BioD PNPI Git Repos - alexxy/gromacs.git/shortlog

biod.pnpi.spb.ru / alexxy / gromacs.git / shortlog

2015-05-22	Teemu Murtola	Merge release-5-0 into master	commit \| commitdiff \| tree \| snapshot
2015-05-22	Teemu Murtola	Avoid crash with empty reference for 'same as' selection	commit \| commitdiff \| tree \| snapshot
2015-05-22	Teemu Murtola	Add subsection depth to HelpWriterContext	commit \| commitdiff \| tree \| snapshot
2015-05-22	Teemu Murtola	Add note about atom order in selections	commit \| commitdiff \| tree \| snapshot
2015-05-21	Teemu Murtola	Restructure CommandLineModuleManager tests	commit \| commitdiff \| tree \| snapshot
2015-05-21	Mark Abraham	Add integration test for empty domain	commit \| commitdiff \| tree \| snapshot
2015-05-20	Teemu Murtola	Fix handling of real-valued 'to' selection ranges	commit \| commitdiff \| tree \| snapshot
2015-05-20	Teemu Murtola	Fix dependencies for regression test custom target	commit \| commitdiff \| tree \| snapshot
2015-05-20	Teemu Murtola	Some tests for 'gmx help -export rst'	commit \| commitdiff \| tree \| snapshot
2015-05-19	Mark Abraham	Add checks for correct use of SIMD headers.	commit \| commitdiff \| tree \| snapshot
2015-05-19	Mark Abraham	Refactor FFTW setup	commit \| commitdiff \| tree \| snapshot
2015-05-18	Teemu Murtola	Merge "Merge branch origin/release-5-0"	commit \| commitdiff \| tree \| snapshot
2015-05-17	Erik Lindahl	Added hacks for SIMD rvec/load store in lincs & bondeds	commit \| commitdiff \| tree \| snapshot
2015-05-17	Teemu Murtola	Move a few defines to buildinfo.h	commit \| commitdiff \| tree \| snapshot
2015-05-17	Mark Abraham	Merge branch origin/release-5-0	commit \| commitdiff \| tree \| snapshot
2015-05-16	Berk Hess	LINCS thread tasks can now be independent	commit \| commitdiff \| tree \| snapshot
2015-05-16	Mark Abraham	Suppress GCC5 warnings with internal Boost	commit \| commitdiff \| tree \| snapshot
2015-05-16	Magnus Lundborg	TNG version 1.7.5	commit \| commitdiff \| tree \| snapshot
2015-05-16	Alexey Shvetsov	Make bond-atomtypes case sensitive	commit \| commitdiff \| tree \| snapshot
2015-05-15	Szilard Pall	Assert the size of non-bonded GPU work units	commit \| commitdiff \| tree \| snapshot
2015-05-14	Mark Abraham	Fix own-FFTW build	commit \| commitdiff \| tree \| snapshot
2015-05-14	Szilard Pall	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree \| snapshot
2015-05-13	Berk Hess	Fixed CUDA error with empty domains	commit \| commitdiff \| tree \| snapshot
2015-05-13	Mark Abraham	Version bumps after new release	commit \| commitdiff \| tree \| snapshot
2015-05-13	Teemu Murtola	Remove remaining old-html content	commit \| commitdiff \| tree \| snapshot
2015-05-13	Mark Abraham	Version 5.0.5	commit \| commitdiff \| tree \| snapshot
2015-05-13	Berk Hess	Fix segv in g_covar	commit \| commitdiff \| tree \| snapshot
2015-05-13	Szilard Pall	Fix auto-downloaded regression test execution	commit \| commitdiff \| tree \| snapshot
2015-05-13	Roland Schulz	Facilitate linking of static binaries	commit \| commitdiff \| tree \| snapshot
2015-05-12	Mark Abraham	Fix uninitialized fields in grompp t_state	commit \| commitdiff \| tree \| snapshot
2015-05-12	Jochen Hub	OpenMP parallelization of g_wham	commit \| commitdiff \| tree \| snapshot
2015-05-12	Rossen Apostolov	Added a note about sc-coul being auto turned on.	commit \| commitdiff \| tree \| snapshot
2015-05-11	Mark Abraham	Work around gcc 5 warnings with Google Test	commit \| commitdiff \| tree \| snapshot
2015-05-11	Berk Hess	Changed FFTW warning from AVX to no SSE	commit \| commitdiff \| tree \| snapshot
2015-05-11	Teemu Murtola	Use single variable for expected Doxygen version	commit \| commitdiff \| tree \| snapshot
2015-05-10	Mark Abraham	Merge "Merge branch release-5-0"	commit \| commitdiff \| tree \| snapshot
2015-05-10	Teemu Murtola	Move some testutils and overview docs to dev guide	commit \| commitdiff \| tree \| snapshot
2015-05-10	Teemu Murtola	Print correct order for include order/style issues	commit \| commitdiff \| tree \| snapshot
2015-05-10	Teemu Murtola	Improve build system for Sphinx	commit \| commitdiff \| tree \| snapshot
2015-05-10	Teemu Murtola	Convert developer manual to rst	commit \| commitdiff \| tree \| snapshot
2015-05-09	Mark Abraham	Merge branch release-5-0	commit \| commitdiff \| tree \| snapshot
2015-05-07	Berk Hess	Removed non-ff atomtypes from oplsaa and charmm27	commit \| commitdiff \| tree \| snapshot
2015-05-06	Mark Abraham	Fixed recently-introduced couple-lambda warning message	commit \| commitdiff \| tree \| snapshot
2015-05-06	Szilárd Páll	Merge "Merge release-4-6 into release-5-0" into release-5-0	commit \| commitdiff \| tree \| snapshot
2015-05-06	Mark Abraham	Fix SIMD unit tests on BG/Q	commit \| commitdiff \| tree \| snapshot
2015-05-05	Mark Abraham	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree \| snapshot
2015-05-05	Teemu Murtola	Avoid rounding errors affecting results in one test	commit \| commitdiff \| tree \| snapshot
2015-05-05	Justin Lemkul	Fix for trjconv preserving box dimensions.	commit \| commitdiff \| tree \| snapshot
2015-05-04	Berk Hess	Fixed GPU non-local F copy local conditional	commit \| commitdiff \| tree \| snapshot
2015-04-30	Olivier Fisette	Fix error handling in gmx_tmpnam	commit \| commitdiff \| tree \| snapshot
2015-04-30	Michael Shirts	Fix for rarely occuring replica exchange error.	commit \| commitdiff \| tree \| snapshot
2015-04-30	Mark Abraham	Move GPU implementation to new interface	commit \| commitdiff \| tree \| snapshot
2015-04-28	Berk Hess	Re-enabled FMA for AVX-128-FMA	commit \| commitdiff \| tree \| snapshot
2015-04-28	Mark Abraham	Add application-clock NVML-based support for Quadro...	commit \| commitdiff \| tree \| snapshot
2015-04-27	Mark Abraham	Clean up remnants in mdrun	commit \| commitdiff \| tree \| snapshot
2015-04-24	Mark Abraham	Add developer docs for new documentation infrastructure	commit \| commitdiff \| tree \| snapshot
2015-04-24	Teemu Murtola	Add section on naming conventions to dev manual	commit \| commitdiff \| tree \| snapshot
2015-04-23	Mark Abraham	First beta release of 5.1	commit \| commitdiff \| tree \| snapshot
2015-04-22	Berk Hess	Merge branch 'release-5-0'	commit \| commitdiff \| tree \| snapshot
2015-04-21	Szilárd Páll	Allow manually setting target GPU architectures	commit \| commitdiff \| tree \| snapshot
2015-04-21	Magnus Lundborg	TNG version 1.7.3	commit \| commitdiff \| tree \| snapshot
2015-04-21	Mark Abraham	Merge "Merge branch release-5-0"	commit \| commitdiff \| tree \| snapshot
2015-04-17	Berk Hess	Add value_ref and value to pull_coord_t	commit \| commitdiff \| tree \| snapshot
2015-04-17	Szilárd Páll	define CUDA version and texobj support in config.h	commit \| commitdiff \| tree \| snapshot
2015-04-17	Mark Abraham	Add comment about Andersen themostat and constraints	commit \| commitdiff \| tree \| snapshot
2015-04-17	Berk Hess	Correct -ntmpi auto for intel nehalem and older	commit \| commitdiff \| tree \| snapshot
2015-04-17	David van der...	Updated exponential fitting to make it robust.	commit \| commitdiff \| tree \| snapshot
2015-04-09	Mark Abraham	Merge branch release-5-0	commit \| commitdiff \| tree \| snapshot
2015-04-09	David van der...	Clarified comments for time-dependent electric fields.	commit \| commitdiff \| tree \| snapshot
2015-04-08	David van der...	Fixed incorrect output of gb_algorith as sa_algorithm.	commit \| commitdiff \| tree \| snapshot
2015-04-08	Berk Hess	Added pull geometry direction-relative	commit \| commitdiff \| tree \| snapshot
2015-04-08	Mark Abraham	Update mdrun Doxygen	commit \| commitdiff \| tree \| snapshot
2015-04-08	Mark Abraham	Made pme_work_t opaque	commit \| commitdiff \| tree \| snapshot
2015-04-01	Mark Abraham	Initialize n_tricvec field of t_pbc always	commit \| commitdiff \| tree \| snapshot
2015-04-01	Berk Hess	Corrected force-switch manual section	commit \| commitdiff \| tree \| snapshot
2015-03-30	Erik Lindahl	Quote from Szilard's talk at GTC2015	commit \| commitdiff \| tree \| snapshot
2015-03-30	Mark Abraham	Improved man-page machinery	commit \| commitdiff \| tree \| snapshot
2015-03-25	Erik Lindahl	Quote from Jen-Hsun at the NVIDIA GTC conference 2015	commit \| commitdiff \| tree \| snapshot
2015-03-19	Berk Hess	Removed reduction of dH/dl without FE	commit \| commitdiff \| tree \| snapshot
2015-03-19	Mark Abraham	Made error message more generic	commit \| commitdiff \| tree \| snapshot
2015-03-19	Mark Abraham	Extend Force sub-counters	commit \| commitdiff \| tree \| snapshot
2015-03-17	Roland Schulz	Fix linking with static libxml2	commit \| commitdiff \| tree \| snapshot
2015-03-13	Mark Abraham	Made GPU warning messages more user friendly	commit \| commitdiff \| tree \| snapshot
2015-03-12	Berk Hess	Fixed mdrun fp exception with -debug	commit \| commitdiff \| tree \| snapshot
2015-03-11	Berk Hess	Added update x copy-back to update timer	commit \| commitdiff \| tree \| snapshot
2015-03-11	Berk Hess	Reduced cost of Berendsen pressure coupling	commit \| commitdiff \| tree \| snapshot
2015-03-06	Berk Hess	Improve threading of bondeds	commit \| commitdiff \| tree \| snapshot
2015-03-06	Mark Abraham	Restore wallcycle subcounter name to "Bonded F"	commit \| commitdiff \| tree \| snapshot
2015-03-05	Mark Abraham	Fix Andersen thermostats	commit \| commitdiff \| tree \| snapshot
2015-03-05	Berk Hess	Made DD exclusion processing more efficient	commit \| commitdiff \| tree \| snapshot
2015-03-05	Berk Hess	SIMD acceleration for LINCS	commit \| commitdiff \| tree \| snapshot
2015-03-04	Berk Hess	Allow pull groups of 1 atom with mass 0	commit \| commitdiff \| tree \| snapshot
2015-03-04	Berk Hess	COM pulling options per coord, improved cylinder	commit \| commitdiff \| tree \| snapshot
2015-03-04	Roland Schulz	Fix GCC5 warnings	commit \| commitdiff \| tree \| snapshot
2015-03-03	Mark Abraham	Re-implement gmx tune_pme -cpi	commit \| commitdiff \| tree \| snapshot
2015-03-03	Erik Lindahl	Added single-accuracy SIMD double math functions	commit \| commitdiff \| tree \| snapshot
2015-03-03	Roland Schulz	nbnxn utils performance improvement for Phi	commit \| commitdiff \| tree \| snapshot
2015-03-03	Berk Hess	Fix div by zero in PP/PME ratio	commit \| commitdiff \| tree \| snapshot
2015-03-03	Mark Abraham	Move mdrun signalling code	commit \| commitdiff \| tree \| snapshot
2015-03-03	Mark Abraham	Add test that plain multi-simulation works	commit \| commitdiff \| tree \| snapshot
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