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Fix message about incorrect usage of dihedral type 9
[alexxy/gromacs.git]
/
src
/
2013-10-26
Roland Schulz
Fix NBNxN SIMD reference kernels
tree
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commitdiff
2013-10-22
Berk Hess
fixed recent bug with CUDA texture objects
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commitdiff
2013-10-22
Berk Hess
fixed OpenMP threads being pinned to the same cores
tree
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commitdiff
2013-10-18
Mark Abraham
BlueGene/Q Verlet cut-off scheme kernels
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commitdiff
2013-10-17
Mark Abraham
Fix typo in g_membed documentation
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commitdiff
2013-10-17
Roland Schulz
Fix SIMD C reference nbnxn kernels
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commitdiff
2013-10-17
Michael Shirts
Restarting from checkpoint no longer reinitializes...
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commitdiff
2013-10-16
Berk Hess
avoid division by zero in SIMD angles and dihedrals
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commitdiff
2013-10-16
Michael Shirts
turning off expanded ensemble for all integrators but...
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commitdiff
2013-10-16
Berk Hess
fixed a half bin misalignment in gmx_vanhove -or
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commitdiff
2013-10-16
Michael Shirts
Fixes a problem with pair type 2 interactions with...
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commitdiff
2013-10-15
Szilard Pall
make use of CUDA stream priorities
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commitdiff
2013-10-14
Szilard Pall
use CUDA texture objects when supported
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commitdiff
2013-10-11
Berk Hess
introduced general 4-wide SIMD support
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commitdiff
2013-10-10
Berk Hess
fixed nbnxn 4x8 pair search without AVX
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commitdiff
2013-10-03
Christoph Junghans
Fix parallel build for GMX_BUILD_OWN_FFTW
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commitdiff
2013-10-02
Berk Hess
Fixes reaction field free energy bug
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commitdiff
2013-10-01
Mark Abraham
Silence clang warnings
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commitdiff
2013-09-29
Szilard Pall
allow compilation to optimize for CUDA compute cap...
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commitdiff
2013-09-29
Jarvist Moore Frost
Corrected info text. -center --> -boxcenter
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commitdiff
2013-09-27
Manuel Luitz
Fixed limitations in g_cluster
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commitdiff
2013-09-26
Michael Shirts
logic fix for free energies with mdrun -rerun
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commitdiff
2013-09-26
Christoph Junghans
Drop md5sum check for GMX_BUILD_OWN_FFTW
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commitdiff
2013-09-25
Erik Lindahl
Fix bug in (long) neighborlist SIMD padding when adding...
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commitdiff
2013-09-21
Berk Hess
fixed multiple distance restraints with OpenMP
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commitdiff
2013-09-20
Mark Abraham
Described another way g_tune_pme might reasonably fail
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commitdiff
2013-09-20
Mark Abraham
Fix total time measurement with separate PME nodes
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commitdiff
2013-09-19
Mark Abraham
Fixed reading history_t from checkpoint
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commitdiff
2013-09-19
Mark Abraham
Fixed g_tune_pme assumption that MPI is available
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commitdiff
2013-09-18
Berk Hess
made free energy PME kernel 40% faster
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commitdiff
2013-09-16
Berk Hess
mdrun without OpenMP with thread-MPI now uses all cores
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commitdiff
2013-09-13
Berk Hess
corrected grompp constraint/DOF warning with vsites
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commitdiff
2013-08-25
Mark Abraham
Split up Verlet SIMD kernels for faster compilation
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commitdiff
2013-08-25
Mark Abraham
Fix detection and suggestion in gmx_cpuid for IBM QPX
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commitdiff
2013-08-25
Berk Hess
introduced nbnxn data structure for bounding boxes
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commitdiff
2013-08-25
Mark Abraham
Consolidated NBNxN SIMD kernel utility routines
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commitdiff
2013-08-25
Mark Abraham
Fix minor wallcycle output issues
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commitdiff
2013-08-25
Mark Abraham
Fixed GMX_DD_DUMP_GRID
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commitdiff
2013-08-20
Berk Hess
fixed parallel normal modes with PME
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commitdiff
2013-08-02
Michael Shirts
Fixing problem caused by overflow in expanded ensemble.
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commitdiff
2013-08-01
Mark Abraham
Refactored preparation of buffer for NBNxN table loads
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commitdiff
2013-08-01
Carsten Kutzner
Properly finalize MPI on mdrun -version. Fixes #1313
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commitdiff
2013-07-25
Justin Lemkul
Updated dlist.c to recognize more atom names.
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commitdiff
2013-07-25
Mark Abraham
Update management of linear algebra libraries
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commitdiff
2013-07-24
David van der Spoel
Fixes #1312 uninitialized error in g_enemat.
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commitdiff
2013-07-24
Berk Hess
implemented plain-C SIMD macros for reference
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commitdiff
2013-07-24
Mark Abraham
Removed buggy -seppot output
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commitdiff
2013-07-18
Mark Abraham
Fixed pdb2gmx -vsite hydrogen -o conf.pdb
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commitdiff
2013-07-14
Mark Abraham
Fixed possible dereference of null pointer
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commitdiff
2013-07-11
Mark Abraham
Fixed typos in #include guard #defines
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commitdiff
2013-07-06
Christoph Junghans
more pkg-config fixes
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commitdiff
2013-07-04
Christoph Junghans
Fixed some inconsistencies in pkg-config files
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commitdiff
2013-07-01
Sander Pronk
Comprehensive hwinfo structure concurrency fix.
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commitdiff
2013-06-28
Justin Lemkul
Minor tweaks to qm_orca.c
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commitdiff
2013-06-28
Justin Lemkul
Fixes to config.h.cmakein to set GMX_QMMM_ORCA.
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commitdiff
2013-06-26
Carsten Kutzner
Fixed -npstring command line argument in g_tune_pme
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commitdiff
2013-06-25
Szilard Pall
added CUDA compiler flags to version header
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commitdiff
2013-06-20
Berk Hess
fixed SD and BD integrator OpenMP performance
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commitdiff
2013-06-20
Michael Shirts
Fixing a problem when dhdl and replex are not multiples
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commitdiff
2013-06-20
Berk Hess
flops table now reports CUDA analytical Ewald
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commitdiff
2013-06-14
Berk Hess
fixed minor g_bar output issues
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commitdiff
2013-06-07
Pedro Lacerda
Add a GMX_NO_CREDITS variable to not show credits
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commitdiff
2013-06-06
Pedro Lacerda
Various fixes for genion
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commitdiff
2013-06-05
Berk Hess
fixed DD internal state corruption with energy minimization
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commitdiff
2013-06-04
Sander Pronk
Fixed inconsistent locality_order array for thread...
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commitdiff
2013-06-04
Sander Pronk
Fixed deadlock on Mac OS X during thread affinity check.
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commitdiff
2013-06-03
Berk Hess
fixed deadlock with replica exchange and -maxh
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commitdiff
2013-05-30
Szilárd Páll
fix unnecessary switch to polling GPU wait
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commitdiff
2013-05-30
Szilard Pall
fix thread-safety issue in affinity layout detection
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commitdiff
2013-05-30
Szilard Pall
fix thread offset + stride check
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commitdiff
2013-05-30
Michael Shirts
Fixing the constraint dhdl term in shake
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commitdiff
2013-05-30
David van der Spoel
Fixes #1194 error reading 4.5.5 tpr files with dihres
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commitdiff
2013-05-30
Mark Abraham
Work around for correct treatment of all-vs-all
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commitdiff
2013-05-28
Carsten Kutzner
Fixed calculation of slab buffer size for flexible...
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commitdiff
2013-05-28
Teemu Murtola
Fix an error in selection online help.
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commitdiff
2013-05-28
Carsten Kutzner
Fix for a rare condition in flexible rotation potentials.
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commitdiff
2013-05-27
Szilard Pall
minor function argument cleanup
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commitdiff
2013-05-27
Carsten Kutzner
Code cleanup in enforced rotation module, remove warnings.
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commitdiff
2013-05-26
Michael Shirts
Fix of memory leak
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commitdiff
2013-05-24
Sander Pronk
Fixed a potential race condition in tMPI_Thread_create()
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commitdiff
2013-05-22
Mark Abraham
Clarify g_gyrate -h
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commitdiff
2013-05-22
Mark Abraham
Fix g_chi -omega
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commitdiff
2013-05-22
Pedro Lacerda
Fix genion -nq and -pq when using -neutral
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commitdiff
2013-05-21
Mark Abraham
Updated grompp cut-off and PME-Switch checks
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commitdiff
2013-05-21
P S Lacerda
Fix -neutral option in genion
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commitdiff
2013-05-21
Michael Shirts
Fixed problem with bond constraint dhdl being left out
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commitdiff
2013-05-21
Erik Lindahl
Fujitsu Sparc64 acceleration and general fixes for...
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commitdiff
2013-05-21
Sander Pronk
New version of thread_mpi with many minor enhancements
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commitdiff
2013-05-17
Mark Abraham
Introduce fatal error for GB with FE
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commitdiff
2013-05-16
Justin Lemkul
Fixed g_sgangle legends.
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commitdiff
2013-05-16
Carsten Kutzner
Choose the PBC image of each rotation group atom depending
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commitdiff
2013-05-15
Christoph Junghans
Merge "fixed incorrect scaling of cos-acceleration...
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commitdiff
2013-05-10
Sander Pronk
Merge "Fixing handling of perturbation mass changes...
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commitdiff
2013-05-10
Mark Abraham
Merge "Fixes "Function type U-B not implemented in...
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commitdiff
2013-05-10
Mark Abraham
Merge "improve build with OpenMM, still not 100% fixed...
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commitdiff
2013-05-10
Mark Abraham
Merge "fixing rerun with free energy + .xtc or .gro...
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commitdiff
2013-05-10
Christoph Junghans
improve build with OpenMM, still not 100% fixed
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commitdiff
2013-05-08
Berk Hess
fixed incorrect scaling of cos-acceleration viscosity
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commitdiff
2013-05-08
Michael Shirts
fixing rerun with free energy + .xtc or .gro
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commitdiff
2013-05-07
Mark Abraham
Fix extant references to former GPL licensing
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