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Fix warnings with clang 9
2020-04-21
Mark Abraham
Fix warnings with clang 9
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2020-04-20
Artem Zhmurov
Fix the number of steps check when checkpoint is loaded
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2020-04-20
Paul Bauer
Make tests check code for warnings same as the main...
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2020-04-16
Artem Zhmurov
Unify CUDA and OpenCL lookup-table creation
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2020-04-14
Pascal Merz
Make bonded interaction checking more robust (modular...
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2020-04-13
Mark Abraham
Fix warnings for no-mpi build
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2020-04-12
Mark Abraham
Removed unused variable in force table generation
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2020-04-11
Paul Bauer
Add Image for GCC 7 and AMD OpenCL
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2020-04-07
Mark Abraham
Replace EnumOption with EnumerationArrayOption
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2020-04-07
M. Eric Irrgang
Prepare Python environments for GitLab CI pipeline.
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2020-04-07
Pascal Merz
Make global topology constant in energyOutput.printAnnealing...
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2020-04-06
Berk Hess
Move force buffer resizing to mdsetup
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2020-04-06
Pascal Merz
Make bonded interaction checking more robust (modular...
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2020-04-03
M. Eric Irrgang
Improve gmxapi Python package dependency resolution.
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2020-04-03
M. Eric Irrgang
Prune change-management.rst and update links.
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2020-03-31
M. Eric Irrgang
Prepare Python environments for GitLab CI pipeline.
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2020-03-30
M. Eric Irrgang
Require Python 3.6.
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2020-03-23
Artem Zhmurov
Introduce DeviceStreamManager
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2020-03-21
Paul Bauer
Add Documentation build to script
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2020-03-19
Paul Bauer
Add script to generate CI Docker files
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2020-03-19
Artem Zhmurov
Pass DeviceContext instead of GPU runtime data when...
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2020-03-18
M. Eric Irrgang
Add stub Variables documentation to GitLab CI doc.
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2020-03-16
M. Eric Irrgang
Define an argparse parent parser for container image...
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2020-03-14
Mark Abraham
Move testing code to test directory
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2020-03-12
Gilles Gouaillardet
grompp: fix the -ref <file> option
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2020-03-10
Artem Zhmurov
Use init(..) function to build DeviceContext
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2020-03-07
Berk Hess
Make shake work without graph
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2020-03-04
Mark Abraham
Improve TPI handling
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2020-03-02
Berk Hess
Fix center of mass motion removal with frozen atoms
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2020-03-02
Artem Zhmurov
Update the message on whether update and constraints...
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2020-03-02
Paul Bauer
Remove frozen atoms from VCM groups
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2020-02-27
Pascal Merz
Loosen gmxapi stopsignaler test
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2020-02-27
Pascal Merz
Extract and expose function to determine whether molecules...
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2020-02-26
Szilárd Páll
Remove outdated PME-GPU limitation in user guide
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2020-02-25
Magnus Lundborg
Fix out of sync checkpoint files in simulations sharing...
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2020-02-24
Paul Bauer
Fix clang-6 image template
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2020-02-20
Artem Zhmurov
Use CUDA float3 vector type instead of fvec in GPU...
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2020-01-29
Paul Bauer
Workaround for Gitlab archive size
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2020-01-29
Magnus Lundborg
More SIMD preparations in the FE calculations
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2020-01-29
Paul Bauer
Add replacement for symbol table
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2020-01-27
Mark Abraham
Remove element-size member fields
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2020-01-27
Mark Abraham
Make NbnxnGpu class with constructor
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2020-01-24
Szilárd Páll
Add target for offline PME OpenCL compilation
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2020-01-24
Magnus Lundborg
Removed SC RPower 48 from FEP kernel
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2020-01-17
Mark Abraham
Regularize nbnxm module doxygen
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2020-01-17
Paul Bauer
Fix bad link in developer docs
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2020-01-17
Berk Hess
Add check for shells and GPU update
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2020-01-13
Paul Bauer
Revert "Exclude build-system files from CPack"
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2020-01-13
Christoph Junghans
gmxManageMPI.cmake: convert MPI FLAGS to lists
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2020-01-09
Mark Abraham
Clean up ewald module internals
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2020-01-09
Mark Abraham
Split lines with many copyright years
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2020-01-03
M. Eric Irrgang
Remove transitional links for online gmxapi Python...
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2020-01-01
Paul Bauer
GROMACS 2020 release
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2020-01-01
Erik Lindahl
Add link to paper explaining GROMOS twin-range issues.
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2019-12-31
Mark Abraham
Avoid 386 O3 codegen bug even more
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2019-12-31
Artem Zhmurov
Inform user why forcing GPU update is not possible
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2019-12-31
Artem Zhmurov
Add description of GMX_FORCE_UPDATE_DEFAULT_GPU dev...
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2019-12-31
Artem Zhmurov
Fix gpuupdate matrix
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2019-12-28
Artem Zhmurov
Change the behavior of the GPU update UI
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2019-12-28
Mark Abraham
Merge "Merge origin/release-2019 into release-2020...
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2019-12-28
Paul Bauer
Remove membed from features
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2019-12-28
Mark Abraham
Remove support for ARMv7
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2019-12-28
Mark Abraham
Stop testing ARMv7
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2019-12-20
Szilárd Páll
Enable buffer ops when GMX_GPU_DD_COMMS is set
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2019-12-19
Paul Bauer
Fix regressiontests failing with ctest
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2019-12-18
Paul Bauer
Ignore build host for CI builds
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2019-12-17
Mark Abraham
Fix that tests intended for multiple ranks run that way
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2019-12-16
Szilárd Páll
Fix the GPU bonded stream with 1 PP + 1 PME rank
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2019-12-16
Berk Hess
Use ListOfLists in gmx_mtop_t and gmx_localtop_t
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2019-12-15
Christian Blau
Fix densityfitting stalling and energies
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2019-12-14
Mark Abraham
Simplify gmxapi RPATH handling
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2019-12-12
Mark Abraham
Merge "Merge branch 'origin/release-2020' into master"
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2019-12-12
Artem Zhmurov
Allow using GPU update with DD and update groups
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2019-12-11
Mark Abraham
Document DOMAINDECOMP(cr) correctly
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2019-12-11
Paul Bauer
Test parallel mpi only with openmp
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2019-12-04
Mark Abraham
Added OpenCL build to release matrix
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2019-12-04
Mark Abraham
Removed unnecessary link_directories command for gtest
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2019-11-29
Paul Bauer
Fix build error without thread or regular mpi
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2019-11-29
Mark Abraham
Merge branch release-2019 into release-2020
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2019-11-29
Artem Zhmurov
Rename some variables in GPU Update
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2019-11-28
Paul Bauer
Check for using correct hwloc headers and runtime
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2019-11-28
Artem Zhmurov
Clear device force buffer if it was reallocated
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2019-11-27
Artem Zhmurov
Add method for coordinates scaling into GPU update...
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2019-11-27
M. Eric Irrgang
Add gmxapi_extension tests to 'tests' target.
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2019-11-27
Alan Gray
Event-based Dependency for GPU Force Halo Exchange
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2019-11-26
Mark Abraham
Improve handling of task-assignment exceptions
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2019-11-25
Alan Gray
Fix race condition in GPU X halo exchange with GPU...
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2019-11-24
Christian Blau
InMemorySerializer with endianess swap.
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2019-11-21
Mark Abraham
Merge branch release-2020
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2019-11-21
Mark Abraham
New cool quote
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2019-11-20
Artem Zhmurov
Add D2H copies for the checkpointing
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2019-11-20
Artem Zhmurov
Move the copy of the velocities for the output closer...
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2019-11-20
Berk Hess
Quiet pdb2gmx and use gmx_fatal
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2019-11-20
M. Eric Irrgang
Remove stub content from gmxapi docs.
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2019-11-16
Mark Abraham
Relaxed listed forces test tolerances
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2019-11-06
Berk Hess
Deprecated sc-r-power=48
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2019-11-04
Paul Bauer
Add build for clang-format
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2019-11-04
Paul Bauer
Split up source code formatting scripts
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2019-11-04
Teemu Murtola
Update clang-format config
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2019-10-31
M. Eric Irrgang
Improve uniformity of OS X CMake configuration.
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