Rename files to follow style

diff --git a/docs/doxygen/lib/mdmodules.md b/docs/doxygen/lib/mdmodules.md
index f0f36441d63f744326ed78bdaa11f1899eecb896..f3c7be022c3647922828a5e3adb4f9e16b217ed0 100644 (file)
--- a/docs/doxygen/lib/mdmodules.md
+++ b/docs/doxygen/lib/mdmodules.md
@@ -162,7 +162,7 @@ and local atom sets by subscribing to callback functions.
 To include a notification for your module
 
 * Add the function signature for the callback function to the
-  `MDModulesNotifiers` in `mdmodulenotification.h`,
+  `MDModulesNotifiers` in `mdmodulesnotifiers.h`,
 
   ```C++
     BuildMDModulesNotifier<...,

diff --git a/src/gromacs/applied_forces/densityfitting/densityfitting.cpp b/src/gromacs/applied_forces/densityfitting/densityfitting.cpp
index ed14140132389de0bb02bb238731ae6ab1dbb97e..af6af7678a6f2c9272455b311174e0d26efea7d0 100644 (file)
--- a/src/gromacs/applied_forces/densityfitting/densityfitting.cpp
+++ b/src/gromacs/applied_forces/densityfitting/densityfitting.cpp
@@ -56,7 +56,7 @@
 #include "gromacs/utility/classhelpers.h"
 #include "gromacs/utility/exceptions.h"
 #include "gromacs/utility/keyvaluetreebuilder.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 
 #include "densityfittingforceprovider.h"
 #include "densityfittingoptions.h"

diff --git a/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp b/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp
index a008212c19f5057fba9a32f90a72955822472deb..b7693599fec0348729fb85874d49aca391d13404 100644 (file)
--- a/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp
+++ b/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2019,2020, by the GROMACS development team, led by
+ * Copyright (c) 2019,2020,2021, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -52,7 +52,7 @@
 #include "gromacs/utility/exceptions.h"
 #include "gromacs/utility/keyvaluetreebuilder.h"
 #include "gromacs/utility/keyvaluetreetransform.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/strconvert.h"
 
 #include "densityfittingamplitudelookup.h"

diff --git a/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp b/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp
index 8ceca2f9140630981156385070e1995bfaa08511..36e6e3a1e9633935020d2ef88428b7b4c8db3aca 100644 (file)
--- a/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp
+++ b/src/gromacs/applied_forces/densityfitting/tests/densityfitting.cpp
@@ -1,7 +1,7 @@
 /*
  * This file is part of the GROMACS molecular simulation package.
  *
- * Copyright (c) 2019,2020, by the GROMACS development team, led by
+ * Copyright (c) 2019,2020,2021, by the GROMACS development team, led by
  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
  * and including many others, as listed in the AUTHORS file in the
  * top-level source directory and at http://www.gromacs.org.
@@ -58,7 +58,7 @@
 #include "gromacs/options/treesupport.h"
 #include "gromacs/utility/keyvaluetreebuilder.h"
 #include "gromacs/utility/keyvaluetreetransform.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/real.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/stringcompare.h"

diff --git a/src/gromacs/fileio/checkpoint.cpp b/src/gromacs/fileio/checkpoint.cpp
index 18dc33422e64834c3cbaadb3e54a39dd4a184ab9..6ba495992db560dfc6460b665d6fabb4e83ca430 100644 (file)
--- a/src/gromacs/fileio/checkpoint.cpp
+++ b/src/gromacs/fileio/checkpoint.cpp
@@ -85,7 +85,7 @@
 #include "gromacs/utility/keyvaluetree.h"
 #include "gromacs/utility/keyvaluetreebuilder.h"
 #include "gromacs/utility/keyvaluetreeserializer.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/programcontext.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/sysinfo.h"

diff --git a/src/gromacs/gmxpreprocess/grompp.cpp b/src/gromacs/gmxpreprocess/grompp.cpp
index 2f10d3b3649bee288bcd02526f95be06b158b74e..c8faf6d05b9b697207a2ff50e6383ea3655b26f3 100644 (file)
--- a/src/gromacs/gmxpreprocess/grompp.cpp
+++ b/src/gromacs/gmxpreprocess/grompp.cpp
@@ -107,7 +107,7 @@
 #include "gromacs/utility/listoflists.h"
 #include "gromacs/utility/logger.h"
 #include "gromacs/utility/loggerbuilder.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/snprintf.h"
 

diff --git a/src/gromacs/gmxpreprocess/readir.cpp b/src/gromacs/gmxpreprocess/readir.cpp
index 1bdd33ebb5161638da1ff284e2237c7d1ccef464..24f78964b2c8fe62edac0cb8909c0c2542fb41fe 100644 (file)
--- a/src/gromacs/gmxpreprocess/readir.cpp
+++ b/src/gromacs/gmxpreprocess/readir.cpp
@@ -86,7 +86,7 @@
 #include "gromacs/utility/keyvaluetreebuilder.h"
 #include "gromacs/utility/keyvaluetreemdpwriter.h"
 #include "gromacs/utility/keyvaluetreetransform.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/strconvert.h"
 #include "gromacs/utility/stringcompare.h"

diff --git a/src/gromacs/mdlib/energyoutput.cpp b/src/gromacs/mdlib/energyoutput.cpp
index e736b2c5c0267b0e97ddcac56cfcfce2ba95aa17..1def84ec7b56e21dcbb0347cf2a19033feaac281 100644 (file)
--- a/src/gromacs/mdlib/energyoutput.cpp
+++ b/src/gromacs/mdlib/energyoutput.cpp
@@ -82,7 +82,7 @@
 #include "gromacs/utility/arraysize.h"
 #include "gromacs/utility/enumerationhelpers.h"
 #include "gromacs/utility/fatalerror.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/smalloc.h"
 #include "gromacs/utility/stringutil.h"
 

diff --git a/src/gromacs/mdlib/tests/energyoutput.cpp b/src/gromacs/mdlib/tests/energyoutput.cpp
index ec11ab68a8f7133016a78ce330670700ce7047bc..c60df687e74c9b26003ff86c116bd9834954ae6f 100644 (file)
--- a/src/gromacs/mdlib/tests/energyoutput.cpp
+++ b/src/gromacs/mdlib/tests/energyoutput.cpp
@@ -68,7 +68,7 @@
 #include "gromacs/mdtypes/state.h"
 #include "gromacs/topology/topology.h"
 #include "gromacs/utility/cstringutil.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/stringutil.h"
 #include "gromacs/utility/textreader.h"
 #include "gromacs/utility/unique_cptr.h"

diff --git a/src/gromacs/mdrun/mdmodules.cpp b/src/gromacs/mdrun/mdmodules.cpp
index fabeb2f4efc1e8dc24fbc00b708e1ef39d06006b..0117d3aa9335af1760121167acec33a8ef63e39d 100644 (file)
--- a/src/gromacs/mdrun/mdmodules.cpp
+++ b/src/gromacs/mdrun/mdmodules.cpp
@@ -53,7 +53,7 @@
 #include "gromacs/utility/keyvaluetree.h"
 #include "gromacs/utility/keyvaluetreebuilder.h"
 #include "gromacs/utility/keyvaluetreetransform.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/smalloc.h"
 
 namespace gmx

diff --git a/src/gromacs/mdrun/runner.cpp b/src/gromacs/mdrun/runner.cpp
index e53d3c16c597eefc47527768dc427ee669a1986c..0c8a98250955db256bf0fe79b775103d1da5474f 100644 (file)
--- a/src/gromacs/mdrun/runner.cpp
+++ b/src/gromacs/mdrun/runner.cpp
@@ -161,7 +161,7 @@
 #include "gromacs/utility/keyvaluetree.h"
 #include "gromacs/utility/logger.h"
 #include "gromacs/utility/loggerbuilder.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 #include "gromacs/utility/physicalnodecommunicator.h"
 #include "gromacs/utility/pleasecite.h"
 #include "gromacs/utility/programcontext.h"

diff --git a/src/gromacs/mdrun/simulationinput.h b/src/gromacs/mdrun/simulationinput.h
index 06d8331d105d8cea75db767ce1feab8c04d4abb6..9c7d225aa0acfa99f00880d717410cf166bd2d17 100644 (file)
--- a/src/gromacs/mdrun/simulationinput.h
+++ b/src/gromacs/mdrun/simulationinput.h
@@ -48,7 +48,7 @@
 
 #include "gromacs/mdrun/simulationinputhandle.h"
 #include "gromacs/mdtypes/checkpointdata.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 
 // Forward declarations for types from other modules that are opaque to the public API.
 // TODO: Document the sources of these symbols or import a (self-documenting) fwd header.

diff --git a/src/gromacs/mdrun/simulatorbuilder.cpp b/src/gromacs/mdrun/simulatorbuilder.cpp
index 1f8620c32a0f0163d7eb05d41301a33d3c951af2..90b87f703d6b119a1ef4225180c44c8b5d1277f5 100644 (file)
--- a/src/gromacs/mdrun/simulatorbuilder.cpp
+++ b/src/gromacs/mdrun/simulatorbuilder.cpp
@@ -51,7 +51,7 @@
 #include "gromacs/mdtypes/state.h"
 #include "gromacs/modularsimulator/modularsimulator.h"
 #include "gromacs/topology/topology.h"
-#include "gromacs/utility/mdmodulenotification.h"
+#include "gromacs/utility/mdmodulesnotifiers.h"
 
 #include "legacysimulator.h"
 #include "membedholder.h"

diff --git a/src/gromacs/utility/mdmodulenotification-impl.h b/src/gromacs/utility/mdmodulesnotifier.h
similarity index 98%
rename from src/gromacs/utility/mdmodulenotification-impl.h
rename to src/gromacs/utility/mdmodulesnotifier.h
index d48813210537749386b73c520f9725812e8b36fc..4f080af8e5bec000cdc44dd44bb170d3339a5504 100644 (file)
--- a/src/gromacs/utility/mdmodulenotification-impl.h
+++ b/src/gromacs/utility/mdmodulesnotifier.h
@@ -34,15 +34,15 @@
  */
 /*! \libinternal \file
  * \brief
- * Declares gmx::MDModulesNotifier.
+ * Declares gmx::MDModulesNotifier and builder.
  *
  * \author Christian Blau <blau@kth.se>
  * \inlibraryapi
  * \ingroup module_utility
  */
 
-#ifndef GMX_UTILITY_MDMODULENOTIFICATION_IMPL_H
-#define GMX_UTILITY_MDMODULENOTIFICATION_IMPL_H
+#ifndef GMX_UTILITY_MDMODULESNOTIFIER_H
+#define GMX_UTILITY_MDMODULESNOTIFIER_H
 
 #include <functional>
 #include <vector>

diff --git a/src/gromacs/utility/mdmodulenotification.h b/src/gromacs/utility/mdmodulesnotifiers.h
similarity index 98%
rename from src/gromacs/utility/mdmodulenotification.h
rename to src/gromacs/utility/mdmodulesnotifiers.h
index 88491e378e35020c3eed3851c37a30a4f0e2d68c..147de9235a3aff188a0cee9248166327087518de 100644 (file)
--- a/src/gromacs/utility/mdmodulenotification.h
+++ b/src/gromacs/utility/mdmodulesnotifiers.h
@@ -41,13 +41,13 @@
  * \ingroup module_utility
  */
 
-#ifndef GMX_UTILITY_MDMODULENOTIFICATION_H
-#define GMX_UTILITY_MDMODULENOTIFICATION_H
+#ifndef GMX_UTILITY_MDMODULESNOTIFIERS_H
+#define GMX_UTILITY_MDMODULESNOTIFIERS_H
 
 #include <string>
 #include <vector>
 
-#include "gromacs/utility/mdmodulenotification-impl.h"
+#include "gromacs/utility/mdmodulesnotifier.h"
 
 struct t_commrec;
 struct gmx_mtop_t;

diff --git a/src/gromacs/utility/tests/CMakeLists.txt b/src/gromacs/utility/tests/CMakeLists.txt
index 856a949540ac8f4da493f465103102dcc2784ff0..7532e3c008214976783aaf3fef819efb2da2f415 100644 (file)
--- a/src/gromacs/utility/tests/CMakeLists.txt
+++ b/src/gromacs/utility/tests/CMakeLists.txt
@@ -47,7 +47,7 @@ gmx_add_unit_test(UtilityUnitTests utility-test
         keyvaluetreetransform.cpp
         listoflists.cpp
         logger.cpp
-        mdmodulenotification-impl.cpp
+        mdmodulesnotifier.cpp
         path.cpp
         physicalnodecommunicator.cpp
         range.cpp

diff --git a/src/gromacs/utility/tests/mdmodulenotification-impl.cpp b/src/gromacs/utility/tests/mdmodulesnotifier.cpp
similarity index 98%
rename from src/gromacs/utility/tests/mdmodulenotification-impl.cpp
rename to src/gromacs/utility/tests/mdmodulesnotifier.cpp
index 1e7515a5b6f8f6f2bf1f2da01bed15d85431be89..1fc550b59ec7200d11c34aeb566e699882263f8a 100644 (file)
--- a/src/gromacs/utility/tests/mdmodulenotification-impl.cpp
+++ b/src/gromacs/utility/tests/mdmodulesnotifier.cpp
@@ -41,7 +41,7 @@
  */
 #include "gmxpre.h"
 
-#include "gromacs/utility/mdmodulenotification-impl.h"
+#include "gromacs/utility/mdmodulesnotifier.h"
 
 #include <gmock/gmock.h>