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alexxy/gromacs.git
2016-01-25
Mark Abraham
Merge branch release-5-1
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2016-01-24
Berk Hess
Fix exact continuation from non-energy steps
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2016-01-24
Berk Hess
Fix energy file continuation with md-vv
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2016-01-24
Mark Abraham
Update references to HTML and online documentation
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2016-01-24
Teemu Murtola
Document limitations on 32-bit Linux
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2016-01-24
Berk Hess
Fix energy average with continuation
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2016-01-20
Szilárd Páll
Merge remote-tracking branch 'origin/release-5-1' into...
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2016-01-20
David van der...
Couple of new quotes
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2016-01-20
Carsten Kutzner
Made g_tune_pme work with -cpi -deffnm combination
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2016-01-14
Mark Abraham
Permit customized testing of grompp and mdrun
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2016-01-13
Mark Abraham
Allowed NVML support to be toggled
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2016-01-12
Mark Abraham
Merge branch release-5-0 into release-5-1
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2016-01-12
Teemu Murtola
Make GMX_MPI always defined to 0/1
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2016-01-12
Teemu Murtola
Move flags out of t_trxframe
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2016-01-12
Teemu Murtola
Remove historical times from t_trxframe
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2016-01-12
Teemu Murtola
Support passing tarball MD5 for webpage build
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2016-01-12
Teemu Murtola
Remove vmdplugin from t_trxframe
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2016-01-11
Teemu Murtola
Convert more config.h defines to 0/1
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2016-01-11
Mark Abraham
Improved update_coords
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2016-01-10
Teemu Murtola
Support trajectory analysis with any atom subset
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2016-01-10
Teemu Murtola
Support frames with atom subsets in selections
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2016-01-10
Teemu Murtola
Support arbitrary subset trajectories in poscalc.*
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2016-01-10
Teemu Murtola
Make file names in fatal error messages more robust
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2016-01-10
Teemu Murtola
Do not warn about missing OpenMP with GMX_GPU=OFF
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2016-01-10
Teemu Murtola
More config.h macros to 0/1
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2016-01-10
Teemu Murtola
Convert some config.h macros to use 0/1
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2016-01-09
Szilárd Páll
split NBNXN CUDA kernels into four compilation units
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2016-01-08
Berk Hess
Fix PME load balancing skipping a setup
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2016-01-08
Mark Abraham
Improve tpr header version handling
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2016-01-08
Mark Abraham
Merge branch release-5-1
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2016-01-07
Mark Abraham
Fix some mdrun header dependencies
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2016-01-07
Mark Abraham
Avoid more C++ bindings for MPI
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2016-01-07
Mark Abraham
Document how potential-switch works
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2016-01-07
Mark Abraham
Stop using UNDEFINED as name of a symbol
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2016-01-07
Mark Abraham
Remove fields used only for SD2
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2016-01-07
Mark Abraham
Backport md-vv fixes
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2016-01-07
Mark Abraham
Remove SD2 integrator
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2016-01-07
David van der...
Made normal modes work with shells and vsites
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2016-01-07
Michael Shirts
Fixes two problems related to restarts for vv.
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2016-01-06
Mark Abraham
Fix spurious gcc warning
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2016-01-05
Teemu Murtola
Update packaging build
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2016-01-05
Mark Abraham
Fix logic for DD missing-interactions check
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2016-01-05
Szilard Pall
remove duplicate macros and enable Wundef in CUDA
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2016-01-05
Mark Abraham
Use EXPECT_TRUE and EXPECT_FALSE in new SIMD tests
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2016-01-04
Erik Lindahl
Fix unnecessary SIMD warning
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2016-01-04
Mark Abraham
Change GMX_DOUBLE to be always defined
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2016-01-01
Szilard Pall
Fix xlc+CUDA workaround in gmxManageNvccConfig
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2015-12-31
Teemu Murtola
Report used defines in check-source
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2015-12-29
Berk Hess
Correct vector check of gmx check
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2015-12-29
Teemu Murtola
Packaging build script for web site
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2015-12-29
Teemu Murtola
Reduce inputrec.h dependencies
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2015-12-28
Mark Abraham
Create invertmatrix.h
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2015-12-28
Mark Abraham
Merge branch release-5-1
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2015-12-27
Erik Lindahl
Extended SIMD, implementation for Intel MIC
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2015-12-27
Teemu Murtola
Improve text writing in help output
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2015-12-27
Roland Schulz
Fix G++ 4.7.0
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2015-12-27
Teemu Murtola
Source packaging with new releng
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2015-12-27
Teemu Murtola
Further vec.h cleanup
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2015-12-27
Mark Abraham
Fix some OpenCL issues
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2015-12-27
Berk Hess
Reorganized domdec initialization
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2015-12-27
Erik Lindahl
Avoid using aligned member variables in SIMD tests
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2015-12-26
Alexey Shvetsov
Make moleculetype case sensitive
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2015-12-26
Szilard Pall
Improve documentation on OpenCL issue with NVIDIA
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2015-12-26
Teemu Murtola
Clean up vec.h
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2015-12-24
Mark Abraham
Moved responsibility for f_global
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2015-12-24
Mark Abraham
Shell code cleanup
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2015-12-24
Erik Lindahl
Extended SIMD, implementation for IBM Power7/8 VSX
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2015-12-24
Erik Lindahl
IBM Power6 VMX extended SIMD
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2015-12-24
Erik Lindahl
Extended SIMD, impl for Arm Neon and 64-bit Neon Asimd
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2015-12-24
Teemu Murtola
Add functionality to TextWriter
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2015-12-21
Erik Lindahl
Extended SIMD, implementation for BlueGene/Q
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2015-12-21
Erik Lindahl
Extended SIMD implementation for 256-bit AVX and AVX2
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2015-12-20
Erik Lindahl
Next-generation SIMD, for SSE2, SSE4.1 and 128-bit AVX
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2015-12-20
Teemu Murtola
Fix most warnings with Doxygen 1.8.10
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2015-12-20
Berk Hess
Merge release-5-1 into master
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2015-12-19
Berk Hess
Bring performance estimation up to date
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2015-12-19
Erik Lindahl
Fix compiler warning in cpuinfo for non-x86 architectures
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2015-12-19
Teemu Murtola
Update versioning for new scheme
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2015-12-17
Berk Hess
Removed topology pointers from DD struct
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2015-12-17
Mark Abraham
Simplified energy-summation code
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2015-12-16
Teemu Murtola
Move calcgrid.* to fft/
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2015-12-16
Berk Hess
Add one element to state rvec arrays
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2015-12-16
Erik Lindahl
Next-generation SIMD module, reference implementation
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2015-12-15
Erik Lindahl
C++ math function cleanup
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2015-12-15
Teemu Murtola
Move main.*, splitter.*, gmx_omp_nthreads.* to mdlib
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2015-12-15
Teemu Murtola
Move readinp.* and warninp.* to fileio/
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2015-12-15
Teemu Murtola
Move hardware detection to hardware/
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2015-12-15
Teemu Murtola
Move some mdrun code out of gmxlib/
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2015-12-15
Teemu Murtola
Move gpu_utils etc. out of gmxlib
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2015-12-14
Teemu Murtola
Install baseversion.h
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2015-12-13
Szilard Pall
OpenCL code cleanup
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2015-12-12
Teemu Murtola
Create separate module for trajectory data
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2015-12-12
Berk Hess
Removed unused mdrun option -dn
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2015-12-12
Teemu Murtola
Move disre.* and orires.* to listed-forces/
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2015-12-12
Teemu Murtola
Move ifunc.* to topology/
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2015-12-12
Teemu Murtola
Move put_atoms_in_box_omp() to sim_util.*
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2015-12-12
Teemu Murtola
Remove topology -> fileio dependency
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2015-12-12
Mark Abraham
Broke up copyright.*
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2015-12-12
Mark Abraham
Require Nose-Hoover with MTTK
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2015-12-12
Christoph Junghans
AdResS: lost performance tweak
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