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Fix NVML detection on Windows
2014-12-15
Roland Schulz
Fix NVML detection on Windows
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2014-12-15
Teemu Murtola
Use new XML format with cppcheck
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2014-12-13
Roland Schulz
Use bitmask for bonded
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2014-12-13
David van der Spoel
Four new quotes from around the world.
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2014-12-13
Mark Abraham
Remove heuristic group-scheme neighbour-list updates
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2014-12-13
Mark Abraham
Fix latent bug in OpenMP initialization
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2014-12-11
Teemu Murtola
Convert gmx rdf to the C++ framework
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2014-12-10
Teemu Murtola
Fix misc. analysis neighborhood search issues
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2014-12-09
Teemu Murtola
Track locations for selection parsing products
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2014-12-08
Mark Abraham
Merge "Merge release-5-0 into master"
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2014-12-08
Teemu Murtola
Rectangular grid for analysis nbsearch
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2014-12-08
Mark Abraham
Add basic GPU support for gmx tune-pme
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2014-12-06
Teemu Murtola
Simplify analysisdata parallelism model
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2014-12-05
Jiri Kraus
Add optional NVIDIA Management Library (NVML) Integration
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2014-12-05
Mark Abraham
Clean up non-PME part of ewald module
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2014-12-05
Mark Abraham
Make mdrun print the list of compatible GPUs
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2014-12-05
Mark Abraham
Created do_force_listed and moved code to the module
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2014-12-05
Berk Hess
Make domdec a proper module
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2014-12-05
Berk Hess
Clarified grompp pull error messages
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2014-12-05
Teemu Murtola
Improve selection parsing error reporting
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2014-12-05
Berk Hess
Avoid race on dvdl with Verlet+OpenMP+LINCS+FE+VV
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2014-12-05
Teemu Murtola
Non-periodic nbsearch with grid based on bounding box
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2014-12-04
Teemu Murtola
Move/add uncrustify documentation to dev manual
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2014-12-02
Teemu Murtola
Add 'gmx pairdist' tool as partial g_mindist replacement
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2014-12-02
Teemu Murtola
Analysis grid nbsearch for more cases
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2014-12-01
Berk Hess
Added warning for unnecessary soft-core
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2014-11-29
Teemu Murtola
Basic support for 'z of ...' selections
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2014-11-29
Szilárd Páll
Add kernel and compiler suport for CC 3.7 devices
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2014-11-29
Christian Wennberg
Fixed typo in amber99sb-ildn force field
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2014-11-28
Teemu Murtola
Clarify memory management for selection values
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2014-11-28
Teemu Murtola
Helper function for grouping selection positions
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2014-11-28
David van der Spoel
Fixes recently introduced bug in gmx analyze.
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2014-11-27
Mark Abraham
Remove use of interaction_mask_indices on BG/Q
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2014-11-27
Teemu Murtola
Port gmx-solvate tests to use CommandLineTestBase
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2014-11-27
Mark Abraham
Merge "Merge release-5-0 into master"
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2014-11-27
Teemu Murtola
Further insert-molecules cleanup
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2014-11-26
Teemu Murtola
Add some unit tests for surface area calculation
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2014-11-26
Mark Abraham
Fix trjconv modifying fr.time unnecessarily
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2014-11-26
Ake Sandgren
Fix problem with mixed affinity mask on different nodes.
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2014-11-26
Berk Hess
Fixed triclinic 1xNx1 domain decomposition
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2014-11-26
Mark Abraham
Move code to domdec module folder
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2014-11-25
Berk Hess
Fixed twin-range + freeze + constraints
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2014-11-24
Magnus Lundborg
When writing TNG the input must contain molecule data.
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2014-11-23
Teemu Murtola
Rename doc-* targets to be less generic
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2014-11-23
Roland Schulz
Set GMX_SIMD to MIC for Xeon Phi
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2014-11-21
Teemu Murtola
Skeleton for a developer manual
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2014-11-17
Szilárd Páll
Add CUDA compiler support for CC 5.0
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2014-11-14
Teemu Murtola
Refactor position-evaluated selection keyword handling
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2014-11-12
Roland Schulz
Use stat to check that paths are equivalent
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2014-11-12
Berk Hess
Corrected parameter for sorting on search grid
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2014-11-12
Berk Hess
Fix DD bonded interaction range print
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2014-11-12
Roland Schulz
Add bitmask type
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2014-11-12
Carsten Kutzner
Updated some .mdp file variables to use "-" instead...
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2014-11-09
Justin Lemkul
Removed spurious GLY dihedral in AMBER03.
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2014-11-09
Roland Schulz
Fix CMP0054 cmake 3.1.0 warnings
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2014-10-30
Teemu Murtola
Fix memory leak in default index group creation
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2014-10-30
Roland Schulz
Merge "Merge release-5-0 into master"
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2014-10-29
Teemu Murtola
Improve analysis nbsearch grid mapping
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2014-10-26
Roland Schulz
Add Windows support for host-/username
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2014-10-22
Teemu Murtola
Move basic macros from common.h to basedefinitions.h
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2014-10-22
Roland Schulz
Remove Catamount cmake
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2014-10-21
Roland Schulz
Fix C++11 flags for MingW
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2014-10-20
Roland Schulz
Create scoped_cptr to replace scoped_ptr_sfree
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2014-10-20
Berk Hess
Removed f_novirsum reduction in Verlet scheme
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2014-10-20
Carsten Kutzner
Fix order of ED/swap blocks during checkpoint reading.
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2014-10-14
David van der Spoel
Reorganizing analysis of correlation functions.
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2014-10-14
Teemu Murtola
Use analysis nbsearch in insert-molecules
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2014-10-12
Roland Schulz
Fix misidentification of dot in path name
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2014-10-11
Teemu Murtola
Generalize command-line unit testing machinery
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2014-10-05
Roland Schulz
Allow runAsMainSingleModule to be called more than...
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2014-10-03
Mark Abraham
Move pair-interaction code into listed-forces module
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2014-10-03
Teemu Murtola
More robust handling for installed headers
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2014-09-30
Erik Lindahl
Add Power8 VSX SIMD support
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2014-09-30
Szilard Pall
Fix incorrect LJ cut-off with GPU + PME tuning
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2014-09-30
Berk Hess
Avoid DLB with overloaded PME ranks
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2014-09-30
Berk Hess
Added GPU local wait to load balancing
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2014-09-30
Erik Lindahl
Avoid using function calls in OpenMP directives
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2014-09-29
Berk Hess
Domain decomposition now checks the rlist buffer
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2014-09-29
Roland Schulz
Clarify GCC+Win+AVX warning
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2014-09-29
Berk Hess
SIMD acceleration for RB dihedrals
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2014-09-29
Mark Abraham
Merge "Merge release-4-6 into release-5-0" into release-5-0
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2014-09-29
Berk Hess
Avoid PME tuning decreasing rcoulomb
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2014-09-29
Berk Hess
Fix calc_grid avoiding PME grid factor 84
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2014-09-26
Rossen Apostolov
Converted swap module to C++.
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2014-09-23
Mark Abraham
Renamed bonded module as 'listed-forces'
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2014-09-23
Mark Abraham
Refactor mdrun integration tests
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2014-09-23
Roland Schulz
Fix ICC warnings
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2014-09-23
David van der Spoel
Fixes potential bug in neighborsearching.
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2014-09-23
Teemu Murtola
Generate man pages and completions by default if possible
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2014-09-22
Teemu Murtola
Merge "Merge release-5-0 into master"
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2014-09-20
Teemu Murtola
Remove duplication in version info target creation
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2014-09-20
Erik Lindahl
Added a bunch of new and old quotes.
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2014-09-20
Teemu Murtola
Fix patterns for .gitattributes
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2014-09-20
Roland Schulz
Minor performance improments
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2014-09-19
Teemu Murtola
Proper dependencies for Doxygen build rules
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2014-09-19
Teemu Murtola
Fix histogram resampling output bin positions
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2014-09-19
Teemu Murtola
Embed module dependency graph in Doxygen docs
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2014-09-19
Teemu Murtola
More precise analysisdata histogram accumulation
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2014-09-19
Teemu Murtola
Misc. Doxygen build system improvements
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2014-09-18
Roland Schulz
Fix double linkage for tests
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