BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	David van der Spoel <spoel@xray.bmc.uu.se>
	Sun, 19 Jan 2014 07:51:06 +0000 (08:51 +0100)
committer	Gerrit Code Review <gerrit@gerrit.gromacs.org>
	Tue, 28 Jan 2014 21:43:40 +0000 (22:43 +0100)
commit	0a4f0948aa2b8a1f2132603836f1056bf0d17255
tree	6c7877697ff969073ae3cd4d140f3b0f420cf997	tree \| snapshot
parent	ba7db18082bda202aabfa29418b6d7ac74a7dd7b	commit \| diff

Moved random number generator code to separate dir.

GROMACS sports two random number generators for historical
reason. The oldest one is phased out in this patch.
Changing the random number
generator means that e.g. replica exchange simulations will
not be reproducible (if they ever were in practice).

Change-Id: If24f1019fba9b9412713b5fe04b5c0a8a7638468

42 files changed:

src/gromacs/CMakeLists.txt		diff \| blob \| history
src/gromacs/gmxana/gmx_cluster.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dipoles.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dyndom.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genbox.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_genconf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genion.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmens.c		diff \| blob \| history
src/gromacs/gmxana/gmx_nmtraj.c		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_wham.cpp		diff \| blob \| history
src/gromacs/gmxana/nrama.c		diff \| blob \| history
src/gromacs/gmxana/nsfactor.c		diff \| blob \| history
src/gromacs/gmxana/sortwater.c	[moved from src/gromacs/gmxlib/sortwater.c with 97% similarity]	diff \| blob \| history
src/gromacs/gmxana/sortwater.h	[moved from src/gromacs/legacyheaders/sortwater.h with 94% similarity]	diff \| blob \| history
src/gromacs/gmxlib/checkpoint.c		diff \| blob \| history
src/gromacs/gmxlib/copyrite.cpp		diff \| blob \| history
src/gromacs/gmxlib/rando.c	[deleted file]	blob \| history
src/gromacs/gmxpreprocess/gen_maxwell_velocities.c	[moved from src/gromacs/gmxlib/random.c with 93% similarity]	diff \| blob \| history
src/gromacs/gmxpreprocess/gen_maxwell_velocities.h	[moved from src/gromacs/legacyheaders/random.h with 74% similarity]	diff \| blob \| history
src/gromacs/gmxpreprocess/grompp.c		diff \| blob \| history
src/gromacs/gmxpreprocess/nm2type.c		diff \| blob \| history
src/gromacs/gmxpreprocess/x2top.c		diff \| blob \| history
src/gromacs/legacyheaders/update.h		diff \| blob \| history
src/gromacs/mdlib/coupling.c		diff \| blob \| history
src/gromacs/mdlib/domdec_top.c		diff \| blob \| history
src/gromacs/mdlib/expanded.c		diff \| blob \| history
src/gromacs/mdlib/init.c		diff \| blob \| history
src/gromacs/mdlib/minimize.c		diff \| blob \| history
src/gromacs/mdlib/partdec.c		diff \| blob \| history
src/gromacs/mdlib/sim_util.c		diff \| blob \| history
src/gromacs/mdlib/tpi.c		diff \| blob \| history
src/gromacs/mdlib/update.c		diff \| blob \| history
src/gromacs/random/CMakeLists.txt	[new file with mode: 0644]	blob
src/gromacs/random/random.c	[moved from src/gromacs/gmxlib/gmx_random.c with 99% similarity]	diff \| blob \| history
src/gromacs/random/random.h	[moved from src/gromacs/legacyheaders/gmx_random.h with 99% similarity]	diff \| blob \| history
src/gromacs/random/random_gausstable.h	[moved from src/gromacs/gmxlib/gmx_random_gausstable.h with 99% similarity]	diff \| blob \| history
src/gromacs/selection/tests/nbsearch.cpp		diff \| blob \| history
src/gromacs/statistics/statistics_test.c		diff \| blob \| history
src/gromacs/tools/convert_tpr.c		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/freevolume.cpp		diff \| blob \| history
src/programs/mdrun/repl_ex.c		diff \| blob \| history

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