Version bumps after new release
[alexxy/gromacs.git] / src /
2015-07-19 Mark AbrahamUpdate advice about grompp -t
2015-07-17 Carlo CamilloniFixed gmx sasa output residue numbering
2015-07-08 Mark AbrahamGive bTypePerturbed a valid initial value
2015-07-08 Mark AbrahamFix grompp .edr IO estimate for free-energy calcs
2015-07-08 Roland SchulzMerge release-4-6 into release-5-0
2015-07-06 Berk HessFix bug in GPU list balancing
2015-07-04 Teemu MurtolaFix copy-paste bug in gmx distance
2015-06-29 Erik LindahlFix bugs in gmx dos
2015-06-29 Mark AbrahamMerge release-4-6 into release-5-0
2015-06-29 Erik LindahlFix bug removing multiple dihedrals in main rtp entries
2015-06-29 Szilard PallFix CUDA inter-stream synchronization issue
2015-06-27 Erik LindahlFix single-prec. softcore issue in 4.6 branch
2015-06-26 Berk HessFixed Verlet buffer issue with 2-wide SIMD
2015-06-26 Mark AbrahamMerge release-4-6 into release-5-0
2015-06-26 Erik LindahlFix buffer size issues in string database
2015-06-26 Mark AbrahamFix mdrun -confout sometimes affecting final .edr frame
2015-06-25 Erik LindahlFix edr appending and exact continuation
2015-06-25 Erik LindahlFix binary exact continuation for trajectories
2015-06-24 Mark AbrahamMerge release-4-6 into release-5-0
2015-06-24 Erik LindahlAvoid accessing hackblocks for x2top
2015-06-23 Erik LindahlRemoved buggy -smooth hack in hbond module
2015-06-22 Berk HessFix g_energy average/RMSD bug
2015-06-22 Erik LindahlUse MPI_THREAD_FUNNELED when available
2015-06-22 Erik LindahlFix segfault in random access XTC searching
2015-06-22 Erik LindahlFix argument order error for g_rmsdist
2015-06-22 Erik LindahlFix gro errors with PDB insertion codes
2015-06-20 Erik LindahlUpdated docs for g_gyrate
2015-06-20 Erik LindahlFix potential buffer overflow in pdb2gmx
2015-06-20 Erik LindahlDisallow infinite epsilon with PME or GB.
2015-06-20 Erik LindahlRemove GMX_MAX_MPI_THREADS
2015-06-20 Erik LindahlFix reproducibility bug in fft5d
2015-06-20 Erik LindahlHandle multidir/multisim with single argument correctly
2015-06-19 Erik LindahlFix incorrect shift with g_density -center
2015-06-16 Mark AbrahamFix pairs_nb not recognized as part of moleculetype
2015-06-11 Mark AbrahamMerge "Merge branch release-4-6 into release-5-0" into...
2015-06-09 Mark AbrahamDocument limitations of trjconv -dump
2015-06-09 Mark AbrahamMerge branch release-4-6 into release-5-0
2015-06-08 Szilard Palladd last two GROMACS paper citations
2015-06-06 Roland SchulzUse stat to check that paths are equivalent
2015-06-05 Berk HessDon't use PME ranks with GPUs and -npme=-1
2015-05-30 Roland SchulzWork-around for ICC 15 on Phi
2015-05-26 Mark AbrahamFix use of hard-coded temporary filename
2015-05-23 Mark AbrahamFix misuse of gmx_simd_check_and_reset_overflow
2015-05-22 Teemu MurtolaAvoid crash with empty reference for 'same as' selection
2015-05-20 Teemu MurtolaFix handling of real-valued 'to' selection ranges
2015-05-16 Mark AbrahamSuppress GCC5 warnings with internal Boost
2015-05-15 Szilard PallAssert the size of non-bonded GPU work units
2015-05-14 Mark AbrahamFix own-FFTW build
2015-05-14 Szilard PallMerge release-4-6 into release-5-0
2015-05-13 Berk HessFixed CUDA error with empty domains
2015-05-13 Berk HessFix segv in g_covar
2015-05-12 Mark AbrahamFix uninitialized fields in grompp t_state
2015-05-11 Mark AbrahamWork around gcc 5 warnings with Google Test
2015-05-06 Mark AbrahamFixed recently-introduced couple-lambda warning message
2015-05-06 Szilárd PállMerge "Merge release-4-6 into release-5-0" into release-5-0
2015-05-05 Mark AbrahamMerge release-4-6 into release-5-0
2015-05-05 Teemu MurtolaAvoid rounding errors affecting results in one test
2015-05-05 Justin LemkulFix for trjconv preserving box dimensions.
2015-05-04 Berk HessFixed GPU non-local F copy local conditional
2015-04-30 Olivier FisetteFix error handling in gmx_tmpnam
2015-04-30 Michael ShirtsFix for rarely occuring replica exchange error.
2015-04-28 Berk HessRe-enabled FMA for AVX-128-FMA
2015-04-17 Berk HessCorrect -ntmpi auto for intel nehalem and older
2015-04-09 David van der SpoelClarified comments for time-dependent electric fields.
2015-04-08 David van der SpoelFixed incorrect output of gb_algorith as sa_algorithm.
2015-03-19 Mark AbrahamMade error message more generic
2015-03-05 Mark AbrahamFix Andersen thermostats
2015-02-14 Erik Marklundgmx hbond no longer removes PBC when none is present
2015-02-12 Roland SchulzMerge release-4-6 into release-5-0
2015-02-12 Berk HessRe-fixed PME bug with high OpenMP thread count
2015-02-04 Berk HessCorrect CUDA kernel energy flag
2015-02-02 Mark AbrahamAvoid near-silent generation of zero energies
2015-02-02 Mark AbrahamFix use of simd.h
2015-01-21 Berk HessCorrected RDTSCP warning text
2015-01-15 Berk HessFix allocation issue with VV integrator
2015-01-14 Mark AbrahamFix and suppress warnings on BlueGene/Q
2015-01-08 Mark AbrahamHandle ivec* correctly in DD error message
2014-12-22 Berk HessFixed pbc=xy + 2 walls + Verlet scheme
2014-12-22 Berk HessFix bug FE + GPU + 2/3D domain decomposition
2014-12-15 Mark AbrahamMerge "Merge release-4-6 into release-5-0" into release-5-0
2014-12-11 Mark AbrahamMerge release-4-6 into release-5-0
2014-12-11 Berk HessAdded grompp error for pulling to negative distance
2014-12-10 Szilard PallFix nstep command line override print
2014-12-09 Berk HessFix recent bug with trilinic 1D DD
2014-12-09 Carsten KutznerMake tune_pme understand the "-nsteps" option. Fixes...
2014-12-08 Berk HessFixed pull coord init with rate!=0, t_start!=0
2014-12-08 Mark AbrahamFix group-scheme bug with changing LJ parameters in FE
2014-12-08 Berk HessAdded PBC note to comm-mode=angular warning
2014-12-05 Berk HessClarified grompp pull error messages
2014-12-05 Berk HessAvoid race on dvdl with Verlet+OpenMP+LINCS+FE+VV
2014-12-01 Berk HessAdded warning for unnecessary soft-core
2014-11-27 Mark AbrahamRemove use of interaction_mask_indices on BG/Q
2014-11-27 Mark AbrahamMerge branch release-4-6 into release-5-0
2014-11-26 Ake SandgrenFix problem with mixed affinity mask on different nodes.
2014-11-26 Berk HessFixed triclinic 1xNx1 domain decomposition
2014-11-25 Berk HessFixed twin-range + freeze + constraints
2014-11-24 Berk HessAvoid NaN in rlist buffer calculation
2014-11-24 Magnus LundborgWhen writing TNG the input must contain molecule data.
2014-11-24 David van der SpoelAdded warnings for ewald-geometry and surface-epsilon
2014-11-12 Berk HessCorrected parameter for sorting on search grid
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