1 PROJECT_NAME = @CMAKE_PROJECT_NAME@
2 @INCLUDE = Doxyfile-version
3 LAYOUT_FILE = @CMAKE_CURRENT_SOURCE_DIR@/DoxygenLayout.xml
4 INPUT = @CMAKE_CURRENT_SOURCE_DIR@ \
5 @CMAKE_SOURCE_DIR@/src \
6 @CMAKE_SOURCE_DIR@/share/template
7 FILE_PATTERNS = *.c *.cpp *.h *.md
8 # CUDA files could be included like this, but currently produce a lot of
10 # FILE_PATTERNS += *.cu *.cuh
11 EXAMPLE_PATH = @CMAKE_SOURCE_DIR@
13 EXCLUDE = @CMAKE_CURRENT_SOURCE_DIR@/examples \
14 @CMAKE_SOURCE_DIR@/src/contrib \
15 @CMAKE_SOURCE_DIR@/src/external \
16 @CMAKE_SOURCE_DIR@/src/gromacs/selection/parser.cpp \
17 @CMAKE_SOURCE_DIR@/src/gromacs/selection/parser.h \
18 @CMAKE_SOURCE_DIR@/src/gromacs/selection/scanner.cpp @NB_KERNEL_DIRS_TO_IGNORE_IN_DOXYGEN@
19 EXCLUDE_SYMBOLS = YY* yy* _gmx_sel_yy*
20 EXCLUDE_SYMBOLS += __STDC*
21 EXCLUDE_SYMBOLS += TEST TEST_F TEST_P TYPED_TEST_CASE TYPED_TEST INSTANTIATE_TEST_CASE_P
22 EXCLUDE_SYMBOLS += MOCK_METHOD* MOCK_CONST_METHOD*
24 STRIP_FROM_PATH = @CMAKE_SOURCE_DIR@
25 STRIP_FROM_INC_PATH = @CMAKE_SOURCE_DIR@/src
26 INCLUDE_PATH = @CMAKE_SOURCE_DIR@/src
27 HAVE_DOT = @DOXYGEN_DOT_FOUND@
28 DOT_PATH = @DOXYGEN_DOT_PATH@
29 MSCGEN_PATH = @DOXYGEN_MSCGEN_PATH@
30 DOTFILE_DIRS = @DEPGRAPH_DIR@
31 @DOXYGEN_EXTRA_SETTINGS@
33 ENABLED_SECTIONS = @DOXYGEN_SECTIONS@
36 # Extract documentation also for code in headers within #ifdef __cplusplus
37 PREDEFINED = __cplusplus
38 # This is for cases where \cond does not work, so that #ifndef can also be used.
39 # thread_mpi also uses this, but it is now excluded from the documentation.
41 # This makes 'static gmx_inline' functions appear better in the documentation.
42 PREDEFINED += gmx_inline=inline
43 # This is for parser.cpp to make it produce code that Doxygen understands
44 # and that does not have unnecessary function declarations.
45 PREDEFINED += __STDC__ YYMALLOC=malloc YYFREE=free
47 JAVADOC_AUTOBRIEF = YES
48 BUILTIN_STL_SUPPORT = YES
49 INLINE_INHERITED_MEMB = YES
50 SORT_BY_SCOPE_NAME = YES
51 ALPHABETICAL_INDEX = YES
52 HTML_DYNAMIC_SECTIONS = YES
54 # Setting this to NO has a side effect to hide undocumented headers from the
55 # file list, which makes it generally look nicer.
57 STRIP_CODE_COMMENTS = NO
59 EXTRACT_LOCAL_CLASSES = NO
60 # This includes 'static inline' functions from headers in the documentation.
63 ALIASES += Gromacs=GROMACS
65 DOT_IMAGE_FORMAT = svg
66 DOT_MULTI_TARGETS = YES
67 # According to Doxygen docs, this is required for svg support on IE
68 HTML_FILE_EXTENSION = .xhtml
70 OUTPUT_DIRECTORY = @HTML_OUTPUT_DIR@/doxygen