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2014-01-15	David van der Spoel	This patch moves the nrama.[ch] to the gmxana dir.	commit \| commitdiff \| tree
2014-01-15	Teemu Murtola	Reorganize shared unit test code	commit \| commitdiff \| tree
2014-01-14	Mark Abraham	Stop doing cppcheck on src/external	commit \| commitdiff \| tree
2014-01-14	Teemu Murtola	Don't install links.dat	commit \| commitdiff \| tree
2014-01-14	Teemu Murtola	Split CommandLineHelpModule into a separate file	commit \| commitdiff \| tree
2014-01-14	Teemu Murtola	Fix line wrapping for long options	commit \| commitdiff \| tree
2014-01-14	Mark Abraham	Remove useless trjcat -prec option	commit \| commitdiff \| tree
2014-01-13	Carsten Kutzner	Move pull code to separate subdirectory	commit \| commitdiff \| tree
2014-01-13	Teemu Murtola	Move writeps.* into fileio/	commit \| commitdiff \| tree
2014-01-13	Teemu Murtola	Move gmxcomplex.h to gromacs/math/	commit \| commitdiff \| tree
2014-01-13	Mark Abraham	Fix mdrun integration tests	commit \| commitdiff \| tree
2014-01-13	Teemu Murtola	Fix installation of HTML manual	commit \| commitdiff \| tree
2014-01-13	David van der Spoel	Cleaned up list of GROMACS authors	commit \| commitdiff \| tree
2014-01-11	Carsten Kutzner	Move essential dynamics / flooding code to separate...	commit \| commitdiff \| tree
2014-01-10	Carsten Kutzner	Read essential dynamics data from checkpoint at correct...	commit \| commitdiff \| tree
2014-01-09	Jochen Hub	Fixed non-working flat-bottom posres code.	commit \| commitdiff \| tree
2014-01-09	Roland Schulz	Add SIMD support for Intel MIC	commit \| commitdiff \| tree
2014-01-09	Roland Schulz	Remove reimplimentation of two functions	commit \| commitdiff \| tree
2014-01-09	Roland Schulz	Remove some usage of SIZEOF*	commit \| commitdiff \| tree
2014-01-09	Teemu Murtola	Add messages for skipped tests in make check	commit \| commitdiff \| tree
2014-01-09	Teemu Murtola	Fix copyright check in admin/uncrustify.sh	commit \| commitdiff \| tree
2014-01-08	Mark Abraham	Remove unreachable fatal error	commit \| commitdiff \| tree
2014-01-08	Mark Abraham	Remove unused debug code	commit \| commitdiff \| tree
2014-01-08	Mark Abraham	Add helpful note about changed default behaviour	commit \| commitdiff \| tree
2014-01-08	Teemu Murtola	Move gmx_sort.* to src/gromacs/utility/	commit \| commitdiff \| tree
2014-01-07	Teemu Murtola	Move gstat.h to gmxana/	commit \| commitdiff \| tree
2014-01-07	Teemu Murtola	Improve include dependency script	commit \| commitdiff \| tree
2014-01-05	Carsten Kutzner	Removed a few typos in three German quotes.	commit \| commitdiff \| tree
2014-01-04	Teemu Murtola	Fix #include style issues	commit \| commitdiff \| tree
2014-01-04	Teemu Murtola	Don't print quotes on gmx_fatal()	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Add copyright year 2013 to files modified this year	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Include CUDA and latex files in copyright check	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Suppress remaining errors from copyright script	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Fix remaining copyright headers	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	More copyright header updates	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Remove obsolete large file support info	commit \| commitdiff \| tree
2013-12-30	Teemu Murtola	Initialize default index groups for C++ tools	commit \| commitdiff \| tree
2013-12-29	Teemu Murtola	Fix pkgconfig flags with internal Boost	commit \| commitdiff \| tree
2013-12-29	Teemu Murtola	Reset SOVERSION for libgromacs	commit \| commitdiff \| tree
2013-12-28	Teemu Murtola	Change use of compiler flags with GPU + C++11	commit \| commitdiff \| tree
2013-12-28	Teemu Murtola	Move bin/lib suffix management into separate file.	commit \| commitdiff \| tree
2013-12-26	Carsten Kutzner	Pass on default value of radstep in make_edi	commit \| commitdiff \| tree
2013-12-25	Carsten Kutzner	Essential dynamics: move bNeedDoEdsam evaluation to...	commit \| commitdiff \| tree
2013-12-24	Teemu Murtola	Move shell completion things into a separate file	commit \| commitdiff \| tree
2013-12-23	Carsten Kutzner	Fixed essential dynamics (ED) continuation from .cpt...	commit \| commitdiff \| tree
2013-12-21	Teemu Murtola	Move parse_common_args() into commandline/pargs.*	commit \| commitdiff \| tree
2013-12-21	Teemu Murtola	Move pargs.cpp into src/gromacs/commandline/	commit \| commitdiff \| tree
2013-12-21	David van der Spoel	More Nobel quotes and others	commit \| commitdiff \| tree
2013-12-20	Teemu Murtola	Move Program() and ShortProgram() into copyrite.h	commit \| commitdiff \| tree
2013-12-20	Teemu Murtola	Clean up trajectory time control	commit \| commitdiff \| tree
2013-12-20	Christoph Junghans	re-add Carsten & me to the copyrite	commit \| commitdiff \| tree
2013-12-19	Mark Abraham	Fix non-critical typo in #ifdef GMX_OMPEN_MP	commit \| commitdiff \| tree
2013-12-18	Teemu Murtola	Clean up old command line parsing	commit \| commitdiff \| tree
2013-12-17	Erik Lindahl	Added a bunch of quotes from the 2013 Nobel lectures	commit \| commitdiff \| tree
2013-12-16	Erik Lindahl	Moved shared/static library detection to separate module	commit \| commitdiff \| tree
2013-12-16	Erik Lindahl	Moved FFT library processing to separate module	commit \| commitdiff \| tree
2013-12-16	Erik Lindahl	Moved compiler problem detection into separate module	commit \| commitdiff \| tree
2013-12-08	Roland Schulz	Avoid build error if CFLAGS contain quotes	commit \| commitdiff \| tree
2013-12-02	Szilard Pall	remove legacy CUDA non-bonded kernels	commit \| commitdiff \| tree
2013-12-02	Roland Schulz	Merge "Merge branch 'release-4-6'"	commit \| commitdiff \| tree
2013-12-02	Christian Wennberg	Calculating LJ-interactions using Particle mesh Ewald	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Remove remaining uses of programs.txt	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Uniform behavior for 'make man' and 'make html'	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Fix [CHEVRON]/[chevron] for HTML output	commit \| commitdiff \| tree
2013-12-02	Roland Schulz	Replace SUM_SIMD with gmx_sum_simd	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Remove GMX_DOUBLE from config.h	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Don't install headers depending on GMX_INTERNAL_XDR	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Document how to add C++ tools	commit \| commitdiff \| tree
2013-12-01	Mark Abraham	Fix scope and naming of some variables	commit \| commitdiff \| tree
2013-12-01	Mark Abraham	Turn on -Wunused-parameter where applicable	commit \| commitdiff \| tree
2013-12-01	Berk Hess	Fixed zero hardware thread count	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Adjust more copyright headers	commit \| commitdiff \| tree
2013-11-30	Mark Abraham	Add machinery for integration tests	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Remove unused config.h defines	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Remove obsolete FindGit.cmake	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Make help texts refer to gmx-something	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Move gmx_omp.* into src/gromacs/utility/	commit \| commitdiff \| tree
2013-11-28	Rossen Apostolov	Updated to gmock-1.7.0	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Generate gromacs.7 from the wrapper binary	commit \| commitdiff \| tree
2013-11-28	Mark Abraham	Remove IMD manual section	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Uniform headers in HTML pages	commit \| commitdiff \| tree
2013-11-27	Teemu Murtola	Remove unused gmx_membed.c	commit \| commitdiff \| tree
2013-11-26	Teemu Murtola	Remove #ifdef GMX_THREAD_MPI for basic thread safety.	commit \| commitdiff \| tree
2013-11-26	Mark Abraham	Moved gromos87 writing code into fileio module	commit \| commitdiff \| tree
2013-11-26	Mark Abraham	Add license for Sun XDR routines	commit \| commitdiff \| tree
2013-11-19	Teemu Murtola	Add some missing copyright headers.	commit \| commitdiff \| tree
2013-11-19	Szilárd Páll	Fix DD load balancing bug with GPU sharing	commit \| commitdiff \| tree
2013-11-19	Teemu Murtola	Add back mechanism for cross-tool hyperlinks.	commit \| commitdiff \| tree
2013-11-18	Mark Abraham	Bump CMake requirement to 2.8.8	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Move binary directory search to ProgramInfo.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Remove more obsolete content from share/html.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Allow copying of HelpWriterContext.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Add listing of programs by topic to HTML output.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Some module dependency cleanup.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Reorganize help writing code.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Make gmx-gangle more flexible with multiple angles	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Turn on most -Wunused warnings for C++ code.	commit \| commitdiff \| tree
2013-11-15	Teemu Murtola	Consistently handle NULL at argv[argc].	commit \| commitdiff \| tree
2013-11-15	Erik Lindahl	Merge "Merge branch release-4-6"	commit \| commitdiff \| tree
2013-11-15	Teemu Murtola	Simplify GMX_X11 handling.	commit \| commitdiff \| tree
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