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2014-01-29	Teemu Murtola	Merge "Merge branch 'release-4-6'"	commit \| commitdiff \| tree
2014-01-28	Teemu Murtola	Shell completion export from the wrapper binary	commit \| commitdiff \| tree
2014-01-28	Teemu Murtola	Extend version information output	commit \| commitdiff \| tree
2014-01-27	Teemu Murtola	Simplify ProgramInfo	commit \| commitdiff \| tree
2014-01-22	Teemu Murtola	Use local ProgramInfo in CommandLineModuleManager	commit \| commitdiff \| tree
2014-01-21	Teemu Murtola	Remove unused split.h	commit \| commitdiff \| tree
2014-01-21	Teemu Murtola	Improve file name option help	commit \| commitdiff \| tree
2014-01-20	Teemu Murtola	Fix test reference data	commit \| commitdiff \| tree
2014-01-20	Teemu Murtola	Rewrite help output from Options	commit \| commitdiff \| tree
2014-01-19	Teemu Murtola	Fix installed headers	commit \| commitdiff \| tree
2014-01-19	Teemu Murtola	Move md5.* to fileio/	commit \| commitdiff \| tree
2014-01-19	Teemu Murtola	Move strdb.* to src/gromacs/fileio/	commit \| commitdiff \| tree
2014-01-16	Teemu Murtola	Fix build with GMX_BUILD_UNITTESTS=OFF	commit \| commitdiff \| tree
2014-01-15	Teemu Murtola	Support for 64-bit int and real valued Options	commit \| commitdiff \| tree
2014-01-15	Teemu Murtola	Remove unused PCA_KEEP_ARGS	commit \| commitdiff \| tree
2014-01-15	Teemu Murtola	Unit tests for parse_common_args()	commit \| commitdiff \| tree
2014-01-15	Teemu Murtola	Simplify C array handling in C++ code	commit \| commitdiff \| tree
2014-01-15	Teemu Murtola	Reorganize shared unit test code	commit \| commitdiff \| tree
2014-01-14	Teemu Murtola	Don't install links.dat	commit \| commitdiff \| tree
2014-01-14	Teemu Murtola	Split CommandLineHelpModule into a separate file	commit \| commitdiff \| tree
2014-01-14	Teemu Murtola	Fix line wrapping for long options	commit \| commitdiff \| tree
2014-01-13	Teemu Murtola	Move writeps.* into fileio/	commit \| commitdiff \| tree
2014-01-13	Teemu Murtola	Move gmxcomplex.h to gromacs/math/	commit \| commitdiff \| tree
2014-01-13	Teemu Murtola	Fix installation of HTML manual	commit \| commitdiff \| tree
2014-01-09	Teemu Murtola	Add messages for skipped tests in make check	commit \| commitdiff \| tree
2014-01-09	Teemu Murtola	Fix copyright check in admin/uncrustify.sh	commit \| commitdiff \| tree
2014-01-08	Teemu Murtola	Move gmx_sort.* to src/gromacs/utility/	commit \| commitdiff \| tree
2014-01-07	Teemu Murtola	Move gstat.h to gmxana/	commit \| commitdiff \| tree
2014-01-07	Teemu Murtola	Improve include dependency script	commit \| commitdiff \| tree
2014-01-05	Teemu Murtola	Support for default values for SelectionOption	commit \| commitdiff \| tree
2014-01-04	Teemu Murtola	Fix #include style issues	commit \| commitdiff \| tree
2014-01-04	Teemu Murtola	Don't print quotes on gmx_fatal()	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Add copyright year 2013 to files modified this year	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Include CUDA and latex files in copyright check	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Suppress remaining errors from copyright script	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Fix remaining copyright headers	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	More copyright header updates	commit \| commitdiff \| tree
2014-01-01	Teemu Murtola	Remove obsolete large file support info	commit \| commitdiff \| tree
2013-12-30	Teemu Murtola	More robust shell detection in GMXRC	commit \| commitdiff \| tree
2013-12-30	Teemu Murtola	Initialize default index groups for C++ tools	commit \| commitdiff \| tree
2013-12-29	Teemu Murtola	Minor vec.h cleanup	commit \| commitdiff \| tree
2013-12-29	Teemu Murtola	Fix pkgconfig flags with internal Boost	commit \| commitdiff \| tree
2013-12-29	Teemu Murtola	Reset SOVERSION for libgromacs	commit \| commitdiff \| tree
2013-12-28	Teemu Murtola	Change use of compiler flags with GPU + C++11	commit \| commitdiff \| tree
2013-12-28	Teemu Murtola	Move bin/lib suffix management into separate file.	commit \| commitdiff \| tree
2013-12-24	Teemu Murtola	Move shell completion things into a separate file	commit \| commitdiff \| tree
2013-12-24	Teemu Murtola	Get rid of set_default_file_name()	commit \| commitdiff \| tree
2013-12-21	Teemu Murtola	Move parse_common_args() into commandline/pargs.*	commit \| commitdiff \| tree
2013-12-21	Teemu Murtola	Move pargs.cpp into src/gromacs/commandline/	commit \| commitdiff \| tree
2013-12-20	Teemu Murtola	Move Program() and ShortProgram() into copyrite.h	commit \| commitdiff \| tree
2013-12-20	Teemu Murtola	Clean up trajectory time control	commit \| commitdiff \| tree
2013-12-18	Teemu Murtola	Clean up old command line parsing	commit \| commitdiff \| tree
2013-12-08	Teemu Murtola	Don't create symlinks in the build tree	commit \| commitdiff \| tree
2013-12-04	Teemu Murtola	Fix test build with GMX_BUILD_MDRUN_ONLY	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Remove remaining uses of programs.txt	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Uniform behavior for 'make man' and 'make html'	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Fix [CHEVRON]/[chevron] for HTML output	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Remove GMX_DOUBLE from config.h	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Don't install headers depending on GMX_INTERNAL_XDR	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Document how to add C++ tools	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Adjust more copyright headers	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Remove unused config.h defines	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Remove obsolete FindGit.cmake	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Make help texts refer to gmx-something	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Move gmx_omp.* into src/gromacs/utility/	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Generate gromacs.7 from the wrapper binary	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Fix some #include problems.	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Uniform headers in HTML pages	commit \| commitdiff \| tree
2013-11-27	Teemu Murtola	Remove unused gmx_membed.c	commit \| commitdiff \| tree
2013-11-26	Teemu Murtola	Remove #ifdef GMX_THREAD_MPI for basic thread safety.	commit \| commitdiff \| tree
2013-11-20	Teemu Murtola	Update copyright headers in kernels.	commit \| commitdiff \| tree
2013-11-20	Teemu Murtola	Update copyright headers in generated kernels.	commit \| commitdiff \| tree
2013-11-20	Teemu Murtola	Script to automatically update copyright	commit \| commitdiff \| tree
2013-11-19	Teemu Murtola	Add some missing copyright headers.	commit \| commitdiff \| tree
2013-11-19	Teemu Murtola	Add back mechanism for cross-tool hyperlinks.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Reformat existing LGPL copyright notices.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Move binary directory search to ProgramInfo.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Remove more obsolete content from share/html.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Allow copying of HelpWriterContext.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Add listing of programs by topic to HTML output.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Some module dependency cleanup.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Reorganize help writing code.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Make gmx-gangle more flexible with multiple angles	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Turn on most -Wunused warnings for C++ code.	commit \| commitdiff \| tree
2013-11-15	Teemu Murtola	Consistently handle NULL at argv[argc].	commit \| commitdiff \| tree
2013-11-15	Teemu Murtola	Simplify GMX_X11 handling.	commit \| commitdiff \| tree
2013-11-12	Teemu Murtola	Upgrade Doxygen layout to 1.8.5.	commit \| commitdiff \| tree
2013-10-31	Teemu Murtola	Move more timing routines into timing/.	commit \| commitdiff \| tree
2013-10-30	Teemu Murtola	Markup substitution through HelpWriterContext.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Overview Doxygen pages for analysis framework.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Some overview content for Doxygen documentation.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Misc. Doxygen updates for src/gromacs/utility/.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Simplify code structure for C++ analysis tools	commit \| commitdiff \| tree
2013-10-20	Teemu Murtola	Remove useless warnings from Doxygen logs.	commit \| commitdiff \| tree
2013-10-18	Teemu Murtola	Upgrade layout file to support Doxygen >=1.8.	commit \| commitdiff \| tree
2013-10-16	Teemu Murtola	Remove latex help export.	commit \| commitdiff \| tree
2013-10-15	Teemu Murtola	Fix/improve installation directory logic.	commit \| commitdiff \| tree
2013-10-07	Teemu Murtola	Improve markup substitution in HelpWriterContext.	commit \| commitdiff \| tree
2013-10-07	Teemu Murtola	HTML export from the wrapper binary.	commit \| commitdiff \| tree
2013-10-04	Teemu Murtola	Clean up CTest usage.	commit \| commitdiff \| tree
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