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2019-12-18	Szilárd Páll	Allow x D2H to overlap with GPU force compute	commit \| commitdiff \| tree
2019-12-17	Szilárd Páll	Comment the use of waitCoordinatesCopiedToDevice	commit \| commitdiff \| tree
2019-12-17	Szilárd Páll	Add wallcycle counting to StatePropagatorDataGpu	commit \| commitdiff \| tree
2019-12-12	Szilárd Páll	Allow overlapping CPU force H2D with compute	commit \| commitdiff \| tree
2019-11-17	Szilárd Páll	Trigger ocl_nbnxm_kernels target with clang-tidy	commit \| commitdiff \| tree
2019-11-17	Szilárd Páll	Fix clang-tidy 8 warnings in OpenCL nbnxm kernels	commit \| commitdiff \| tree
2019-11-03	Szilárd Páll	Improve SimulationWorkload doxygen	commit \| commitdiff \| tree
2019-11-01	Szilárd Páll	Rename reference checksum generating target	commit \| commitdiff \| tree
2019-11-01	Szilárd Páll	Use "-" in checksum-related version suffix	commit \| commitdiff \| tree
2019-11-01	Szilárd Páll	Improve workload data structures' docs	commit \| commitdiff \| tree
2019-10-28	Szilárd Páll	Extend SimulationWorkload with CPU flags	commit \| commitdiff \| tree
2019-10-21	Szilárd Páll	Remove unsupported configs from the gpuupdate matrix	commit \| commitdiff \| tree
2019-10-21	Szilárd Páll	Override GMX_GPU_DD_COMMS if nonbondeds are off	commit \| commitdiff \| tree
2019-10-18	Szilárd Páll	Add strict assertions on x synchronizer in PME	commit \| commitdiff \| tree
2019-10-18	Szilárd Páll	Fix genion clang-8 warning	commit \| commitdiff \| tree
2019-10-17	Szilárd Páll	Fix clang-tidy warnings in gpuhaloexchange_impl.cuh	commit \| commitdiff \| tree
2019-10-17	Szilárd Páll	Eliminate spurious GPU->CPU copy	commit \| commitdiff \| tree
2019-10-17	Szilárd Páll	Disable GMX_GPU_PME_PP_COMMS if PME is not offloaded	commit \| commitdiff \| tree
2019-10-16	Szilárd Páll	Fix initialization of field in PME data structure	commit \| commitdiff \| tree
2019-10-16	Szilárd Páll	Make the wait on nonbonded GPU results conditional	commit \| commitdiff \| tree
2019-10-15	Szilárd Páll	Trigger synchronizer when local forces are ready	commit \| commitdiff \| tree
2019-10-15	Szilárd Páll	Link GPU coordinate producer and consumer tasks	commit \| commitdiff \| tree
2019-10-13	Szilárd Páll	Enable StatePropagatorGpuData for force transfers	commit \| commitdiff \| tree
2019-10-13	Szilárd Páll	Move buffer ops / PME F reduction flags into StepWorkload	commit \| commitdiff \| tree
2019-10-10	Szilárd Páll	Migrate code to using SimulationWorkload flags	commit \| commitdiff \| tree
2019-10-10	Szilárd Páll	Remove incorrect GPU task dependency	commit \| commitdiff \| tree
2019-10-10	Szilárd Páll	Fix conditions for building StatePropagatorDataGpu	commit \| commitdiff \| tree
2019-10-10	Szilárd Páll	Construct a struct with development feature flags	commit \| commitdiff \| tree
2019-10-10	Szilárd Páll	Pass list of EventSynchronizers to GPU reduction	commit \| commitdiff \| tree
2019-10-10	Szilárd Páll	Add management for coordinates copy events into StatePropaga...	commit \| commitdiff \| tree
2019-10-09	Szilárd Páll	Add GPU event to mark that coordinate update is done	commit \| commitdiff \| tree
2019-09-30	Szilárd Páll	Move PME GPU program building later	commit \| commitdiff \| tree
2019-09-30	Szilárd Páll	Make the wait on PME GPU results conditional	commit \| commitdiff \| tree
2019-09-27	Szilárd Páll	Switch GPU update off by default	commit \| commitdiff \| tree
2019-09-25	Szilárd Páll	Merge remote-tracking branch 'origin/release-2019'	commit \| commitdiff \| tree
2019-09-18	Szilárd Páll	Set up workload data structures	commit \| commitdiff \| tree
2019-09-16	Szilárd Páll	Refactor GPU buf ops-related launches in do_force()	commit \| commitdiff \| tree
2019-09-16	Szilárd Páll	Eliminate unnecessary GPU stream dependency call	commit \| commitdiff \| tree
2019-09-13	Szilárd Páll	Fix GPU X buffer ops with empty domain	commit \| commitdiff \| tree
2019-09-12	Szilárd Páll	Reorganize on-GPU PME force reduction flag handling	commit \| commitdiff \| tree
2019-09-11	Szilárd Páll	Fix gpucomm matrix	commit \| commitdiff \| tree
2019-09-10	Szilárd Páll	Eliminate raw force flags in do_force_lowlevel()	commit \| commitdiff \| tree
2019-09-10	Szilárd Páll	Use thread-MPI in the gpucomm matrix	commit \| commitdiff \| tree
2019-09-09	Szilárd Páll	Assert the types of OpenCL kernels arguments	commit \| commitdiff \| tree
2019-09-09	Szilárd Páll	Pass gmx::ForceFlags to CPU nbnxm dispatch code	commit \| commitdiff \| tree
2019-09-09	Szilárd Páll	Pass the new gmx::ForceFlags to the nbnxm module	commit \| commitdiff \| tree
2019-09-06	Szilárd Páll	Add gpuupdate and gpucomm OnDemand tokens	commit \| commitdiff \| tree
2019-09-04	Szilárd Páll	Bump ARM HPC toolchain in post-submit to v19.3	commit \| commitdiff \| tree
2019-09-04	Szilárd Páll	Add back a clang-tidy exception	commit \| commitdiff \| tree
2019-09-04	Szilárd Páll	Centralize more MD/force shedule flags	commit \| commitdiff \| tree
2019-08-28	Szilárd Páll	Add clang-tidy nightly test with SIMD + OpenCL	commit \| commitdiff \| tree
2019-08-28	Szilárd Páll	Move nonbonded GPU wait timing into the GPU module	commit \| commitdiff \| tree
2019-08-25	Szilárd Páll	clang-tidy 8 fixes for the GPU host code-path	commit \| commitdiff \| tree
2019-08-25	Szilárd Páll	Further fixes for clang-tidy clang version 8	commit \| commitdiff \| tree
2019-08-23	Szilárd Páll	Fix clang-tidy warnings in the OpenCL build	commit \| commitdiff \| tree
2019-08-23	Szilárd Páll	Fix clang tidy warnings in CUDA build	commit \| commitdiff \| tree
2019-08-19	Szilárd Páll	Bump clang-cuda post-submit compiler/CUDA version	commit \| commitdiff \| tree
2019-08-19	Szilárd Páll	Switch to ARM HPC toolchain v19.2 in post-submit	commit \| commitdiff \| tree
2019-08-19	Szilárd Páll	Work around clang CUDA device code codegen bug	commit \| commitdiff \| tree
2019-08-16	Szilárd Páll	Fix sim_util.cpp copyright header	commit \| commitdiff \| tree
2019-08-15	Szilárd Páll	Fix OpenCL gather reduction	commit \| commitdiff \| tree
2019-08-12	Szilárd Páll	Fix hwloc find package naming and quietness issues	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Store wcycle pointer in nonbonded_verlet_t	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Fixes for F buffer ops change	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Move cycle counting into the GPU bonded module	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Report when development feature flags are used	commit \| commitdiff \| tree
2019-07-31	Szilárd Páll	Move end of step GPU task launches to a function	commit \| commitdiff \| tree
2019-07-25	Szilárd Páll	Only stop the CUDA profiler if there are devices	commit \| commitdiff \| tree
2019-07-22	Szilárd Páll	Conditionally pin GPU-related grid data	commit \| commitdiff \| tree
2019-07-11	Szilárd Páll	Use HostVector for Grid/GridSet data need on-GPU	commit \| commitdiff \| tree
2019-07-08	Szilárd Páll	Eliminate a use of double precision in the GPU bonded...	commit \| commitdiff \| tree
2019-07-04	Szilárd Páll	Bump latest CUDA + gcc in the pre-submit matrix	commit \| commitdiff \| tree
2019-07-04	Szilárd Páll	Fix a -Wformat-truncation warning in tng	commit \| commitdiff \| tree
2019-07-01	Szilárd Páll	Refactor tracking of GPU short-range work/skipping	commit \| commitdiff \| tree
2019-06-30	Szilárd Páll	Create dedicated subcounter for nonbonded FEP	commit \| commitdiff \| tree
2019-06-28	Szilárd Páll	Separate CPU NB kernel and buffer clearing subcounters	commit \| commitdiff \| tree
2019-06-27	Szilárd Páll	Remove already resolved post-submit matrix TODO	commit \| commitdiff \| tree
2019-06-24	Szilárd Páll	Only use AVX512 in own-FFTW if GROMACS also uses it	commit \| commitdiff \| tree
2019-06-19	Szilárd Páll	Disable PME GPU on Apple OpenCL	commit \| commitdiff \| tree
2019-05-29	Szilárd Páll	Template x buffer ops call on whether GPU is used	commit \| commitdiff \| tree
2019-05-23	Szilárd Páll	Fix mulitple link refs in dev-manual	commit \| commitdiff \| tree
2019-05-20	Szilárd Páll	Improve X buffer ops kernel	commit \| commitdiff \| tree
2019-04-25	Szilárd Páll	Fix clang warning about NULL use	commit \| commitdiff \| tree
2019-04-25	Szilárd Páll	Avoid using AtomLocality::Count as a valid value	commit \| commitdiff \| tree
2019-04-24	Szilárd Páll	Fix CUDA fallback shmem gather reduction	commit \| commitdiff \| tree
2019-04-18	Szilárd Páll	Fix warnings & consolidate declarations	commit \| commitdiff \| tree
2019-04-16	Szilárd Páll	Move functions operating on enerdata out of force.cpp	commit \| commitdiff \| tree
2019-04-16	Szilárd Páll	Remove "coarse load balancing vars" from forcerec	commit \| commitdiff \| tree
2019-04-16	Szilárd Páll	Group scheme related cleanup	commit \| commitdiff \| tree
2019-04-16	Szilárd Páll	Remove Group scheme neighbor search wrapper	commit \| commitdiff \| tree
2019-04-15	Szilárd Páll	Add user guide note on AVX512 throttle in GPU runs	commit \| commitdiff \| tree
2019-04-05	Szilárd Páll	Revert "Temporarily disable ARM HPC compiler in post...	commit \| commitdiff \| tree
2019-04-05	Szilárd Páll	Revert "Temporarily disable ARM HPC compiler in post...	commit \| commitdiff \| tree
2019-04-02	Szilárd Páll	Temporarily disable ARM HPC compiler in post-submit	commit \| commitdiff \| tree
2019-04-02	Szilárd Páll	Temporarily disable ARM HPC compiler in post-submit	commit \| commitdiff \| tree
2019-03-28	Szilárd Páll	Better document GMX_OPENMP_MAX_THREADS	commit \| commitdiff \| tree
2019-03-26	Szilárd Páll	Skip PBC calculation when there are no listed forces	commit \| commitdiff \| tree
2019-03-26	Szilárd Páll	do_force_cutsVERLET cleanup	commit \| commitdiff \| tree
2019-03-21	Szilárd Páll	Reorder PBC setup in do_force_lowlevel	commit \| commitdiff \| tree
2019-03-13	Szilárd Páll	Reorganize search-time code in do_force_cutsVERLET	commit \| commitdiff \| tree
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