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2014-09-26	Rossen Apostolov	Converted swap module to C++.	commit \| commitdiff \| tree
2014-09-23	Mark Abraham	Renamed bonded module as 'listed-forces'	commit \| commitdiff \| tree
2014-09-23	Mark Abraham	Refactor mdrun integration tests	commit \| commitdiff \| tree
2014-09-23	Roland Schulz	Fix ICC warnings	commit \| commitdiff \| tree
2014-09-23	Teemu Murtola	Generate man pages and completions by default if possible	commit \| commitdiff \| tree
2014-09-22	Teemu Murtola	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-09-20	Teemu Murtola	Remove duplication in version info target creation	commit \| commitdiff \| tree
2014-09-20	Erik Lindahl	Added a bunch of new and old quotes.	commit \| commitdiff \| tree
2014-09-20	Teemu Murtola	Fix patterns for .gitattributes	commit \| commitdiff \| tree
2014-09-20	Roland Schulz	Minor performance improments	commit \| commitdiff \| tree
2014-09-19	Teemu Murtola	Proper dependencies for Doxygen build rules	commit \| commitdiff \| tree
2014-09-19	Teemu Murtola	Fix histogram resampling output bin positions	commit \| commitdiff \| tree
2014-09-19	Teemu Murtola	Embed module dependency graph in Doxygen docs	commit \| commitdiff \| tree
2014-09-19	Teemu Murtola	More precise analysisdata histogram accumulation	commit \| commitdiff \| tree
2014-09-19	Teemu Murtola	Misc. Doxygen build system improvements	commit \| commitdiff \| tree
2014-09-18	Roland Schulz	Fix double linkage for tests	commit \| commitdiff \| tree
2014-09-17	Roland Schulz	Add missing quotes	commit \| commitdiff \| tree
2014-09-17	Roland Schulz	Fix shared libs for Mingw	commit \| commitdiff \| tree
2014-09-16	Roland Schulz	Fix warnings for ICC 15	commit \| commitdiff \| tree
2014-09-13	Teemu Murtola	Declare __STDC_*_MACROS in gmxpre.h	commit \| commitdiff \| tree
2014-09-12	Mark Abraham	Minor changes to mdrun -h descriptions	commit \| commitdiff \| tree
2014-09-11	Roland Schulz	Fix sorting and doxygen	commit \| commitdiff \| tree
2014-09-11	Teemu Murtola	Improve uncrustify.sh return code handling	commit \| commitdiff \| tree
2014-09-11	Teemu Murtola	Include directive sorter	commit \| commitdiff \| tree
2014-09-11	Teemu Murtola	Add gmx_getpid()	commit \| commitdiff \| tree
2014-09-11	Erik Lindahl	Enable static anon namespace workaround on pathscale	commit \| commitdiff \| tree
2014-09-10	Erik Lindahl	Improve performance of MIC exponential	commit \| commitdiff \| tree
2014-09-10	David van der Spoel	Remove .tpa, .tpb, .tpx, .trj files. Part of #1500.	commit \| commitdiff \| tree
2014-09-10	Justin Lemkul	Added flat-bottom cylindrical restraints in x and y.	commit \| commitdiff \| tree
2014-09-09	Rossen Apostolov	Converted groupcoord to C++.	commit \| commitdiff \| tree
2014-09-09	Rossen Apostolov	Converted fft files to C++.	commit \| commitdiff \| tree
2014-09-08	Teemu Murtola	Support custom default extension for FileNameOption	commit \| commitdiff \| tree
2014-09-08	Teemu Murtola	Remove unnecessary extensions in t_filenm defaults	commit \| commitdiff \| tree
2014-09-07	Teemu Murtola	More consistent default handling for StringOption	commit \| commitdiff \| tree
2014-09-07	Teemu Murtola	Update template/README	commit \| commitdiff \| tree
2014-09-07	Roland Schulz	Remove some include order dependencies	commit \| commitdiff \| tree
2014-09-07	Roland Schulz	Fix build for external boost 1.56.0	commit \| commitdiff \| tree
2014-09-07	Roland Schulz	Simplify AVX integer load/store	commit \| commitdiff \| tree
2014-09-05	Teemu Murtola	Another batch of added config.h	commit \| commitdiff \| tree
2014-09-05	Teemu Murtola	Make doc-check fail the build on warnings	commit \| commitdiff \| tree
2014-09-05	Teemu Murtola	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-09-04	Roland Schulz	Add Mingw warnings	commit \| commitdiff \| tree
2014-09-04	Roland Schulz	Slight simplifcation of 2xnn	commit \| commitdiff \| tree
2014-09-04	Teemu Murtola	Make doc-check silent for in-source build	commit \| commitdiff \| tree
2014-09-04	Teemu Murtola	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2014-09-04	Erik Lindahl	K-computer specific modifications	commit \| commitdiff \| tree
2014-09-04	Christoph Junghans	cmake: missing quote	commit \| commitdiff \| tree
2014-09-03	Erik Lindahl	Fixed sc_power==48 crash in single precision	commit \| commitdiff \| tree
2014-09-03	Mark Abraham	Fix mis-use of fabs in LAPACK	commit \| commitdiff \| tree
2014-09-03	Mark Abraham	More hacking to get the template to detect and build	commit \| commitdiff \| tree
2014-09-03	Roland Schulz	Fix that TNG tests were not run	commit \| commitdiff \| tree
2014-09-03	Erik Lindahl	Fixed preprocessor error for AVX_128_FMA simd	commit \| commitdiff \| tree
2014-09-02	Erik Lindahl	Fix formatting of fatal errors in g_bar	commit \| commitdiff \| tree
2014-09-02	Roland Schulz	Fix PRINT_ALLOC_KB output	commit \| commitdiff \| tree
2014-09-02	Magnus Lundborg	TNG Fix for GMX_DOUBLE builds and where ZLIB is not...	commit \| commitdiff \| tree
2014-09-02	Magnus Lundborg	Fix data block length when uncompressing TNG data.	commit \| commitdiff \| tree
2014-09-01	Magnus Lundborg	TNG: Handle large files on 32 bit systems.	commit \| commitdiff \| tree
2014-09-01	Justin Lemkul	Updated x-axis label for g_wham.	commit \| commitdiff \| tree
2014-09-01	Magnus Lundborg	When writing TNG include file closing in wallcycle.	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Fix and document issues with template.cpp	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Merge "Merge branch release-4-6 into release-5-0" into...	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Fixes and updates to BlueGene/Q support	commit \| commitdiff \| tree
2014-09-01	Mark Abraham	Merge "Merge branch release-4-6 into release-5-0" into...	commit \| commitdiff \| tree
2014-08-31	Erik Lindahl	Added negative zero preprocessor constants	commit \| commitdiff \| tree
2014-08-28	Berk Hess	Fixed two PME issues with MPI+OpenMP	commit \| commitdiff \| tree
2014-08-24	Berk Hess	Initialize unused velocity constraint components	commit \| commitdiff \| tree
2014-08-24	Teemu Murtola	Improve analysis nbsearch grid mapping	commit \| commitdiff \| tree
2014-08-23	Mark Abraham	Unify documentation for webpage build	commit \| commitdiff \| tree
2014-08-22	Mark Abraham	Fix zlib usage with TNG	commit \| commitdiff \| tree
2014-08-21	Magnus Lundborg	Fixed TNG memory alignment problem and reset pointers.	commit \| commitdiff \| tree
2014-08-21	Mark Abraham	Fix mis-use of fabs in LAPACK	commit \| commitdiff \| tree
2014-08-20	Erik Lindahl	Add _GNU_SOURCE=1 to find clone() with PGI	commit \| commitdiff \| tree
2014-08-20	Roland Schulz	Change error to warning for missing OMP_NUM_THREADS	commit \| commitdiff \| tree
2014-08-20	Erik Lindahl	Fix matrix pointer dereference bug in update.c	commit \| commitdiff \| tree
2014-08-20	Erik Lindahl	Enable SIMD register calling convention with gmx_simdcall	commit \| commitdiff \| tree
2014-08-20	Erik Lindahl	Add cycle counters for 64-bit ARM	commit \| commitdiff \| tree
2014-08-20	Erik Lindahl	Shorten plugin configuration message	commit \| commitdiff \| tree
2014-08-17	Roland Schulz	Remove check that auto-generated files exist	commit \| commitdiff \| tree
2014-08-17	Erik Lindahl	Fix Portland compiler warnings	commit \| commitdiff \| tree
2014-08-17	Berk Hess	Halved the cost of the pull communication	commit \| commitdiff \| tree
2014-08-17	Roland Schulz	Don't build tests until they are run	commit \| commitdiff \| tree
2014-08-17	Roland Schulz	Use full path for legacyheaders	commit \| commitdiff \| tree
2014-08-16	Mark Abraham	Fix gmx tune_pme with LJ-PME	commit \| commitdiff \| tree
2014-08-16	Mark Abraham	Fix wallcycle counting with md-vv, sd and sd2	commit \| commitdiff \| tree
2014-08-16	Teemu Murtola	Disable analysisdata generic tests if not compilable	commit \| commitdiff \| tree
2014-08-14	Berk Hess	Corrected SIMD math overflow documentation	commit \| commitdiff \| tree
2014-08-13	Teemu Murtola	Use native CMake mechanism for find_package(GROMACS)	commit \| commitdiff \| tree
2014-08-13	Teemu Murtola	Reorganize CMake version information management	commit \| commitdiff \| tree
2014-08-11	Roland Schulz	Move some verlet headers to mdlib	commit \| commitdiff \| tree
2014-08-11	Mark Abraham	Add depressing quote	commit \| commitdiff \| tree
2014-08-11	Stefan Fleischmann	Avoid stack overflow on Windows with CMake > 2.8.10.2	commit \| commitdiff \| tree
2014-08-10	Erik Lindahl	Improve Gromacs portability	commit \| commitdiff \| tree
2014-08-10	Erik Lindahl	Replace __LP64__ with check for pointer size	commit \| commitdiff \| tree
2014-08-10	Berk Hess	Added checks for TPI + Verlet scheme	commit \| commitdiff \| tree
2014-08-10	Roland Schulz	Check MD5sum for regressiontest	commit \| commitdiff \| tree
2014-08-07	Erik Lindahl	Fix portability issue with ArrayRef initializer overloading	commit \| commitdiff \| tree
2014-08-07	Erik Lindahl	Changed names of test files to avoid Fujitsu compiler bug	commit \| commitdiff \| tree
2014-08-05	Berk Hess	Fix hang with LJ-PME and empty domains	commit \| commitdiff \| tree
2014-08-05	Roland Schulz	Workaround for ICC 14	commit \| commitdiff \| tree
2014-08-01	Erik Lindahl	Added tests for denormal and underflow for simd exp()	commit \| commitdiff \| tree
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