BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2015-05-10	Teemu Murtola	Improve build system for Sphinx	commit \| commitdiff \| tree \| snapshot
2015-05-10	Teemu Murtola	Convert developer manual to rst	commit \| commitdiff \| tree \| snapshot
2015-05-07	Berk Hess	Removed non-ff atomtypes from oplsaa and charmm27	commit \| commitdiff \| tree \| snapshot
2015-04-30	Mark Abraham	Move GPU implementation to new interface	commit \| commitdiff \| tree \| snapshot
2015-04-28	Mark Abraham	Add application-clock NVML-based support for Quadro...	commit \| commitdiff \| tree \| snapshot
2015-04-27	Mark Abraham	Clean up remnants in mdrun	commit \| commitdiff \| tree \| snapshot
2015-04-24	Mark Abraham	Add developer docs for new documentation infrastructure	commit \| commitdiff \| tree \| snapshot
2015-04-24	Teemu Murtola	Add section on naming conventions to dev manual	commit \| commitdiff \| tree \| snapshot
2015-04-23	Mark Abraham	First beta release of 5.1	commit \| commitdiff \| tree \| snapshot
2015-04-22	Berk Hess	Merge branch 'release-5-0'	commit \| commitdiff \| tree \| snapshot
2015-04-21	Szilárd Páll	Allow manually setting target GPU architectures	commit \| commitdiff \| tree \| snapshot
2015-04-21	Magnus Lundborg	TNG version 1.7.3	commit \| commitdiff \| tree \| snapshot
2015-04-21	Mark Abraham	Merge "Merge branch release-5-0"	commit \| commitdiff \| tree \| snapshot
2015-04-17	Berk Hess	Add value_ref and value to pull_coord_t	commit \| commitdiff \| tree \| snapshot
2015-04-17	Szilárd Páll	define CUDA version and texobj support in config.h	commit \| commitdiff \| tree \| snapshot
2015-04-17	Mark Abraham	Add comment about Andersen themostat and constraints	commit \| commitdiff \| tree \| snapshot
2015-04-17	Berk Hess	Correct -ntmpi auto for intel nehalem and older	commit \| commitdiff \| tree \| snapshot
2015-04-17	David van der...	Updated exponential fitting to make it robust.	commit \| commitdiff \| tree \| snapshot
2015-04-09	Mark Abraham	Merge branch release-5-0	commit \| commitdiff \| tree \| snapshot
2015-04-09	David van der...	Clarified comments for time-dependent electric fields.	commit \| commitdiff \| tree \| snapshot
2015-04-08	David van der...	Fixed incorrect output of gb_algorith as sa_algorithm.	commit \| commitdiff \| tree \| snapshot
2015-04-08	Berk Hess	Added pull geometry direction-relative	commit \| commitdiff \| tree \| snapshot
2015-04-08	Mark Abraham	Update mdrun Doxygen	commit \| commitdiff \| tree \| snapshot
2015-04-08	Mark Abraham	Made pme_work_t opaque	commit \| commitdiff \| tree \| snapshot
2015-04-01	Mark Abraham	Initialize n_tricvec field of t_pbc always	commit \| commitdiff \| tree \| snapshot
2015-04-01	Berk Hess	Corrected force-switch manual section	commit \| commitdiff \| tree \| snapshot
2015-03-30	Erik Lindahl	Quote from Szilard's talk at GTC2015	commit \| commitdiff \| tree \| snapshot
2015-03-30	Mark Abraham	Improved man-page machinery	commit \| commitdiff \| tree \| snapshot
2015-03-25	Erik Lindahl	Quote from Jen-Hsun at the NVIDIA GTC conference 2015	commit \| commitdiff \| tree \| snapshot
2015-03-19	Berk Hess	Removed reduction of dH/dl without FE	commit \| commitdiff \| tree \| snapshot
2015-03-19	Mark Abraham	Made error message more generic	commit \| commitdiff \| tree \| snapshot
2015-03-19	Mark Abraham	Extend Force sub-counters	commit \| commitdiff \| tree \| snapshot
2015-03-17	Roland Schulz	Fix linking with static libxml2	commit \| commitdiff \| tree \| snapshot
2015-03-13	Mark Abraham	Made GPU warning messages more user friendly	commit \| commitdiff \| tree \| snapshot
2015-03-12	Berk Hess	Fixed mdrun fp exception with -debug	commit \| commitdiff \| tree \| snapshot
2015-03-11	Berk Hess	Added update x copy-back to update timer	commit \| commitdiff \| tree \| snapshot
2015-03-11	Berk Hess	Reduced cost of Berendsen pressure coupling	commit \| commitdiff \| tree \| snapshot
2015-03-06	Berk Hess	Improve threading of bondeds	commit \| commitdiff \| tree \| snapshot
2015-03-06	Mark Abraham	Restore wallcycle subcounter name to "Bonded F"	commit \| commitdiff \| tree \| snapshot
2015-03-05	Mark Abraham	Fix Andersen thermostats	commit \| commitdiff \| tree \| snapshot
2015-03-05	Berk Hess	Made DD exclusion processing more efficient	commit \| commitdiff \| tree \| snapshot
2015-03-05	Berk Hess	SIMD acceleration for LINCS	commit \| commitdiff \| tree \| snapshot
2015-03-04	Berk Hess	Allow pull groups of 1 atom with mass 0	commit \| commitdiff \| tree \| snapshot
2015-03-04	Berk Hess	COM pulling options per coord, improved cylinder	commit \| commitdiff \| tree \| snapshot
2015-03-04	Roland Schulz	Fix GCC5 warnings	commit \| commitdiff \| tree \| snapshot
2015-03-03	Mark Abraham	Re-implement gmx tune_pme -cpi	commit \| commitdiff \| tree \| snapshot
2015-03-03	Erik Lindahl	Added single-accuracy SIMD double math functions	commit \| commitdiff \| tree \| snapshot
2015-03-03	Roland Schulz	nbnxn utils performance improvement for Phi	commit \| commitdiff \| tree \| snapshot
2015-03-03	Berk Hess	Fix div by zero in PP/PME ratio	commit \| commitdiff \| tree \| snapshot
2015-03-03	Mark Abraham	Move mdrun signalling code	commit \| commitdiff \| tree \| snapshot
2015-03-03	Mark Abraham	Add test that plain multi-simulation works	commit \| commitdiff \| tree \| snapshot
2015-03-02	David van der...	Updated documentation for electric fields.	commit \| commitdiff \| tree \| snapshot
2015-03-02	Berk Hess	Added parentheses for casts in SIMD macros	commit \| commitdiff \| tree \| snapshot
2015-03-02	Roland Schulz	Don't search installation prefix if binary is not found	commit \| commitdiff \| tree \| snapshot
2015-03-02	Mark Abraham	Run replica-exchange tests with MPI enabled	commit \| commitdiff \| tree \| snapshot
2015-03-02	Mark Abraham	Add infrastructure for running MPI integration tests	commit \| commitdiff \| tree \| snapshot
2015-02-25	Roland Schulz	C++ conversion for PME spread/gather	commit \| commitdiff \| tree \| snapshot
2015-02-25	Mark Abraham	New and reorganized documentation	commit \| commitdiff \| tree \| snapshot
2015-02-25	Mark Abraham	Add content to user guide	commit \| commitdiff \| tree \| snapshot
2015-02-25	Mark Abraham	Split pme.c into multiple files	commit \| commitdiff \| tree \| snapshot
2015-02-25	Mark Abraham	Add mdp-options to user guide	commit \| commitdiff \| tree \| snapshot
2015-02-24	Berk Hess	Fixed parallel distribution and thread count reporting	commit \| commitdiff \| tree \| snapshot
2015-02-24	Ake Sandgren	The test for HAVE_CXX11_REGEX fails since it doesn...	commit \| commitdiff \| tree \| snapshot
2015-02-24	Ake Sandgren	Checks should use correct CMAKE_REQUIRED_ variables	commit \| commitdiff \| tree \| snapshot
2015-02-24	Erik Lindahl	Added AVX-512ER SIMD support	commit \| commitdiff \| tree \| snapshot
2015-02-24	Erik Lindahl	Add AVX-512F SIMD support	commit \| commitdiff \| tree \| snapshot
2015-02-20	Erik Lindahl	Famous quote from Colleen McCullough	commit \| commitdiff \| tree \| snapshot
2015-02-20	Erik Lindahl	Added two pop-culture quotes from Andy Warhol.	commit \| commitdiff \| tree \| snapshot
2015-02-18	Mark Abraham	Reenable SIMD for R-B dihedrals	commit \| commitdiff \| tree \| snapshot
2015-02-14	Erik Marklund	gmx hbond no longer removes PBC when none is present	commit \| commitdiff \| tree \| snapshot
2015-02-13	Mark Abraham	Fix mdrun-only build	commit \| commitdiff \| tree \| snapshot
2015-02-13	Teemu Murtola	Replace more [BR] with rst bullet lists	commit \| commitdiff \| tree \| snapshot
2015-02-13	Teemu Murtola	Replace some [BR] in help texts with rst literals	commit \| commitdiff \| tree \| snapshot
2015-02-13	Teemu Murtola	Move flow chart from old-html to Sphinx	commit \| commitdiff \| tree \| snapshot
2015-02-13	Teemu Murtola	Make (most) HTML links to file formats work again	commit \| commitdiff \| tree \| snapshot
2015-02-13	Teemu Murtola	Convert file format descriptions to rst	commit \| commitdiff \| tree \| snapshot
2015-02-13	Teemu Murtola	Generate man pages through Sphinx	commit \| commitdiff \| tree \| snapshot
2015-02-13	Teemu Murtola	Replace tool HTML help with Sphinx-generated docs	commit \| commitdiff \| tree \| snapshot
2015-02-13	Mark Abraham	Implemented documentation with sphinx	commit \| commitdiff \| tree \| snapshot
2015-02-12	Roland Schulz	Merge release-5-0 into master	commit \| commitdiff \| tree \| snapshot
2015-02-12	Vedran Miletić	Fix removal of symlinks created during installation	commit \| commitdiff \| tree \| snapshot
2015-02-12	Roland Schulz	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree \| snapshot
2015-02-12	Berk Hess	Re-fixed PME bug with high OpenMP thread count	commit \| commitdiff \| tree \| snapshot
2015-02-10	Roland Schulz	Don't set CFLAGS for Phi in toolchain	commit \| commitdiff \| tree \| snapshot
2015-02-10	Roland Schulz	Work-around for ICC 15 on Phi	commit \| commitdiff \| tree \| snapshot
2015-02-07	Roland Schulz	Make FindBoost quite	commit \| commitdiff \| tree \| snapshot
2015-02-07	Teemu Murtola	Support more complex fixed position selections	commit \| commitdiff \| tree \| snapshot
2015-02-06	Berk Hess	Re-enabled SIMD for angles and dihedrals	commit \| commitdiff \| tree \| snapshot
2015-02-04	Mark Abraham	Implement user guide	commit \| commitdiff \| tree \| snapshot
2015-02-04	Berk Hess	Correct CUDA kernel energy flag	commit \| commitdiff \| tree \| snapshot
2015-02-02	Mark Abraham	Merge branch release-5-0	commit \| commitdiff \| tree \| snapshot
2015-02-02	Mark Abraham	Avoid near-silent generation of zero energies	commit \| commitdiff \| tree \| snapshot
2015-02-02	Roland Schulz	Fix FP exception in FE	commit \| commitdiff \| tree \| snapshot
2015-02-02	Mark Abraham	Fix use of simd.h	commit \| commitdiff \| tree \| snapshot
2015-01-29	Teemu Murtola	Add input file options that accept missing files	commit \| commitdiff \| tree \| snapshot
2015-01-29	John Baxter	Removes some unnecessary ternary conditionals	commit \| commitdiff \| tree \| snapshot
2015-01-27	Roland Schulz	Workaround for MemorySanitizer	commit \| commitdiff \| tree \| snapshot
2015-01-27	Roland Schulz	Fix unitlized memory read in checkpoint	commit \| commitdiff \| tree \| snapshot
2015-01-24	Teemu Murtola	Remove old selection parser error handling code	commit \| commitdiff \| tree \| snapshot
2015-01-24	Teemu Murtola	Improve selection error messages (use exceptions)	commit \| commitdiff \| tree \| snapshot
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