admin/ci-scripts/gromacs-base-test.sh

   1 #!/usr/bin/env bash
   2 set -e
   3 CMAKE=${CMAKE:-$(which cmake)}
   4 cd $BUILD_DIR
   5 export UBSAN_OPTIONS=halt_on_error=1:print_stacktrace=1:suppressions=$CI_PROJECT_DIR/admin/ubsan-suppressions.txt
   6 # Needed to run MPI enabled code in the docker images, until we set up different users
   7 export OMPI_ALLOW_RUN_AS_ROOT=1
   8 export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
   9 export ASAN_OPTIONS="check_initialization_order=1:detect_invalid_pointer_pairs=1:strict_init_order=true:strict_string_checks=true:detect_stack_use_after_return=true"
  10 # If $GMX_TEST_REQUIRED_NUMBER_OF_DEVICES is not set and we have GPUs, set it
  11 if [ -z $GMX_TEST_REQUIRED_NUMBER_OF_DEVICES ] && [ -n $KUBERNETES_EXTENDED_RESOURCE_NAME ] ; then
  12     if grep -q '/gpu$' <<< "$KUBERNETES_EXTENDED_RESOURCE_NAME"; then
  13         echo "export GMX_TEST_REQUIRED_NUMBER_OF_DEVICES=\"$KUBERNETES_EXTENDED_RESOURCE_LIMIT\"";
  14         export GMX_TEST_REQUIRED_NUMBER_OF_DEVICES="$KUBERNETES_EXTENDED_RESOURCE_LIMIT";
  15     fi
  16 fi
  17 if grep -qF 'nvidia.com/gpu' <<< "$KUBERNETES_EXTENDED_RESOURCE_NAME"; then
  18     nvidia-smi || true;
  19 fi
  20 if grep -qF 'amd.com/gpu' <<< "$KUBERNETES_EXTENDED_RESOURCE_NAME"; then
  21     clinfo -l || true;
  22 fi
  23 if grep -qF 'intel.com/gpu' <<< "$KUBERNETES_EXTENDED_RESOURCE_NAME"; then
  24     sycl-ls || true;
  25     export SYCL_CACHE_PERSISTENT=1; # Issue #4218
  26 fi
  27 ctest -D $CTEST_RUN_MODE --output-on-failure | tee ctestLog.log || true
  28 awk '/The following tests FAILED/,/^Errors while running CTest|^$/' ctestLog.log | tee ctestErrors.log
  29 xsltproc $CI_PROJECT_DIR/scripts/CTest2JUnit.xsl Testing/`head -n 1 < Testing/TAG`/*.xml > JUnitTestResults.xml
  30 if [ -s ctestErrors.log ] ; then
  31     echo "Error during running ctest";
  32     exit 1;
  33 fi
  34 cd .