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2019-03-06	Mark Abraham	Revert "Eliminate mdlib/mdrun.h"	commit \| commitdiff \| tree
2019-03-06	Mark Abraham	Eliminate mdlib/mdrun.h	commit \| commitdiff \| tree
2019-03-06	Mark Abraham	Minor modernization in gmx_dump	commit \| commitdiff \| tree
2019-03-05	Berk Hess	Turn nbnxn_grid_t into a class	commit \| commitdiff \| tree
2019-03-02	Szilárd Páll	Encapsulate force output setup in do_force_*	commit \| commitdiff \| tree
2019-03-02	Mark Abraham	Merge branch release-2019	commit \| commitdiff \| tree
2019-03-02	Mark Abraham	Remove defunct mdrun options	commit \| commitdiff \| tree
2019-02-27	Jukka Maatta	Make OpenCL dummyKernel to require a input parameter	commit \| commitdiff \| tree
2019-02-26	Mark Abraham	Add new line to trjconv notice to users	commit \| commitdiff \| tree
2019-02-25	Prashanth Kanduri	Moving do_pbc_mtop(...) functions to pbcutils from...	commit \| commitdiff \| tree
2019-02-25	Paul Bauer	Refactor ExclusionBlocks	commit \| commitdiff \| tree
2019-02-25	Mark Abraham	De-duplicate gmx_tmpnam and gmx_fopen_temporary	commit \| commitdiff \| tree
2019-02-23	Berk Hess	Move all nbnxm pruning details into module	commit \| commitdiff \| tree
2019-02-23	Berk Hess	Hide internals of nbnxm parlist	commit \| commitdiff \| tree
2019-02-22	Paul Bauer	Add tests for ExclusionBlocks	commit \| commitdiff \| tree
2019-02-21	Paul Bauer	Reorganize release notes	commit \| commitdiff \| tree
2019-02-21	Berk Hess	Minor nbnxm cleanup	commit \| commitdiff \| tree
2019-02-21	Berk Hess	Clean up nbnxm enums	commit \| commitdiff \| tree
2019-02-21	Artem Zhmurov	Test for LINCS and SHAKE constraints.	commit \| commitdiff \| tree
2019-02-21	Berk Hess	Simplify make_pairlist() call signature	commit \| commitdiff \| tree
2019-02-20	Paul Bauer	Fix release notes formatting	commit \| commitdiff \| tree
2019-02-17	Szilárd Páll	Improve GPU target compatibility error message	commit \| commitdiff \| tree
2019-02-17	Berk Hess	Use enum class for nbnxm locality	commit \| commitdiff \| tree
2019-02-17	Berk Hess	Extract nbnxm grid.h and pairlistwork.h	commit \| commitdiff \| tree
2019-02-17	Berk Hess	Fix compiler warnings	commit \| commitdiff \| tree
2019-02-17	Berk Hess	Move nbnxm details from sim_util.cpp to module	commit \| commitdiff \| tree
2019-02-16	Berk Hess	Move nbnxn files to nbnxm directory	commit \| commitdiff \| tree
2019-02-15	Szilárd Páll	Extend GpuEventSynchronizer to allow on-device sync	commit \| commitdiff \| tree
2019-02-15	Semen Yesylevskyy	Fixed misleading wording for membed option.	commit \| commitdiff \| tree
2019-02-15	Semen Yesylevskyy	Add new suggested external trajectory analysis tool	commit \| commitdiff \| tree
2019-02-15	Paul Bauer	Fix memory issues in preprocess	commit \| commitdiff \| tree
2019-02-15	Paul Bauer	Refactor vsite topology	commit \| commitdiff \| tree
2019-02-15	Paul Bauer	Fix tune_pme	commit \| commitdiff \| tree
2019-02-13	Mark Abraham	Improved electric-field docs	commit \| commitdiff \| tree
2019-02-13	Szilárd Páll	Disable instruction fusion on Power8	commit \| commitdiff \| tree
2019-02-13	Mark Abraham	Reduce coupling to paddedvector.h	commit \| commitdiff \| tree
2019-02-13	Paul Bauer	Move simulated tempering default setting	commit \| commitdiff \| tree
2019-02-12	Mark Abraham	Quiet clang warning	commit \| commitdiff \| tree
2019-02-12	Paul Bauer	Refactor t_restp	commit \| commitdiff \| tree
2019-02-11	Christian Blau	view on MultiDimArray	commit \| commitdiff \| tree
2019-02-11	Paul Bauer	Refactor t_hack to MoleculePatches	commit \| commitdiff \| tree
2019-02-11	Paul Bauer	Fix bug in residue type reading	commit \| commitdiff \| tree
2019-02-09	Berk Hess	Disallow rerun with perturbed masses or constraints	commit \| commitdiff \| tree
2019-02-08	Mark Abraham	Fix Intel compiler warning	commit \| commitdiff \| tree
2019-02-08	David van der Spoel	Increase tolerance in Angle test.	commit \| commitdiff \| tree
2019-02-08	Thomas Ullmann	separated .rst documentation of dihedral PCA and hydrogen...	commit \| commitdiff \| tree
2019-02-07	Christian Blau	mdspan - add bracket operator slicing	commit \| commitdiff \| tree
2019-02-07	Roland Schulz	Revert size to be unsigned for ArrayRef	commit \| commitdiff \| tree
2019-02-06	Paul Bauer	Refactor t_hackblock	commit \| commitdiff \| tree
2019-02-06	Berk Hess	Fix segfault with EM, DD and group scheme	commit \| commitdiff \| tree
2019-02-04	Roland Schulz	Rename all source files from - to _ for consistency.	commit \| commitdiff \| tree
2019-02-04	Roland Schulz	Fix cmake policy warning	commit \| commitdiff \| tree
2019-01-30	Mark Abraham	Merge remote branch release-2018 into release-2019	commit \| commitdiff \| tree
2019-01-30	Mark Abraham	Fix release notes issue links	commit \| commitdiff \| tree
2019-01-30	Mark Abraham	Fix release notes issue links	commit \| commitdiff \| tree
2019-01-28	Roland Schulz	Resolve C++14 TODOs	commit \| commitdiff \| tree
2019-01-28	Mark Abraham	Stop trying to check nvcc on Windows	commit \| commitdiff \| tree
2019-01-28	Mark Abraham	Bump CUDA requirement to 9.0	commit \| commitdiff \| tree
2019-01-26	Roland Schulz	Fix clang warning	commit \| commitdiff \| tree
2019-01-25	Roland Schulz	Require C++14	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Require clang 3.6	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Fix post-submit build	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Bump required gcc compiler to 5.1	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Use native cmake C++11 support	commit \| commitdiff \| tree
2019-01-24	Paul Bauer	Change gcov to run on bs-mic	commit \| commitdiff \| tree
2019-01-24	Paul Bauer	Change gcov to run on bs-mic	commit \| commitdiff \| tree
2019-01-23	Roland Schulz	Rename gmx Variant to Any	commit \| commitdiff \| tree
2019-01-23	Christian Blau	Multidimensional data in canonical layout.	commit \| commitdiff \| tree
2019-01-23	Paul Bauer	Introduce string comparison function	commit \| commitdiff \| tree
2019-01-22	Berk Hess	Add utility method to NbnxnPairlistGpu	commit \| commitdiff \| tree
2019-01-22	Berk Hess	Remove now usused GPU alloc/free functions	commit \| commitdiff \| tree
2019-01-22	Berk Hess	Convert NbnxnPairlistGpu to C++	commit \| commitdiff \| tree
2019-01-22	Mark Abraham	Remove init_md and improve init_em	commit \| commitdiff \| tree
2019-01-22	Christoph Junghans	gmxManageLmfit.cmake: enforce usage of 7.0	commit \| commitdiff \| tree
2019-01-21	Szilárd Páll	Add CUDA CC 7.5 (Turing) support with nvcc	commit \| commitdiff \| tree
2019-01-21	Berk Hess	Convert nbnxn_atomdata_t to C++	commit \| commitdiff \| tree
2019-01-21	Paul Bauer	Refactor ResidueTypes	commit \| commitdiff \| tree
2019-01-18	Paul Bauer	Change one gmx_mtop_t atom loop to C++	commit \| commitdiff \| tree
2019-01-18	Mark Abraham	Remove ctest section called simple	commit \| commitdiff \| tree
2019-01-18	M. Eric Irrgang	Remove .travis.yml Travis-CI config file.	commit \| commitdiff \| tree
2019-01-17	Paul Bauer	Change ResidueTypes to class	commit \| commitdiff \| tree
2019-01-16	Mark Abraham	Migrate test configuration off bs_mac	commit \| commitdiff \| tree
2019-01-16	Mark Abraham	Remove several unnecessary things	commit \| commitdiff \| tree
2019-01-16	Berk Hess	Rename HostVector to PaddedHostVector	commit \| commitdiff \| tree
2019-01-15	Mark Abraham	Reverted standard ExternalProject for FFTW download	commit \| commitdiff \| tree
2019-01-15	Roland Schulz	Require cmake 3.9.6	commit \| commitdiff \| tree
2019-01-15	Paul Bauer	Remove raw pointers in index handling	commit \| commitdiff \| tree
2019-01-14	Kevin Boyd	Partial conversion of gmx msd to std::vector	commit \| commitdiff \| tree
2019-01-14	Paul Bauer	Refactor AtomProperties into C++	commit \| commitdiff \| tree
2019-01-13	Kevin Boyd	Add grompp check for usage of "define" field in mdp	commit \| commitdiff \| tree
2019-01-11	Paul Bauer	Make AtomProperties class with Impl	commit \| commitdiff \| tree
2019-01-11	Mark Abraham	Use enum class for grompp directives	commit \| commitdiff \| tree
2019-01-11	Mark Abraham	Fix typo in release notes	commit \| commitdiff \| tree
2019-01-11	Mark Abraham	Add helper functionality for safer enumerations	commit \| commitdiff \| tree
2019-01-11	David van der Spoel	Added low-level tests for improper dihedrals.	commit \| commitdiff \| tree
2019-01-10	Mark Abraham	Add more checks for division by zero	commit \| commitdiff \| tree
2019-01-10	Berk Hess	Split nbnxn_atomdata_init()	commit \| commitdiff \| tree
2019-01-10	Berk Hess	Change grid pointers in nbnxn search to references	commit \| commitdiff \| tree
2019-01-10	Berk Hess	Split nbnxn_list_work_t and change to C++	commit \| commitdiff \| tree
2019-01-10	Paul Bauer	Add mtop comparison function	commit \| commitdiff \| tree
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