biod.pnpi.spb.ru
/
alexxy
/
gromacs.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
Implement user guide
[alexxy/gromacs.git]
/
src
/
2015-02-04
Mark Abraham
Implement user guide
tree
|
commitdiff
2015-02-02
Mark Abraham
Merge branch release-5-0
tree
|
commitdiff
2015-02-02
Mark Abraham
Avoid near-silent generation of zero energies
tree
|
commitdiff
2015-02-02
Roland Schulz
Fix FP exception in FE
tree
|
commitdiff
2015-02-02
Mark Abraham
Fix use of simd.h
tree
|
commitdiff
2015-01-29
Teemu Murtola
Add input file options that accept missing files
tree
|
commitdiff
2015-01-29
John Baxter
Removes some unnecessary ternary conditionals
tree
|
commitdiff
2015-01-27
Roland Schulz
Workaround for MemorySanitizer
tree
|
commitdiff
2015-01-27
Roland Schulz
Fix unitlized memory read in checkpoint
tree
|
commitdiff
2015-01-24
Teemu Murtola
Remove old selection parser error handling code
tree
|
commitdiff
2015-01-24
Teemu Murtola
Improve selection error messages (use exceptions)
tree
|
commitdiff
2015-01-23
John Baxter
Cleans up steepest descent initial potential hack
tree
|
commitdiff
2015-01-23
Mark Abraham
Change some listed-forces headers to be library-only
tree
|
commitdiff
2015-01-22
John Baxter
Changed "struct swap" to "struct t_swap"
tree
|
commitdiff
2015-01-21
Berk Hess
Corrected RDTSCP warning text
tree
|
commitdiff
2015-01-20
Teemu Murtola
Make data file path search more reusable
tree
|
commitdiff
2015-01-20
Mark Abraham
Removed gmx_header_config.h
tree
|
commitdiff
2015-01-20
Teemu Murtola
Convert forcefield search to C++
tree
|
commitdiff
2015-01-19
Teemu Murtola
Remove AnalysisNeighborhood::setUseBoundingBox()
tree
|
commitdiff
2015-01-17
Teemu Murtola
Merge "Merge branch release-5-0"
tree
|
commitdiff
2015-01-16
Szilard Pall
Improve and clarify mdrun behavior with nsteps<0
tree
|
commitdiff
2015-01-15
Mark Abraham
Merge branch release-5-0
tree
|
commitdiff
2015-01-15
Berk Hess
Fix allocation issue with VV integrator
tree
|
commitdiff
2015-01-14
Mark Abraham
Fix and suppress warnings on BlueGene/Q
tree
|
commitdiff
2015-01-14
Mark Abraham
Refactor OpenMP initialization
tree
|
commitdiff
2015-01-14
Mark Abraham
Remove temporary symlinks from pre-5.0 tool names
tree
|
commitdiff
2015-01-09
Mark Abraham
Remove mdrun -testverlet
tree
|
commitdiff
2015-01-08
Teemu Murtola
Refactor logic for finding share/top/ files
tree
|
commitdiff
2015-01-08
Mark Abraham
Handle ivec* correctly in DD error message
tree
|
commitdiff
2015-01-08
Mark Abraham
Fix floating-point exception
tree
|
commitdiff
2015-01-08
Teemu Murtola
Closed some .xvg files that were being left open
tree
|
commitdiff
2015-01-07
Teemu Murtola
Custom program context for unit tests
tree
|
commitdiff
2015-01-07
Teemu Murtola
Split unit test init from testoptions.cpp
tree
|
commitdiff
2015-01-06
Teemu Murtola
Use analysis nbsearch for surface area calculation
tree
|
commitdiff
2015-01-06
Teemu Murtola
Use xvgrclose() for files opened with xvgropen()
tree
|
commitdiff
2015-01-05
Teemu Murtola
Support subset of rvec array as input for analysis...
tree
|
commitdiff
2015-01-05
Teemu Murtola
Minimal C++ replacement for rvec
tree
|
commitdiff
2015-01-05
Teemu Murtola
Clarify GMX_MPI management
tree
|
commitdiff
2015-01-05
Roland Schulz
Enable fp-exceptions
tree
|
commitdiff
2015-01-03
Teemu Murtola
Minor selection clarifications
tree
|
commitdiff
2015-01-03
Teemu Murtola
Fix crash with 'z of ...' within an expression
tree
|
commitdiff
2015-01-02
Teemu Murtola
Update copyright year in copyrite.cpp
tree
|
commitdiff
2014-12-28
Teemu Murtola
Convert gmx-insert-molecules into proper C++ module
tree
|
commitdiff
2014-12-28
Teemu Murtola
Add helper for generic C++ command-line modules
tree
|
commitdiff
2014-12-22
Berk Hess
Fixed pbc=xy + 2 walls + Verlet scheme
tree
|
commitdiff
2014-12-22
Berk Hess
Fix bug FE + GPU + 2/3D domain decomposition
tree
|
commitdiff
2014-12-18
Teemu Murtola
Rework gmx-solvate to use analysis nbsearch
tree
|
commitdiff
2014-12-17
Teemu Murtola
Make 'gmx sasa' calculation thread-safe
tree
|
commitdiff
2014-12-17
Roland Schulz
Merge "Merge branch 'release-5-0'"
tree
|
commitdiff
2014-12-17
Roland Schulz
Fix cppcheck-1.67 warnings
tree
|
commitdiff
2014-12-16
Teemu Murtola
Make 'gmx sasa' volume computation translation-invariant
tree
|
commitdiff
2014-12-16
Mark Abraham
Move code to prepare for GPU interface rework
tree
|
commitdiff
2014-12-15
Mark Abraham
Merge branch 'release-5-0'
tree
|
commitdiff
2014-12-15
Mark Abraham
Removing iteration + constraints framework
tree
|
commitdiff
2014-12-15
Mark Abraham
Fix constraints checks in grompp
tree
|
commitdiff
2014-12-15
Mark Abraham
Merge "Merge release-4-6 into release-5-0" into release-5-0
tree
|
commitdiff
2014-12-14
Teemu Murtola
C++ interface for surface area calculation
tree
|
commitdiff
2014-12-13
Roland Schulz
Use bitmask for bonded
tree
|
commitdiff
2014-12-13
Mark Abraham
Remove heuristic group-scheme neighbour-list updates
tree
|
commitdiff
2014-12-13
Mark Abraham
Fix latent bug in OpenMP initialization
tree
|
commitdiff
2014-12-12
Mark Abraham
Add StringFormatter and formatAndJoin to stringutil
tree
|
commitdiff
2014-12-11
Teemu Murtola
Convert gmx rdf to the C++ framework
tree
|
commitdiff
2014-12-11
Mark Abraham
Merge release-4-6 into release-5-0
tree
|
commitdiff
2014-12-11
Berk Hess
Added grompp error for pulling to negative distance
tree
|
commitdiff
2014-12-10
Szilard Pall
Fix nstep command line override print
tree
|
commitdiff
2014-12-10
Teemu Murtola
Fix misc. analysis neighborhood search issues
tree
|
commitdiff
2014-12-09
Teemu Murtola
Track locations for selection parsing products
tree
|
commitdiff
2014-12-09
Berk Hess
Fix recent bug with trilinic 1D DD
tree
|
commitdiff
2014-12-09
Carsten Kutzner
Make tune_pme understand the "-nsteps" option. Fixes...
tree
|
commitdiff
2014-12-08
Mark Abraham
Merge "Merge release-5-0 into master"
tree
|
commitdiff
2014-12-08
Teemu Murtola
Rectangular grid for analysis nbsearch
tree
|
commitdiff
2014-12-08
Berk Hess
Fixed pull coord init with rate!=0, t_start!=0
tree
|
commitdiff
2014-12-08
Mark Abraham
Fix group-scheme bug with changing LJ parameters in FE
tree
|
commitdiff
2014-12-08
Berk Hess
Added PBC note to comm-mode=angular warning
tree
|
commitdiff
2014-12-08
Mark Abraham
Add basic GPU support for gmx tune-pme
tree
|
commitdiff
2014-12-07
Roland Schulz
Merge release-5-0 into master
tree
|
commitdiff
2014-12-06
Teemu Murtola
Simplify analysisdata parallelism model
tree
|
commitdiff
2014-12-05
Jiri Kraus
Add optional NVIDIA Management Library (NVML) Integration
tree
|
commitdiff
2014-12-05
Mark Abraham
Clean up non-PME part of ewald module
tree
|
commitdiff
2014-12-05
Mark Abraham
Make mdrun print the list of compatible GPUs
tree
|
commitdiff
2014-12-05
Mark Abraham
Move threading support into listed-forces module
tree
|
commitdiff
2014-12-05
Mark Abraham
Created do_force_listed and moved code to the module
tree
|
commitdiff
2014-12-05
Berk Hess
Make domdec a proper module
tree
|
commitdiff
2014-12-05
Berk Hess
Clarified grompp pull error messages
tree
|
commitdiff
2014-12-05
Teemu Murtola
Improve selection parsing error reporting
tree
|
commitdiff
2014-12-05
Berk Hess
Avoid race on dvdl with Verlet+OpenMP+LINCS+FE+VV
tree
|
commitdiff
2014-12-05
Teemu Murtola
Non-periodic nbsearch with grid based on bounding box
tree
|
commitdiff
2014-12-02
Teemu Murtola
Add 'gmx pairdist' tool as partial g_mindist replacement
tree
|
commitdiff
2014-12-02
Teemu Murtola
Analysis grid nbsearch for more cases
tree
|
commitdiff
2014-12-01
Berk Hess
Added warning for unnecessary soft-core
tree
|
commitdiff
2014-11-29
Teemu Murtola
Basic support for 'z of ...' selections
tree
|
commitdiff
2014-11-29
Szilárd Páll
Add kernel and compiler suport for CC 3.7 devices
tree
|
commitdiff
2014-11-28
Teemu Murtola
Clarify memory management for selection values
tree
|
commitdiff
2014-11-28
Teemu Murtola
Helper function for grouping selection positions
tree
|
commitdiff
2014-11-28
David van der Spoel
Fixes recently introduced bug in gmx analyze.
tree
|
commitdiff
2014-11-27
Mark Abraham
Convert remaining callers of do_force to C++
tree
|
commitdiff
2014-11-27
Mark Abraham
Remove use of interaction_mask_indices on BG/Q
tree
|
commitdiff
2014-11-27
Mark Abraham
Merge branch release-4-6 into release-5-0
tree
|
commitdiff
2014-11-27
Teemu Murtola
Clean up gmx solvate
tree
|
commitdiff
2014-11-27
Teemu Murtola
Port gmx-solvate tests to use CommandLineTestBase
tree
|
commitdiff
next