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SYCL: Avoid using no_init read accessor in rocFFT
[alexxy/gromacs.git]
/
src
/
2021-11-05
Andrey Alekseenko
SYCL: Avoid using no_init read accessor in rocFFT
master
tree
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commitdiff
2021-11-05
Szilárd Páll
Split simulationWork.useGpuBufferOps into separate...
tree
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commitdiff
2021-11-05
Mark Abraham
Permit tests to specify the refdata filename
tree
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commitdiff
2021-11-04
Szilárd Páll
Make stepWorkload.useGpuXBufferOps flag consistent
tree
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commitdiff
2021-11-04
Berk Hess
Clean up index handing in make_bondeds_zone
tree
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commitdiff
2021-11-03
Andrey Alekseenko
Unify handling of GMX_ENABLE_GPU_TIMING and GMX_DISABLE...
tree
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commitdiff
2021-11-03
Magnus Lundborg
Update mdrun message to reflect that Cuda CC>=3.5 is...
tree
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commitdiff
2021-11-03
Magnus Lundborg
Add TNG to trjconv doc and more details about TNG selec...
tree
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commitdiff
2021-11-03
Andrey Alekseenko
Disable fastmath with OpenCL on Intel devices
tree
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commitdiff
2021-11-03
Andrey Alekseenko
Fix CUDA clang-tidy complaints
tree
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commitdiff
2021-11-03
Mark Abraham
Improve MessageStringCollector
tree
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commitdiff
2021-11-03
Andrey Alekseenko
Avoid allocating SYCL buffer on each call to PME solve
tree
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commitdiff
2021-11-03
Andrey Alekseenko
Fix random typos
tree
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commitdiff
2021-11-03
Joe Jordan
Remove unused thole polarization rfac parameter
tree
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commitdiff
2021-11-03
Andrey Alekseenko
SYCL: Use acc.bind(cgh) instead of cgh.require(acc)
tree
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commitdiff
2021-11-02
Berk Hess
Add second LINCS atom update task
tree
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commitdiff
2021-11-01
Mark Abraham
Add missing MPI_Barrier to MpiTest
tree
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commitdiff
2021-11-01
Eliane Briand
Add DSSP v4 support to do_dssp
tree
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commitdiff
2021-11-01
Szilárd Páll
Fix hipSYCL build with CUDA target
tree
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commitdiff
2021-10-30
Andrey Alekseenko
Silence clang-tidy warnings
tree
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commitdiff
2021-10-30
Andrey Alekseenko
Set up event consumption counter in DomDecMpiTests
tree
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commitdiff
2021-10-29
Magnus Lundborg
Allow TNG to TNG file conversion without time per frame...
tree
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commitdiff
2021-10-29
Alan Gray
Simplify GPU force reduction conditionals
tree
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commitdiff
2021-10-29
Berk Hess
Reimplement constant acceleration groups
tree
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commitdiff
2021-10-29
Mark Abraham
Generalize constraints on MPI rank counts for tests
tree
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commitdiff
2021-10-28
Berk Hess
Document and clean up do_numbering()
tree
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commitdiff
2021-10-28
Berk Hess
Update copyright year for tests/grompp.cpp
tree
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commitdiff
2021-10-27
Andrey Alekseenko
Disable GPU buffer ops when using MTS
tree
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commitdiff
2021-10-27
Berk Hess
Add Oliver Fleetwood as a contributor
tree
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commitdiff
2021-10-27
Szilárd Páll
Unify coordinate copy handling across GPU platforms
tree
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commitdiff
2021-10-27
Oliver Fleetwood
Add preprocessing and integration test for transformati...
tree
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commitdiff
2021-10-27
Joe Jordan
Fix norm calculation in gmx_spatial
tree
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commitdiff
2021-10-27
Paul Bauer
Fix link for dssp download
tree
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commitdiff
2021-10-27
Joe Jordan
Throw on failure in gmx_file_rename
tree
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commitdiff
2021-10-26
Kevin Boyd
Add -maxtau option to gmx msd
tree
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commitdiff
2021-10-26
Mark Abraham
Remove short-circuit logic for OpenMP setup
tree
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commitdiff
2021-10-26
ejjordan
Add parser tests dependency to tests
tree
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commitdiff
2021-10-26
Alan Gray
Insert barrier after each GPU halo test
tree
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commitdiff
2021-10-26
Mark Abraham
Minor improvements to gmx wham output
tree
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commitdiff
2021-10-26
Mark Abraham
Remove/replace many mentions of Jenkins
tree
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commitdiff
2021-10-25
Andrey Alekseenko
Silence Clang's constant-logical-operand warning
tree
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commitdiff
2021-10-24
Kevin Boyd
Update release notes for gmx msd and clear some TODOs
tree
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commitdiff
2021-10-22
Andrey Alekseenko
Get rid of sycl::buffer::reinterpret
tree
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commitdiff
2021-10-22
Mark Abraham
Add utility dependency to libmdrun_test_infrastructure
tree
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commitdiff
2021-10-22
Andrey Alekseenko
Activate GPU update support in SYCL build
tree
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commitdiff
2021-10-22
Mark Abraham
Fix cuda clang-tidy issues
tree
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commitdiff
2021-10-22
Magnus Lundborg
Avoid comparing Simd types to real 0 when making masks...
tree
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commitdiff
2021-10-21
Sebastian Kehl
Fix use of simd-masks in gapsys softcore.
tree
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commitdiff
2021-10-21
Andrey Alekseenko
Balance event consumption for GPU update code path
tree
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commitdiff
2021-10-21
Magnus Lundborg
Minor code clean-up in the NB FEP kernel.
tree
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commitdiff
2021-10-21
Magnus Lundborg
Improve variable naming in NB FEP kernel for loop.
tree
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commitdiff
2021-10-21
Berk Hess
Add lambda state to dhdl.xvg with AWH fep
tree
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commitdiff
2021-10-21
Andrey Alekseenko
Unify a bit decideWhetherToUseGpusForPme* functions
tree
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commitdiff
2021-10-21
Mark Abraham
Refactor PME tests for better usability
tree
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commitdiff
2021-10-21
Berk Hess
Improve AWH bias sharing documentation
tree
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commitdiff
2021-10-20
Andrey Alekseenko
Fix compiler warnings with OpenCL + oneAPI 2021.4
tree
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commitdiff
2021-10-19
Roland Schulz
Fix warnings with Intel 2021.4
tree
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commitdiff
2021-10-19
Andrey Alekseenko
Fix SYCL PME Solve kernel
tree
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commitdiff
2021-10-19
Mark Abraham
Another clang-tidy fix for new GPU code
tree
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commitdiff
2021-10-18
Andrey Alekseenko
Merge release-2021 into master
tree
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commitdiff
2021-10-18
Andrey Alekseenko
Fix UB when generating local indices for constraints
tree
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commitdiff
2021-10-18
Mark Abraham
Fix clang-tidy error in new GPU code
tree
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commitdiff
2021-10-18
Andrey Alekseenko
Disable PME Mixed mode with FEP
tree
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commitdiff
2021-10-14
Alan Gray
Pipeline GPU PME Spline/Spread with PP Comms
tree
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commitdiff
2021-10-14
Andrey Alekseenko
Improve stability of ContinuationIsExact tests
tree
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commitdiff
2021-10-13
Berk Hess
Made gromacs work again without MPI
tree
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commitdiff
2021-10-13
Andrey Alekseenko
Fix fft/CMakeLists when compiling with hipSYCL
tree
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commitdiff
2021-10-13
Mark Abraham
Implement PME solve in SYCL
tree
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commitdiff
2021-10-13
Andrey Alekseenko
Fix clang-tidy complaints
tree
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commitdiff
2021-10-12
Andrey Alekseenko
Stop timers in GpuForceReduction with no atoms
tree
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commitdiff
2021-10-11
M. Eric Irrgang
Fix typo in code comment.
tree
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commitdiff
2021-10-11
Alan Gray
Bug fix for irregular replex steps with GPU update
tree
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commitdiff
2021-10-11
Berk Hess
Fix issues in AWH BiasSharing test
tree
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commitdiff
2021-10-11
M. Eric Irrgang
Normalize API tests.
tree
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commitdiff
2021-10-11
M. Eric Irrgang
More robust preparation for MPI tests.
tree
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commitdiff
2021-10-10
M. Eric Irrgang
Satisfy nblib dependencies with updated library targets.
tree
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commitdiff
2021-10-09
Andrey Alekseenko
SYCL: Reduce local memory usage of LINCS kernel
tree
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commitdiff
2021-10-08
Sebastian Kehl
Adapt testcases for gapsys softcore
tree
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commitdiff
2021-10-06
Pascal Merz
Implement pull for modular simulator
tree
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commitdiff
2021-10-06
Andrey Alekseenko
Fix misc-misplaced-const and unused-parameter warnings
tree
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commitdiff
2021-10-06
Artem Zhmurov
Add constraints test with multiple molecules
tree
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commitdiff
2021-10-06
Andrey Alekseenko
Fix SYCL LINCS kernel
tree
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commitdiff
2021-10-06
Andrey Alekseenko
SYCL: Add missing barrier to NBNXM energy reduction
tree
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commitdiff
2021-10-06
Artem Zhmurov
Add missing synchronization calls in CUDA version of...
tree
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commitdiff
2021-10-06
Alan Gray
Rework GPU halo and state propagator streams and depend...
tree
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commitdiff
2021-10-05
Berk Hess
Make AWH bias sharing more flexible
tree
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commitdiff
2021-10-05
Sebastian Kehl
Clang-format.
tree
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commitdiff
2021-10-05
Sebastian Kehl
More sc-gapsys templates plus fix unused warnigs.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Fix typo introduced during rebase.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Template sc-gapsys functions on computeForces.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Uncapitalize sc-gapsys parameters in input.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Rename sc-sigma-LJ-gapsys to sc-gapsys-sigma-LJ.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Rename sc-scale-X-gapsys to sc-gapsys-scale-X.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Guard for epsfac equals zero in sc-gapsys.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Fix random fpe errors by proper initialization.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Clang-format.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Fix some more double literals.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Fix port of gapsys-LJ to simd.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Fix range checks for new parameters.
tree
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commitdiff
2021-10-05
Sebastian Kehl
Fix sign in 14-interactions with sc-gapsys.
tree
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commitdiff
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