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alexxy/gromacs.git
2016-09-16
Berk Hess
Merge branch release-2016
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2016-09-16
Berk Hess
Made distance restraints work with threads and DD
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2016-09-15
Aleksei Iupinov
Move the PME Ewald coefficients to the PME structure
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2016-09-13
Berk Hess
Moved expanded ensemble history to pointer in t_state
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2016-09-13
Roland Schulz
Tidy: modernize-use-emplace
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2016-09-13
Berk Hess
Change ED and swapstate to pointers in t_state
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2016-09-12
Mark Abraham
Preliminary clean up of NVML code
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2016-09-12
Berk Hess
Add const to thread-MPI functions
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2016-09-12
Vedran Miletić
Document wallcycle counters and subcounters
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2016-09-12
Teemu Murtola
Fix various memory leaks
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2016-09-11
Vedran Miletić
Print OpenCL error string instead of error code
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2016-09-10
Berk Hess
Remove continuation from convert_tpr
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2016-09-10
Aleksei Iupinov
Fix PME data destructor not being called
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2016-09-08
Mark Abraham
Merge branch release-5-1 into release-2016
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2016-09-08
Mark Abraham
Bumped patch number to prepare for future 5.1.5 release
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2016-09-07
Mark Abraham
Version 5.1.4
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2016-09-07
Mark Abraham
Removed HIS1 from oplsaa and charmm definitions
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2016-09-07
Mark Abraham
Fix LYN charges in amber03
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2016-09-07
Mark Abraham
Fix amber03 HIP charges
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2016-09-07
Teemu Murtola
Clean up CTest test management
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2016-09-07
Erik Lindahl
Bump oldest cmake, compiler and CUDA versions required
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2016-09-06
Mark Abraham
Work around glibc 2.23 with CUDA
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2016-09-06
Berk Hess
Fix bug with conjugate-gradient and OpenMP
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2016-09-06
Berk Hess
Consolidate MD algorithm atom setup
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2016-09-05
David van der...
Merge "Merge branch release-2016"
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2016-09-05
Berk Hess
Re-enable flexible constraints with DD
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2016-09-04
Berk Hess
Merge branch release-2016
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2016-09-03
Berk Hess
Clean up PME flags variable use
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2016-09-02
Berk Hess
Merge branch release-5-1 into release-2016
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2016-09-02
Berk Hess
Fix Parrinello-Rahman with nstpcouple>1
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2016-08-30
Teemu Murtola
Basic support for transforming KeyValueTrees
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2016-08-30
Berk Hess
Make virial reproducible
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2016-08-27
Szilárd Páll
Make ASAN/TSAN/MSAN build types easier to discover
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2016-08-27
Mark Abraham
Stop using gmx_fatal in grompp
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2016-08-27
Teemu Murtola
Support KeyValueTree objects in refdata
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2016-08-27
Berk Hess
Reduce rounding errors in SETTLE
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2016-08-27
Roland Schulz
Fix build with GMX_USE_TNG=off
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2016-08-25
Jochen Hub
Fixed bug in gmx insert-molecules.
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2016-08-24
Roland Schulz
Remove unnecessary ICC warning suppression
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2016-08-24
Berk Hess
Fix Ewald surface+3DC corrections
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2016-08-24
Mark Abraham
Remove hacks for outdated BlueGene support
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2016-08-24
David van der...
Added documentation for shell potentials.
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2016-08-24
Berk Hess
Merge branch release-5-1 into release-2016
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2016-08-23
Berk Hess
Remove variable precision gro writing
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2016-08-18
Teemu Murtola
Check for unused refdata values
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2016-08-18
Teemu Murtola
Generic structured key-value tree for options
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2016-08-18
Teemu Murtola
Support for non-string option value assignment
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2016-08-17
Teemu Murtola
Basic support for array-of-structs in options
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2016-08-17
Teemu Murtola
Generalize and simplify option value storage
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2016-08-17
Teemu Murtola
Generalize option section internals
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2016-08-17
Teemu Murtola
Reimplement subsections in Options
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2016-08-17
Berk Hess
Fixed opening of wall table files
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2016-08-15
Mark Abraham
Merge branch release-2016
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2016-08-15
Mark Abraham
Fixes for BG/Q platform files and install guide
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2016-08-15
Berk Hess
Reduce FE pair-list memory usage
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2016-08-12
Mark Abraham
Bump number to prepare for first patch release
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2016-08-10
Berk Hess
Fix deadlock with thread-MPI
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2016-08-09
Berk Hess
Fix twin-cutoff for GPU LJ pot-switch
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2016-08-05
Erik Lindahl
Fix proper relative tolerance checking in testutils
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2016-08-04
Mark Abraham
Version 2016
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2016-08-04
Teemu Murtola
Fix/improve doc links in template/README
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2016-08-03
David van der...
Three new quotes.
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2016-08-03
Vedran Miletić
Use only legal characters in OpenCL cache filename
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2016-08-01
Teemu Murtola
Function to split delimited strings
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2016-07-31
James Graham
Avoid blank line in writing index file
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2016-07-31
David van der...
Merge "Merge branch release-5-1 into release-2016"...
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2016-07-30
Roland Schulz
Update GCC version for reference build
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2016-07-30
Vedran Miletić
Document gmx_cgsort_t and gmx_domdec_sort_t structs
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2016-07-29
Mark Abraham
Improve handling of gmock and gcc6
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2016-07-29
Mark Abraham
Merge branch release-5-1 into release-2016
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2016-07-29
David van der...
Fixes incorrect charges in OPLS/AA-L for HISD and HISE
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2016-07-28
Mark Abraham
Add toolchain flags for SSE2 compilation
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2016-07-23
Roland Schulz
Merge release-2016 into master
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2016-07-21
Mark Abraham
Bumped patch number to prepare for future 5.1.4 release
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2016-07-18
Roland Schulz
Fix non-parallel build
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2016-07-14
Mark Abraham
Fix issues with using int for number of steps
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2016-07-14
Teemu Murtola
Use newer gcc for coverage
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2016-07-13
Mark Abraham
Version 5.1.3
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2016-07-12
Mark Abraham
Merge branch release-2016
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2016-07-12
Mark Abraham
Fix trr magic number reading
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2016-07-11
Mark Abraham
Fix gmx mdrun -membed -ntmpi -1
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2016-07-11
Erik Lindahl
Fix membed with partial revert of 29943f
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2016-07-11
Michael Shirts
Fix for incorrectly setting expanded ensemble when...
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2016-07-11
Mark Abraham
Fix regressiontest download md5sum
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2016-07-09
Mark Abraham
First 2016 release candidate
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2016-07-09
Erik Lindahl
Hardware detection clean-up and pre/post-processing
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2016-07-09
Erik Lindahl
Prevent fragile use cases of checkpoint appending
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2016-07-08
Erik Lindahl
Update affinity checking for Intel compiler
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2016-07-08
Vedran Miletić
Print working dir before command line
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2016-07-08
David van der...
Merge "Merge branch release-5-1 into release-2016"...
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2016-07-08
Jochen Hub
Updated g_wham for the new pull setup
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2016-07-08
Mark Abraham
Merge branch release-5-1 into release-2016
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2016-07-08
David van der...
Introduce fatal error for too few frames in gmx dos.
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2016-07-08
Mark Abraham
Simplify SIMD compiler flag construction
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2016-07-08
Erik Lindahl
Add detection for ARMv7 cycle counter support
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2016-07-08
Erik Lindahl
Work around compiler issue with random test
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2016-07-08
Szilárd Páll
Add PDF metadata to the manual
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2016-07-08
Szilárd Páll
User guide clarifications
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2016-07-07
Erik Lindahl
Reduce hwloc & cpuid test requirements
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2016-07-07
Mark Abraham
Move consistency check for number of threads
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