const std::vector< std::vector< size_t > > &inputAminoacids, const double cutOff) {
outputList.resize(0);
outputList.resize(inputBLists.size(), false);
+ std::cout << inputColor.size() << " " << inputBLists.size() << " " << inputAminoacids.size() << "\n";
for (size_t i {0}; i < inputColor.size(); ++i) {
for (size_t j = 0; j < inputBLists.size(); ++j) {
for (size_t k = 0; k < inputBLists[j].size(); ++k) {
betaListsRVecsEvaluation(trajectoryFrame, betaLists[frnr], betaListsRVecs, indexCA);
for (size_t i = 0; i < colorsToPeptide.size(); ++i) {
if (colorsToPeptide[i]) {
- std::cout << "searching for beta-lists\n";
searchNearBetaLists(trajectoryFrame, betaLists[frnr], colorsNames[i], colorsToBeta[i], aminoacidsIndex, effRad * 9000);
}
}