# Mix-in helper job definitions of general utility.
- local: '/admin/gitlab-ci/global.gitlab-ci.yml'
# Various composable job definitions.
- - local: '/admin/ci-templates/.build-template.yml'
- local: '/admin/ci-templates/.gcc-before-script.yml'
- local: '/admin/ci-templates/.gcc-build-template.yml'
- local: '/admin/ci-templates/.clang-build-template.yml'
+++ /dev/null
-.configure-build-template:
- # Docker image uploaded to dockerhub by user eriklindahl
- # TODO: Get DockerFile for admin/dockerfiles
- stage: configure-build
- image: biophysics/gcc-gromacs
- variables:
- KUBERNETES_CPU_LIMIT: 1
- KUBERNETES_CPU_REQUEST: 1
- KUBERNETES_MEMORY_LIMIT: 2Gi
- CMAKE_COMPILER_SCRIPT: ""
- CMAKE_EXTRA_OPTIONS: ""
- CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=AUTO"
- CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=ON"
- CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
- CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=Debug"
- CMAKE_GPU_OPTIONS: "-DGMX_GPU=OFF"
- CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=OFF"
-
- script:
- - echo $CMAKE_COMPILER_SCRIPT
- - echo $CMAKE_EXTRA_OPTIONS
- - echo $CMAKE_SIMD_OPTIONS
- - echo $CMAKE_GPU_OPTIONS
- - echo $CMAKE_MPI_OPTIONS
- - echo $CMAKE_PRECISION_OPTIONS
- - echo $CMAKE_BUILD_TYPE_OPTIONS
- - echo $CMAKE_GMXAPI_OPTIONS
- - if [[ -d $BUILD_DIR ]] ; then
- rm -rf $BUILD_DIR && mkdir $BUILD_DIR ;
- else
- echo "Preparing new build directory" ;
- mkdir $BUILD_DIR ;
- fi
- - cd $BUILD_DIR
- - cmake ..
- -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
- $CMAKE_COMPILER_SCRIPT
- $CMAKE_EXTRA_OPTIONS
- $CMAKE_SIMD_OPTIONS
- $CMAKE_MPI_OPTIONS
- $CMAKE_PRECISION_OPTIONS
- $CMAKE_BUILD_TYPE_OPTIONS
- $CMAKE_GPU_OPTIONS
- $CMAKE_GMXAPI_OPTIONS
- -DCMAKE_INSTALL_PREFIX=../$INSTALL_DIR -DGMX_COMPILER_WARNINGS=ON
- 2>&1 | tee cmakeLog.log
- - awk '/CMake Warning/,/^--|^$/' cmakeLog.log | tee cmakeErrors.log
- - if [ -s cmakeErrors.log ] ; then echo "Found CMake warning while processing build"; cat cmakeErrors.log ; exit 1; fi
- - cd ..
- artifacts:
- when: always
- paths:
- - $BUILD_DIR
-
-.configure-build-release-template:
- # Dockerfiles are from dockerhub, user eriklindahl
- # image in admin/dockerimages/ci-docs-py27
- stage: release-configure
- image: biophysics/gcc-gromacs
- variables:
- KUBERNETES_CPU_LIMIT: 1
- KUBERNETES_CPU_REQUEST: 1
- KUBERNETES_MEMORY_LIMIT: 2Gi
- CMAKE_COMPILER_SCRIPT: ""
- CMAKE_EXTRA_OPTIONS: ""
- CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=AUTO"
- CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=ON"
- CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
- CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=RelWithAssert"
- CMAKE_GPU_OPTIONS: "-DGMX_GPU=OFF"
- CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=OFF"
- RELEASE_BUILD_DIR: release-builds
- RELEASE_SOURCE: release-source-from-tarball
- RELEASE_REGRESSIONTESTS: release-regressiontests-from-tarball
-
- only:
- refs:
- - web
- - schedules
- - triggers
- variables:
- - $GROMACS_RELEASE
- script:
- - VERSION=`cat version.json |
- python3 -c "import json,sys; print(json.load(sys.stdin)['version'])"`
- - if [[ $GROMACS_RELEASE != "true" ]] ; then
- VERSION=$VERSION-dev ;
- fi
- - SOURCENAME=gromacs-$VERSION
- - SOURCETARBALL=$SOURCENAME.tar.gz
- - REGTESTNAME=regressiontests-$VERSION
- - REGTESTTARBALL=$REGTESTNAME.tar.gz
- - echo "$SOURCETARBALL"
- - echo "$REGTESTTARBALL"
- - RELEASE_TARBALLS=release-tarballs
- - rm -rf $RELEASE_TARBALLS $RELEASE_SOURCE $RELEASE_REGRESSIONTESTS && mkdir $RELEASE_TARBALLS
- - mv $SOURCETARBALL $RELEASE_TARBALLS
- - mv $REGTESTTARBALL $RELEASE_TARBALLS
- - cd $RELEASE_TARBALLS
-# We rename the source and regressiontest directories
-# to have names for them that don't change for different versions.
- - tar -xf $SOURCETARBALL
- - mv $SOURCENAME ../$RELEASE_SOURCE
- - tar -xf $REGTESTTARBALL
- - mv $REGTESTNAME ../$RELEASE_REGRESSIONTESTS
- - rm $SOURCETARBALL $REGTESTTARBALL
- - cd ..
- - echo $CMAKE_COMPILER_SCRIPT
- - echo $CMAKE_EXTRA_OPTIONS
- - echo $CMAKE_SIMD_OPTIONS
- - echo $CMAKE_GPU_OPTIONS
- - echo $CMAKE_MPI_OPTIONS
- - echo $CMAKE_PRECISION_OPTIONS
- - echo $CMAKE_BUILD_TYPE_OPTIONS
- - echo $CMAKE_GMXAPI_OPTIONS
- - if [[ -d $RELEASE_BUILD_DIR ]] ; then
- echo "Cleaning up build directory" ;
- rm -rf $RELEASE_BUILD_DIR && mkdir $RELEASE_BUILD_DIR ;
- else
- echo "Preparing new build directory" ;
- mkdir $RELEASE_BUILD_DIR ;
- fi
- - cd $RELEASE_BUILD_DIR
- - cmake ../$RELEASE_SOURCE/
- -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
- $CMAKE_COMPILER_SCRIPT
- $CMAKE_EXTRA_OPTIONS
- $CMAKE_SIMD_OPTIONS
- $CMAKE_MPI_OPTIONS
- $CMAKE_PRECISION_OPTIONS
- $CMAKE_BUILD_TYPE_OPTIONS
- $CMAKE_GPU_OPTIONS
- $CMAKE_GMXAPI_OPTIONS
- "-DREGRESSIONTEST_PATH=../$RELEASE_REGRESSIONTESTS"
- -DCMAKE_INSTALL_PREFIX=../$INSTALL_DIR -DGMX_COMPILER_WARNINGS=ON
- 2>&1 | tee cmakeLog.log
- - awk '/CMake Warning/,/^--|^$/' cmakeLog.log | tee cmakeErrors.log
- - if [ -s cmakeErrors.log ] ; then echo "Found CMake warning while processing build"; cat cmakeErrors.log ; exit 1; fi
- - cd ..
- artifacts:
- when: always
- paths:
- - $RELEASE_BUILD_DIR
- - $RELEASE_REGRESSIONTESTS
- - $RELEASE_SOURCE
-
-.binary-build-template:
- # Dockerfiles are from dockerhub, user eriklindahl
- # image in admin/dockerimages/ci-docs-py27
- stage: build
- image: biophysics/gcc-gromacs
- variables:
-
- script:
- - cd $BUILD_DIR
- - cmake --build . -- -j8 2>&1 | tee buildLogFile.log
- - cmake --build . --target tests -- -j8 2>&1 | tee testBuildLogFile.log
- - awk '/warning/,/warning.*generated|^$/' buildLogFile.log testBuildLogFile.log
- | grep -v "CMake" | tee buildErrors.log || true
- - grep "cannot be built" buildLogFile.log testBuildLogFile.log | tee -a buildErrors.log || true
- - cmake --build . --target install 2>&1 | tee installBuildLogFile.log
- - if [ -s buildErrors.log ] ; then echo "Found compiler warning during build"; cat buildErrors.log; exit 1; fi
- - cd ..
- artifacts:
- when: always
- paths:
- - $BUILD_DIR
- - $INSTALL_DIR/
-
-# Right now we need to use an ugly hack to move the original build directory
-# and the ccache files out of the build archive, as it is not possible to use
-# the custom build directory due to https://gitlab.com/gitlab-org/gitlab-runner/issues/4203
-# As soon as this is resolved we should use the separate build directories instead of
-# manually hacking things. TODO
-# Redmine #3361
-.archive-build-template:
- # Dockerfiles are from dockerhub, user eriklindahl
- image: gromacs/ci-docs-clang:master
- variables:
- KUBERNETES_CPU_LIMIT: 4
- KUBERNETES_CPU_REQUEST: 2
- KUBERNETES_MEMORY_LIMIT: 4Gi
- script:
- - rm -rf gromacs*tar.gz
- - cd $BUILD_DIR
- - cmake --build . --target gmx -- -j4 2>&1 | tee buildLogFile.log
- - cmake --build . --target man -- -j4 2>&1 | tee manBuildLogFile.log
- - cmake --build . --target completion -- -j4 2>&1 | tee completionBuildLogFile.log
- - cmake --build . --target install-guide -- -j4 2>&1 | tee installGuideBuildLogFile.log
- - cmake --build . --target reference_checksum -- -j4 2>&1 | tee checksumBuildLogFile.log
- - cmake --build . --target package_source -- -j4 2>&1 | tee packageBuildLogFile.log
- - awk '/warning/,/warning.*generated|^$/' buildLogFile.log manBuildLogFile.log
- completionBuildLogFile.log installGuideBuildLogFile.log checksumBuildLogFile.log
- packageBuildLogFile.log | grep -v "CMake" | tee buildErrors.log || true
- - grep "cannot be built" buildLogFile.log manBuildLogFile.log
- completionBuildLogFile.log installGuideBuildLogFile.log checksumBuildLogFile.log
- packageBuildLogFile.log | tee -a buildErrors.log || true
- - if [ -s buildErrors.log ] ; then echo "Found warnings during build"; cat buildErrors.log; exit 1; fi
- - mv gromacs*tar.gz ..
- - cd ..
- # ugly hack begins here
- - mkdir tempdir
- - SOURCETARBALL=`ls gromacs*tar.gz`
- - mv $SOURCETARBALL tempdir
- - cd tempdir
- - tar -xf $SOURCETARBALL
- - rm -rf gromacs-*/$BUILD_DIR
- - tar -c --gzip -f $SOURCETARBALL gromacs-*/
- - mv $SOURCETARBALL ..
- - cd ..
- - rm -rf tempdir
- # Hack ends here
- artifacts:
- when: always
- expire_in: 1 week
- paths:
- - $BUILD_DIR/*log
- - gromacs*tar.gz
-
-
-.simple-build-template:
- # Docker images are from dockerhub, user eriklindahl
- stage: pre-build
- image: biophysics/gcc-gromacs
- variables:
- KUBERNETES_CPU_LIMIT: 8
- KUBERNETES_CPU_REQUEST: 4
- KUBERNETES_MEMORY_LIMIT: 8Gi
- CMAKE_COMPILER_SCRIPT: ""
- CMAKE_EXTRA_OPTIONS: ""
- CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=None"
- CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=ON"
- CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
- CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=Debug"
- CMAKE_GPU_OPTIONS: "-DGMX_GPU=OFF"
- CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=OFF"
-
- script:
- - echo $CMAKE_COMPILER_SCRIPT
- - echo $CMAKE_EXTRA_OPTIONS
- - echo $CMAKE_SIMD_OPTIONS
- - echo $CMAKE_GPU_OPTIONS
- - echo $CMAKE_MPI_OPTIONS
- - echo $CMAKE_PRECISION_OPTIONS
- - echo $CMAKE_BUILD_TYPE_OPTIONS
- - echo $CMAKE_GMXAPI_OPTIONS
- - if [[ -d $BUILD_DIR ]] ; then
- echo "Cleaning up build directory" ;
- rm -rf $BUILD_DIR && mkdir $BUILD_DIR ;
- else
- echo "Preparing new build directory" ;
- mkdir $BUILD_DIR ;
- fi
- - cd $BUILD_DIR
- - cmake ..
- -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
- $CMAKE_COMPILER_SCRIPT
- $CMAKE_EXTRA_OPTIONS
- $CMAKE_SIMD_OPTIONS
- $CMAKE_MPI_OPTIONS
- $CMAKE_PRECISION_OPTIONS
- $CMAKE_BUILD_TYPE_OPTIONS
- $CMAKE_GPU_OPTIONS
- $CMAKE_GMXAPI_OPTIONS
- -DCMAKE_INSTALL_PREFIX=../$INSTALL_DIR -DGMX_COMPILER_WARNINGS=ON
- 2>&1 | tee cmakeLog.log
- - awk '/CMake Warning/,/^--|^$/' cmakeLog.log | tee cmakeErrors.log
- - if [ -s cmakeErrors.log ] ; then echo "Found CMake warning while processing build"; cat cmakeErrors.log ; exit 1; fi
- - cmake --build . -- -j8 2>&1 | tee buildLogFile.log
- - cmake --build . --target tests -- -j8 2>&1 | tee testBuildLogFile.log
- - awk '/warning/,/warning.*generated|^$/' buildLogFile.log testBuildLogFile.log
- | grep -v "CMake" | tee buildErrors.log || true
- - grep "cannot be built" buildLogFile.log testBuildLogFile.log | tee -a buildErrors.log || true
- - cmake --build . --target install 2>&1 | tee installBuildLogFile.log
- - if [ -s buildErrors.log ] ; then echo "Found compiler warning during build"; cat buildErrors.log; exit 1; fi
- - ctest -D ExperimentalTest --output-on-failure | tee ctestLog.log || true
- - awk '/The following tests FAILED/,/^Errors while running CTest|^$/'
- ctestLog.log | tee ctestErrors.log
- - xsltproc scripts/CTest2JUnit.xsl Testing/`head -n 1 < Testing/TAG`/Test.xml > JUnitTestResults.xml
- - if [ -s ctestErrors.log ] ; then
- echo "Error during running ctest";
- exit 1;
- fi
- - cd ..
- artifacts:
- reports:
- junit: $BUILD_DIR/JUnitTestResults.xml
- paths:
- - $BUILD_DIR/*log
- when: always
- expire_in: 1 week
CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF
+# Right now we need to use an ugly hack to move the original build directory
+# and the ccache files out of the build archive, as it is not possible to use
+# the custom build directory due to https://gitlab.com/gitlab-org/gitlab-runner/issues/4203
+# As soon as this is resolved we should use the separate build directories instead of
+# manually hacking things. TODO
+# Redmine #3361
+.archive-build-template:
+ # Dockerfiles are from dockerhub, user eriklindahl
+ image: gromacs/ci-docs-clang:master
+ variables:
+ KUBERNETES_CPU_LIMIT: 4
+ KUBERNETES_CPU_REQUEST: 2
+ KUBERNETES_MEMORY_LIMIT: 4Gi
+ script:
+ - rm -rf gromacs*tar.gz
+ - cd $BUILD_DIR
+ - cmake --build . --target gmx -- -j4 2>&1 | tee buildLogFile.log
+ - cmake --build . --target man -- -j4 2>&1 | tee manBuildLogFile.log
+ - cmake --build . --target completion -- -j4 2>&1 | tee completionBuildLogFile.log
+ - cmake --build . --target install-guide -- -j4 2>&1 | tee installGuideBuildLogFile.log
+ - cmake --build . --target reference_checksum -- -j4 2>&1 | tee checksumBuildLogFile.log
+ - cmake --build . --target package_source -- -j4 2>&1 | tee packageBuildLogFile.log
+ - awk '/warning/,/warning.*generated|^$/' buildLogFile.log manBuildLogFile.log
+ completionBuildLogFile.log installGuideBuildLogFile.log checksumBuildLogFile.log
+ packageBuildLogFile.log | grep -v "CMake" | tee buildErrors.log || true
+ - grep "cannot be built" buildLogFile.log manBuildLogFile.log
+ completionBuildLogFile.log installGuideBuildLogFile.log checksumBuildLogFile.log
+ packageBuildLogFile.log | tee -a buildErrors.log || true
+ - if [ -s buildErrors.log ] ; then echo "Found warnings during build"; cat buildErrors.log; exit 1; fi
+ - mv gromacs*tar.gz ..
+ - cd ..
+ # ugly hack begins here
+ - mkdir tempdir
+ - SOURCETARBALL=`ls gromacs*tar.gz`
+ - mv $SOURCETARBALL tempdir
+ - cd tempdir
+ - tar -xf $SOURCETARBALL
+ - rm -rf gromacs-*/$BUILD_DIR
+ - tar -c --gzip -f $SOURCETARBALL gromacs-*/
+ - mv $SOURCETARBALL ..
+ - cd ..
+ - rm -rf tempdir
+ # Hack ends here
+ artifacts:
+ when: always
+ expire_in: 1 week
+ paths:
+ - $BUILD_DIR/*log
+ - gromacs*tar.gz
+
.build-archive:
extends:
- .build-extends-template
+
+.simple-build-template:
+ # Docker images are from dockerhub, user eriklindahl
+ stage: pre-build
+ image: biophysics/gcc-gromacs
+ variables:
+ KUBERNETES_CPU_LIMIT: 8
+ KUBERNETES_CPU_REQUEST: 4
+ KUBERNETES_MEMORY_LIMIT: 8Gi
+ CMAKE_COMPILER_SCRIPT: ""
+ CMAKE_EXTRA_OPTIONS: ""
+ CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=None"
+ CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=ON"
+ CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
+ CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=Debug"
+ CMAKE_GPU_OPTIONS: "-DGMX_GPU=OFF"
+ CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=OFF"
+
+ script:
+ - echo $CMAKE_COMPILER_SCRIPT
+ - echo $CMAKE_EXTRA_OPTIONS
+ - echo $CMAKE_SIMD_OPTIONS
+ - echo $CMAKE_GPU_OPTIONS
+ - echo $CMAKE_MPI_OPTIONS
+ - echo $CMAKE_PRECISION_OPTIONS
+ - echo $CMAKE_BUILD_TYPE_OPTIONS
+ - echo $CMAKE_GMXAPI_OPTIONS
+ - if [[ -d $BUILD_DIR ]] ; then
+ echo "Cleaning up build directory" ;
+ rm -rf $BUILD_DIR && mkdir $BUILD_DIR ;
+ else
+ echo "Preparing new build directory" ;
+ mkdir $BUILD_DIR ;
+ fi
+ - cd $BUILD_DIR
+ - cmake ..
+ -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
+ $CMAKE_COMPILER_SCRIPT
+ $CMAKE_EXTRA_OPTIONS
+ $CMAKE_SIMD_OPTIONS
+ $CMAKE_MPI_OPTIONS
+ $CMAKE_PRECISION_OPTIONS
+ $CMAKE_BUILD_TYPE_OPTIONS
+ $CMAKE_GPU_OPTIONS
+ $CMAKE_GMXAPI_OPTIONS
+ -DCMAKE_INSTALL_PREFIX=../$INSTALL_DIR -DGMX_COMPILER_WARNINGS=ON
+ 2>&1 | tee cmakeLog.log
+ - awk '/CMake Warning/,/^--|^$/' cmakeLog.log | tee cmakeErrors.log
+ - if [ -s cmakeErrors.log ] ; then echo "Found CMake warning while processing build"; cat cmakeErrors.log ; exit 1; fi
+ - cmake --build . -- -j8 2>&1 | tee buildLogFile.log
+ - cmake --build . --target tests -- -j8 2>&1 | tee testBuildLogFile.log
+ - awk '/warning/,/warning.*generated|^$/' buildLogFile.log testBuildLogFile.log
+ | grep -v "CMake" | tee buildErrors.log || true
+ - grep "cannot be built" buildLogFile.log testBuildLogFile.log | tee -a buildErrors.log || true
+ - cmake --build . --target install 2>&1 | tee installBuildLogFile.log
+ - if [ -s buildErrors.log ] ; then echo "Found compiler warning during build"; cat buildErrors.log; exit 1; fi
+ - ctest -D ExperimentalTest --output-on-failure | tee ctestLog.log || true
+ - awk '/The following tests FAILED/,/^Errors while running CTest|^$/'
+ ctestLog.log | tee ctestErrors.log
+ - xsltproc scripts/CTest2JUnit.xsl Testing/`head -n 1 < Testing/TAG`/Test.xml > JUnitTestResults.xml
+ - if [ -s ctestErrors.log ] ; then
+ echo "Error during running ctest";
+ exit 1;
+ fi
+ - cd ..
+ artifacts:
+ reports:
+ junit: $BUILD_DIR/JUnitTestResults.xml
+ paths:
+ - $BUILD_DIR/*log
+ when: always
+ expire_in: 1 week
+
# Initial build that always needs to pass before follow-up stages run
simple-build:
extends:
- $GROMACS_RELEASE
# Jobs running in first pre-build stage
+.configure-build-template:
+ # Docker image uploaded to dockerhub by user eriklindahl
+ # TODO: Get DockerFile for admin/dockerfiles
+ stage: configure-build
+ image: biophysics/gcc-gromacs
+ variables:
+ KUBERNETES_CPU_LIMIT: 1
+ KUBERNETES_CPU_REQUEST: 1
+ KUBERNETES_MEMORY_LIMIT: 2Gi
+ CMAKE_COMPILER_SCRIPT: ""
+ CMAKE_EXTRA_OPTIONS: ""
+ CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=AUTO"
+ CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=ON"
+ CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
+ CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=Debug"
+ CMAKE_GPU_OPTIONS: "-DGMX_GPU=OFF"
+ CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=OFF"
+
+ script:
+ - echo $CMAKE_COMPILER_SCRIPT
+ - echo $CMAKE_EXTRA_OPTIONS
+ - echo $CMAKE_SIMD_OPTIONS
+ - echo $CMAKE_GPU_OPTIONS
+ - echo $CMAKE_MPI_OPTIONS
+ - echo $CMAKE_PRECISION_OPTIONS
+ - echo $CMAKE_BUILD_TYPE_OPTIONS
+ - echo $CMAKE_GMXAPI_OPTIONS
+ - if [[ -d $BUILD_DIR ]] ; then
+ rm -rf $BUILD_DIR && mkdir $BUILD_DIR ;
+ else
+ echo "Preparing new build directory" ;
+ mkdir $BUILD_DIR ;
+ fi
+ - cd $BUILD_DIR
+ - cmake ..
+ -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
+ $CMAKE_COMPILER_SCRIPT
+ $CMAKE_EXTRA_OPTIONS
+ $CMAKE_SIMD_OPTIONS
+ $CMAKE_MPI_OPTIONS
+ $CMAKE_PRECISION_OPTIONS
+ $CMAKE_BUILD_TYPE_OPTIONS
+ $CMAKE_GPU_OPTIONS
+ $CMAKE_GMXAPI_OPTIONS
+ -DCMAKE_INSTALL_PREFIX=../$INSTALL_DIR -DGMX_COMPILER_WARNINGS=ON
+ 2>&1 | tee cmakeLog.log
+ - awk '/CMake Warning/,/^--|^$/' cmakeLog.log | tee cmakeErrors.log
+ - if [ -s cmakeErrors.log ] ; then echo "Found CMake warning while processing build"; cat cmakeErrors.log ; exit 1; fi
+ - cd ..
+ artifacts:
+ when: always
+ paths:
+ - $BUILD_DIR
+
+.configure-build-release-template:
+ # Dockerfiles are from dockerhub, user eriklindahl
+ # image in admin/dockerimages/ci-docs-py27
+ stage: release-configure
+ image: biophysics/gcc-gromacs
+ variables:
+ KUBERNETES_CPU_LIMIT: 1
+ KUBERNETES_CPU_REQUEST: 1
+ KUBERNETES_MEMORY_LIMIT: 2Gi
+ CMAKE_COMPILER_SCRIPT: ""
+ CMAKE_EXTRA_OPTIONS: ""
+ CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=AUTO"
+ CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=ON"
+ CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
+ CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=RelWithAssert"
+ CMAKE_GPU_OPTIONS: "-DGMX_GPU=OFF"
+ CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=OFF"
+ RELEASE_BUILD_DIR: release-builds
+ RELEASE_SOURCE: release-source-from-tarball
+ RELEASE_REGRESSIONTESTS: release-regressiontests-from-tarball
+
+ only:
+ refs:
+ - web
+ - schedules
+ - triggers
+ variables:
+ - $GROMACS_RELEASE
+ script:
+ - VERSION=`cat version.json |
+ python3 -c "import json,sys; print(json.load(sys.stdin)['version'])"`
+ - if [[ $GROMACS_RELEASE != "true" ]] ; then
+ VERSION=$VERSION-dev ;
+ fi
+ - SOURCENAME=gromacs-$VERSION
+ - SOURCETARBALL=$SOURCENAME.tar.gz
+ - REGTESTNAME=regressiontests-$VERSION
+ - REGTESTTARBALL=$REGTESTNAME.tar.gz
+ - echo "$SOURCETARBALL"
+ - echo "$REGTESTTARBALL"
+ - RELEASE_TARBALLS=release-tarballs
+ - rm -rf $RELEASE_TARBALLS $RELEASE_SOURCE $RELEASE_REGRESSIONTESTS && mkdir $RELEASE_TARBALLS
+ - mv $SOURCETARBALL $RELEASE_TARBALLS
+ - mv $REGTESTTARBALL $RELEASE_TARBALLS
+ - cd $RELEASE_TARBALLS
+ # We rename the source and regressiontest directories
+ # to have names for them that don't change for different versions.
+ - tar -xf $SOURCETARBALL
+ - mv $SOURCENAME ../$RELEASE_SOURCE
+ - tar -xf $REGTESTTARBALL
+ - mv $REGTESTNAME ../$RELEASE_REGRESSIONTESTS
+ - rm $SOURCETARBALL $REGTESTTARBALL
+ - cd ..
+ - echo $CMAKE_COMPILER_SCRIPT
+ - echo $CMAKE_EXTRA_OPTIONS
+ - echo $CMAKE_SIMD_OPTIONS
+ - echo $CMAKE_GPU_OPTIONS
+ - echo $CMAKE_MPI_OPTIONS
+ - echo $CMAKE_PRECISION_OPTIONS
+ - echo $CMAKE_BUILD_TYPE_OPTIONS
+ - echo $CMAKE_GMXAPI_OPTIONS
+ - if [[ -d $RELEASE_BUILD_DIR ]] ; then
+ echo "Cleaning up build directory" ;
+ rm -rf $RELEASE_BUILD_DIR && mkdir $RELEASE_BUILD_DIR ;
+ else
+ echo "Preparing new build directory" ;
+ mkdir $RELEASE_BUILD_DIR ;
+ fi
+ - cd $RELEASE_BUILD_DIR
+ - cmake ../$RELEASE_SOURCE/
+ -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
+ $CMAKE_COMPILER_SCRIPT
+ $CMAKE_EXTRA_OPTIONS
+ $CMAKE_SIMD_OPTIONS
+ $CMAKE_MPI_OPTIONS
+ $CMAKE_PRECISION_OPTIONS
+ $CMAKE_BUILD_TYPE_OPTIONS
+ $CMAKE_GPU_OPTIONS
+ $CMAKE_GMXAPI_OPTIONS
+ "-DREGRESSIONTEST_PATH=../$RELEASE_REGRESSIONTESTS"
+ -DCMAKE_INSTALL_PREFIX=../$INSTALL_DIR -DGMX_COMPILER_WARNINGS=ON
+ 2>&1 | tee cmakeLog.log
+ - awk '/CMake Warning/,/^--|^$/' cmakeLog.log | tee cmakeErrors.log
+ - if [ -s cmakeErrors.log ] ; then echo "Found CMake warning while processing build"; cat cmakeErrors.log ; exit 1; fi
+ - cd ..
+ artifacts:
+ when: always
+ paths:
+ - $RELEASE_BUILD_DIR
+ - $RELEASE_REGRESSIONTESTS
+ - $RELEASE_SOURCE
.configure-extends-template:
extends:
# Jobs running during build stage
+.binary-build-template:
+ # Dockerfiles are from dockerhub, user eriklindahl
+ # image in admin/dockerimages/ci-docs-py27
+ stage: build
+ image: biophysics/gcc-gromacs
+ variables:
+
+ script:
+ - cd $BUILD_DIR
+ - cmake --build . -- -j8 2>&1 | tee buildLogFile.log
+ - cmake --build . --target tests -- -j8 2>&1 | tee testBuildLogFile.log
+ - awk '/warning/,/warning.*generated|^$/' buildLogFile.log testBuildLogFile.log
+ | grep -v "CMake" | tee buildErrors.log || true
+ - grep "cannot be built" buildLogFile.log testBuildLogFile.log | tee -a buildErrors.log || true
+ - cmake --build . --target install 2>&1 | tee installBuildLogFile.log
+ - if [ -s buildErrors.log ] ; then echo "Found compiler warning during build"; cat buildErrors.log; exit 1; fi
+ - cd ..
+ artifacts:
+ when: always
+ paths:
+ - $BUILD_DIR
+ - $INSTALL_DIR/
+
.build-extends-template:
extends:
- .binary-build-template
biod.pnpi.spb.ru / alexxy / gromacs.git / commitdiff