark Abraham	Update libxml2 CMake detection	commit \| commitdiff \| tree
2014-01-21	Rossen Apostolov	Fixed wrong message when building own FFTW.	commit \| commitdiff \| tree
2014-01-21	Roland Schulz	Fix race conditions	commit \| commitdiff \| tree
2014-01-21	Mark Abraham	Ensure we don't #define constants before system headers	commit \| commitdiff \| tree
2014-01-21	Justin Lemkul	Added ASPP and GLUP to residuetypes.dat.	commit \| commitdiff \| tree
2014-01-21	Teemu Murtola	Improve file name option help	commit \| commitdiff \| tree
2014-01-20	Teemu Murtola	Rewrite help output from Options	commit \| commitdiff \| tree
2014-01-20	Mark Abraham	Fix .gitignore of some files	commit \| commitdiff \| tree
2014-01-19	Teemu Murtola	Fix installed headers	commit \| commitdiff \| tree
2014-01-19	Teemu Murtola	Move md5.* to fileio/	commit \| commitdiff \| tree
2014-01-19	Teemu Murtola	Move strdb.* to src/gromacs/fileio/	commit \| commitdiff \| tree
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