biod.pnpi.spb.ru
/
alexxy
/
gromacs.git
/ shortlog
commit
grep
author
committer
pickaxe
?
search:
re
summary
| shortlog |
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
alexxy/gromacs.git
2019-02-16
Berk Hess
Move nbnxn files to nbnxm directory
commit
|
commitdiff
|
tree
|
snapshot
2019-02-16
David van der...
Tests of restrained listed potentials.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-15
Paul Bauer
Fix memory leaks in editconf
commit
|
commitdiff
|
tree
|
snapshot
2019-02-15
Szilárd Páll
Extend GpuEventSynchronizer to allow on-device sync
commit
|
commitdiff
|
tree
|
snapshot
2019-02-15
Semen Yesylevskyy
Fixed misleading wording for membed option.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-15
Semen Yesylevskyy
Add new suggested external trajectory analysis tool
commit
|
commitdiff
|
tree
|
snapshot
2019-02-15
Paul Bauer
Fix memory issues in preprocess
commit
|
commitdiff
|
tree
|
snapshot
2019-02-15
Paul Bauer
Refactor vsite topology
commit
|
commitdiff
|
tree
|
snapshot
2019-02-13
Szilárd Páll
Minor refactoring in mdrunnner
commit
|
commitdiff
|
tree
|
snapshot
2019-02-13
Paul Bauer
Refactor rtp renaming
commit
|
commitdiff
|
tree
|
snapshot
2019-02-13
Mark Abraham
Make EnergyOutput wrapper class
commit
|
commitdiff
|
tree
|
snapshot
2019-02-13
Artem Zhmurov
Ignore Visual Studio Code metadata.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-13
Mark Abraham
Reduce coupling to paddedvector.h
commit
|
commitdiff
|
tree
|
snapshot
2019-02-12
Szilárd Páll
Minor refactor of gpuid / task mapping parsing
commit
|
commitdiff
|
tree
|
snapshot
2019-02-12
Mark Abraham
Quiet clang warning
commit
|
commitdiff
|
tree
|
snapshot
2019-02-12
Paul Bauer
Refactor special bonds
commit
|
commitdiff
|
tree
|
snapshot
2019-02-12
Paul Bauer
Refactor t_rbonded and t_rbondeds
commit
|
commitdiff
|
tree
|
snapshot
2019-02-12
Paul Bauer
Refactor t_restp
commit
|
commitdiff
|
tree
|
snapshot
2019-02-12
Christian Blau
3x3 matrices
commit
|
commitdiff
|
tree
|
snapshot
2019-02-12
Mark Abraham
Remove gmx::Regex
commit
|
commitdiff
|
tree
|
snapshot
2019-02-11
David van der...
Remove buggy debug output.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-11
David van der...
Tests for polarization functions.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-11
Christian Blau
view on MultiDimArray
commit
|
commitdiff
|
tree
|
snapshot
2019-02-11
Paul Bauer
Refactor t_hack to MoleculePatches
commit
|
commitdiff
|
tree
|
snapshot
2019-02-11
Roland Schulz
Remove EmptyArrayRef
commit
|
commitdiff
|
tree
|
snapshot
2019-02-11
Paul Bauer
Fix bug in residue type reading
commit
|
commitdiff
|
tree
|
snapshot
2019-02-09
Kevin Boyd
Use more vector in selection index groups structs
commit
|
commitdiff
|
tree
|
snapshot
2019-02-09
Paul Bauer
Change nightly matrix label to not use hwloc
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
David van der...
Further increase of tolerance for angles.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
David van der...
Increased tolerance for angle functions.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
Mark Abraham
Fix Intel compiler warning
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
David van der...
Increase tolerance in Angle test.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
Thomas Ullmann
separated .rst documentation of dihedral PCA and hydrog...
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
Mark Abraham
Remove copy_energy from energy-writing steps
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
Mark Abraham
Reform energy output tests
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
Roland Schulz
Fix sign warning
commit
|
commitdiff
|
tree
|
snapshot
2019-02-08
David van der...
Tests for listed force potentials.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-07
Christian Blau
mdspan - add bracket operator slicing
commit
|
commitdiff
|
tree
|
snapshot
2019-02-07
Roland Schulz
Revert size to be unsigned for ArrayRef
commit
|
commitdiff
|
tree
|
snapshot
2019-02-07
Roland Schulz
Add ssize and remove static_casts
commit
|
commitdiff
|
tree
|
snapshot
2019-02-06
Thomas Ullmann
added a unit test for make_ndx to check generation...
commit
|
commitdiff
|
tree
|
snapshot
2019-02-06
Paul Bauer
Refactor t_hackblock
commit
|
commitdiff
|
tree
|
snapshot
2019-02-05
Thomas Ullmann
Fix bug in generating default protein index groups
commit
|
commitdiff
|
tree
|
snapshot
2019-02-04
Mark Abraham
Remove SIMD support from group scheme
commit
|
commitdiff
|
tree
|
snapshot
2019-02-04
Paul Bauer
Fix segmentation fault in minimize
commit
|
commitdiff
|
tree
|
snapshot
2019-02-04
Roland Schulz
Rename all source files from - to _ for consistency.
commit
|
commitdiff
|
tree
|
snapshot
2019-02-04
Roland Schulz
Fix cmake policy warning
commit
|
commitdiff
|
tree
|
snapshot
2019-02-04
Roland Schulz
Replace compat::make_unique with std::make_unique
commit
|
commitdiff
|
tree
|
snapshot
2019-02-04
Christian Blau
mdspan - free begin and end functions
commit
|
commitdiff
|
tree
|
snapshot
2019-02-04
Christian Blau
multidimensional array - bugfix swap
commit
|
commitdiff
|
tree
|
snapshot
2019-02-02
Roland Schulz
Fix Intel compiler on Windows build
commit
|
commitdiff
|
tree
|
snapshot
2019-02-02
Roland Schulz
Renamed listed-forces to listed_forces
commit
|
commitdiff
|
tree
|
snapshot
2019-02-02
Roland Schulz
Remove reliance on inconsistent cmake feature testing
commit
|
commitdiff
|
tree
|
snapshot
2019-02-02
Roland Schulz
Add recommendation of how to compile with MPI
commit
|
commitdiff
|
tree
|
snapshot
2019-01-31
Roland Schulz
Fix clfft build
commit
|
commitdiff
|
tree
|
snapshot
2019-01-30
Roland Schulz
Change all C to C++ outside of TNG
commit
|
commitdiff
|
tree
|
snapshot
2019-01-29
Roland Schulz
Add cmake C++14 feature check
commit
|
commitdiff
|
tree
|
snapshot
2019-01-28
Roland Schulz
Resolve C++14 TODOs
commit
|
commitdiff
|
tree
|
snapshot
2019-01-28
Mark Abraham
Bump CUDA requirement to 9.0
commit
|
commitdiff
|
tree
|
snapshot
2019-01-26
David van der...
Fixed some typos in comments.
commit
|
commitdiff
|
tree
|
snapshot
2019-01-26
Roland Schulz
Fix clang warning
commit
|
commitdiff
|
tree
|
snapshot
2019-01-26
Roland Schulz
Fix misc clang warnings
commit
|
commitdiff
|
tree
|
snapshot
2019-01-25
Roland Schulz
Require C++14
commit
|
commitdiff
|
tree
|
snapshot
2019-01-25
Mark Abraham
Require clang 3.6
commit
|
commitdiff
|
tree
|
snapshot
2019-01-25
Mark Abraham
Fix post-submit build
commit
|
commitdiff
|
tree
|
snapshot
2019-01-25
Mark Abraham
Unify regex implementation
commit
|
commitdiff
|
tree
|
snapshot
2019-01-25
Berk Hess
Fix LINCS bug from recent commit 211039fc
commit
|
commitdiff
|
tree
|
snapshot
2019-01-25
Mark Abraham
Bump required gcc compiler to 5.1
commit
|
commitdiff
|
tree
|
snapshot
2019-01-25
Mark Abraham
Use native cmake C++11 support
commit
|
commitdiff
|
tree
|
snapshot
2019-01-24
Christian Blau
Remove extra semicolons causing clang warnings.
commit
|
commitdiff
|
tree
|
snapshot
2019-01-24
Paul Bauer
Change gcov to run on bs-mic
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Paul Bauer
Fix bug introduced in 9c2eb03b
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Roland Schulz
Merge release-2019 into master
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Roland Schulz
Merge release-2018 into release-2019
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Roland Schulz
Rename gmx Variant to Any
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Christian Blau
Multidimensional data in canonical layout.
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Berk Hess
Fix error with 2D/3D DLB
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Paul Bauer
Introduce string comparison function
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Roland Schulz
Turn SystemAtomIterator into proper iterator
commit
|
commitdiff
|
tree
|
snapshot
2019-01-23
Paul Bauer
Move QMMM charge setting to grompp
commit
|
commitdiff
|
tree
|
snapshot
2019-01-22
Berk Hess
Add utility method to NbnxnPairlistGpu
commit
|
commitdiff
|
tree
|
snapshot
2019-01-22
Berk Hess
Remove now usused GPU alloc/free functions
commit
|
commitdiff
|
tree
|
snapshot
2019-01-22
Berk Hess
Convert NbnxnPairlistGpu to C++
commit
|
commitdiff
|
tree
|
snapshot
2019-01-22
Paul Bauer
Prepare for 2018.6
commit
|
commitdiff
|
tree
|
snapshot
2019-01-22
Mark Abraham
Remove init_md and improve init_em
commit
|
commitdiff
|
tree
|
snapshot
2019-01-22
Paul Bauer
Version 2018.5
commit
|
commitdiff
|
tree
|
snapshot
2019-01-22
Christoph Junghans
gmxManageLmfit.cmake: enforce usage of 7.0
commit
|
commitdiff
|
tree
|
snapshot
2019-01-21
Mark Abraham
Clean up initialize_lambdas
commit
|
commitdiff
|
tree
|
snapshot
2019-01-21
Szilárd Páll
Add CUDA CC 7.5 (Turing) support with nvcc
commit
|
commitdiff
|
tree
|
snapshot
2019-01-21
Mark Abraham
Fix trjconv -ndec
commit
|
commitdiff
|
tree
|
snapshot
2019-01-21
Kevin Boyd
Convert gmx_update_t to C++
commit
|
commitdiff
|
tree
|
snapshot
2019-01-21
Berk Hess
Convert nbnxn_atomdata_t to C++
commit
|
commitdiff
|
tree
|
snapshot
2019-01-21
Paul Bauer
Refactor ResidueTypes
commit
|
commitdiff
|
tree
|
snapshot
2019-01-18
Mark Abraham
Disabled internal clFFT when using MSVC with OpenCL
commit
|
commitdiff
|
tree
|
snapshot
2019-01-18
Mark Abraham
Improve nvcc error reporting
commit
|
commitdiff
|
tree
|
snapshot
2019-01-18
Kevin Boyd
Add tests for gmx mindist
commit
|
commitdiff
|
tree
|
snapshot
2019-01-18
Paul Bauer
Change one gmx_mtop_t atom loop to C++
commit
|
commitdiff
|
tree
|
snapshot
2019-01-18
Kevin Boyd
Move non-analysis tools from gmxana to gmxpreprocess
commit
|
commitdiff
|
tree
|
snapshot
2019-01-18
Mark Abraham
Remove ctest section called simple
commit
|
commitdiff
|
tree
|
snapshot
2019-01-18
M. Eric Irrgang
Remove .travis.yml Travis-CI config file.
commit
|
commitdiff
|
tree
|
snapshot
next