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2014-06-24	Mark Abraham	Manual fixes	commit \| commitdiff \| tree
2014-06-18	Mark Abraham	Made mdrun warn when generic kernels are used	commit \| commitdiff \| tree
2014-06-06	Mark Abraham	Merge release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-06-05	Mark Abraham	New quotes	commit \| commitdiff \| tree
2014-06-03	Mark Abraham	Use RNG correctly for v-rescale thermostat	commit \| commitdiff \| tree
2014-05-30	Mark Abraham	Finalize change from GMX_CPU_ACCELERATION to GMX_SIMD	commit \| commitdiff \| tree
2014-05-22	Mark Abraham	Add fatal errors for VV and twin-range MTS	commit \| commitdiff \| tree
2014-05-22	Mark Abraham	Clarified docs for use of mdrun -nstlist	commit \| commitdiff \| tree
2014-05-20	Mark Abraham	Fix copyright years for new code	commit \| commitdiff \| tree
2014-05-20	Mark Abraham	Add note about correct calling of wallcycle counter	commit \| commitdiff \| tree
2014-05-18	Mark Abraham	Fix indenting of .tpr parameter dump in mdrun log file	commit \| commitdiff \| tree
2014-05-13	Mark Abraham	Prohibit AVX_256 with buggy gcc 4.6.1	commit \| commitdiff \| tree
2014-04-29	Mark Abraham	Merge branch release-4-6 into release-5-0	commit \| commitdiff \| tree
2014-04-16	Mark Abraham	Fix and simplify version matching for running tests	commit \| commitdiff \| tree
2014-04-10	Mark Abraham	Merge branch 'release-4-6' into release-5-0	commit \| commitdiff \| tree
2014-04-10	Mark Abraham	Further fix to gmx tune-pme	commit \| commitdiff \| tree
2014-04-07	Mark Abraham	Fix invalid dereference in g_tune_pme	commit \| commitdiff \| tree
2014-04-07	Mark Abraham	Version bump for 5.0-rc1	commit \| commitdiff \| tree
2014-04-03	Mark Abraham	Move string-parsing code to where it can be reused	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Fixes for g_tune_pme for 5.0	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Fix bug accumulating nrank_pp_intranode on PME ranks	commit \| commitdiff \| tree
2014-04-02	Mark Abraham	Re-use gmx_greatest_common_divisor()	commit \| commitdiff \| tree
2014-03-31	Mark Abraham	Remove quote	commit \| commitdiff \| tree
2014-03-26	Mark Abraham	Fix use of inline in IMD	commit \| commitdiff \| tree
2014-03-23	Mark Abraham	Keep CMake quiet about non-detection of optional stuff	commit \| commitdiff \| tree
2014-03-23	Mark Abraham	Merge branch release-4-6	commit \| commitdiff \| tree
2014-03-23	Mark Abraham	Fix print_date_and_time	commit \| commitdiff \| tree
2014-03-18	Mark Abraham	Revert "Added new amber99sb-ildn-bsc0 force field."	commit \| commitdiff \| tree
2014-03-18	Mark Abraham	Removed more stuff related to gmx.ff and gmx2.ff	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	House-keeping for MTTK	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	Merge "Merge branch release-4-6"	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	Merge branch release-4-6	commit \| commitdiff \| tree
2014-03-17	Mark Abraham	Fix perturbation to Verlet scheme when not perturbing	commit \| commitdiff \| tree
2014-03-11	Mark Abraham	Fix MKL linking	commit \| commitdiff \| tree
2014-03-11	Mark Abraham	Avoid array-bounds warnings with gcc 4.8.2	commit \| commitdiff \| tree
2014-03-10	Mark Abraham	Fix dependency on swapcoords enums	commit \| commitdiff \| tree
2014-03-06	Mark Abraham	Fix formatting in install guide	commit \| commitdiff \| tree
2014-03-06	Mark Abraham	Fix CMake syntax error	commit \| commitdiff \| tree
2014-03-05	Mark Abraham	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2014-03-04	Mark Abraham	Add enum and docs for using tpx_version	commit \| commitdiff \| tree
2014-03-03	Mark Abraham	Fix calling SIMD group kernels	commit \| commitdiff \| tree
2014-03-01	Mark Abraham	Add fatal error for Andersen+constraints+DD	commit \| commitdiff \| tree
2014-02-26	Mark Abraham	Add ThreadSanitizer build type	commit \| commitdiff \| tree
2014-02-25	Mark Abraham	Keep compilers happy on BG/Q	commit \| commitdiff \| tree
2014-02-24	Mark Abraham	Clean up options for domain decomposition	commit \| commitdiff \| tree
2014-02-24	Mark Abraham	Permit warning-free use of Andersen thermostat	commit \| commitdiff \| tree
2014-02-24	Mark Abraham	Suppress icc warning for Boost 1.55 use of #pragma...	commit \| commitdiff \| tree
2014-02-21	Mark Abraham	Reinstate shell code with DD	commit \| commitdiff \| tree
2014-02-20	Mark Abraham	Remove particle decomposition	commit \| commitdiff \| tree
2014-02-20	Mark Abraham	avoid mdrun crash when rdtscp is not supported	commit \| commitdiff \| tree
2014-02-20	Mark Abraham	Add integration tests for replica exchange	commit \| commitdiff \| tree
2014-02-19	Mark Abraham	Make some variable names less cryptic	commit \| commitdiff \| tree
2014-02-18	Mark Abraham	Fix outstanding references to "CPU acceleration"	commit \| commitdiff \| tree
2014-02-18	Mark Abraham	Fix harmless bug with combination of group and twin...	commit \| commitdiff \| tree
2014-02-18	Mark Abraham	Extend TestFileManager	commit \| commitdiff \| tree
2014-02-16	Mark Abraham	Fix test reference data accidentally broken	commit \| commitdiff \| tree
2014-02-16	Mark Abraham	Remove support for .g87 and .xyz I/O formats	commit \| commitdiff \| tree
2014-02-12	Mark Abraham	Refactored 'solvate' and 'insert-molecules'	commit \| commitdiff \| tree
2014-02-12	Mark Abraham	Re-fix compiler warnings with scanner.cpp	commit \| commitdiff \| tree
2014-02-11	Mark Abraham	Split genbox into 'solvate' and 'insert-molecules'	commit \| commitdiff \| tree
2014-02-11	Mark Abraham	Update stuff for old BlueGene	commit \| commitdiff \| tree
2014-02-09	Mark Abraham	Move orientation restraints checks inside init function	commit \| commitdiff \| tree
2014-02-08	Mark Abraham	Clean up .log file dump of inputrec	commit \| commitdiff \| tree
2014-02-08	Mark Abraham	Issue fatal errors rather than use broken shell code	commit \| commitdiff \| tree
2014-02-07	Mark Abraham	Initialize inputrec better in genbox	commit \| commitdiff \| tree
2014-02-06	Mark Abraham	Remove antiquated and unused gmxpar.tex documentation	commit \| commitdiff \| tree
2014-02-05	Mark Abraham	Update description of genrestr	commit \| commitdiff \| tree
2014-02-04	Mark Abraham	Use feature to explain that tpbconv has moved	commit \| commitdiff \| tree
2014-02-03	Mark Abraham	Add hack to fix genbox	commit \| commitdiff \| tree
2014-02-03	Mark Abraham	Clean up genbox and associated code	commit \| commitdiff \| tree
2014-02-03	Mark Abraham	Improved wallcycle reporting	commit \| commitdiff \| tree
2014-01-30	Mark Abraham	Minor improvements to ewald_LRcorrection	commit \| commitdiff \| tree
2014-01-29	Mark Abraham	Improved dependencies on maths includes	commit \| commitdiff \| tree
2014-01-29	Mark Abraham	Keep clang Address Sanitizer happy	commit \| commitdiff \| tree
2014-01-28	Mark Abraham	Merge branch 'release-4-6'	commit \| commitdiff \| tree
2014-01-28	Mark Abraham	Remove "gmx trjconv -app"	commit \| commitdiff \| tree
2014-01-28	Mark Abraham	Remove unused fplog	commit \| commitdiff \| tree
2014-01-28	Mark Abraham	Unify logic for timing counts	commit \| commitdiff \| tree
2014-01-27	Mark Abraham	Don't number a list manually	commit \| commitdiff \| tree
2014-01-23	Mark Abraham	Break dependency of fileio on tools	commit \| commitdiff \| tree
2014-01-22	Mark Abraham	Update libxml2 CMake detection	commit \| commitdiff \| tree
2014-01-21	Mark Abraham	Move more preprocessing files into the module	commit \| commitdiff \| tree
2014-01-21	Mark Abraham	Ensure we don't #define constants before system headers	commit \| commitdiff \| tree
2014-01-21	Mark Abraham	Remove hidden option to gmx dump	commit \| commitdiff \| tree
2014-01-20	Mark Abraham	Remove various outdated things from the repo	commit \| commitdiff \| tree
2014-01-20	Mark Abraham	Rename 'gmx tpbconv' to 'gmx convert-tpr'	commit \| commitdiff \| tree
2014-01-20	Mark Abraham	Fix .gitignore of some files	commit \| commitdiff \| tree
2014-01-19	Mark Abraham	Clean up after gmxcpp	commit \| commitdiff \| tree
2014-01-19	Mark Abraham	Move dump, check and tpbconv utilities	commit \| commitdiff \| tree
2014-01-17	Mark Abraham	Fix, simplify and test XTC writing	commit \| commitdiff \| tree
2014-01-17	Mark Abraham	Clean up inputrec reading	commit \| commitdiff \| tree
2014-01-14	Mark Abraham	Stop doing cppcheck on src/external	commit \| commitdiff \| tree
2014-01-14	Mark Abraham	Remove useless trjcat -prec option	commit \| commitdiff \| tree
2014-01-13	Mark Abraham	Fix mdrun integration tests	commit \| commitdiff \| tree
2014-01-08	Mark Abraham	Remove unreachable fatal error	commit \| commitdiff \| tree
2014-01-08	Mark Abraham	Remove unused debug code	commit \| commitdiff \| tree
2014-01-08	Mark Abraham	Add helpful note about changed default behaviour	commit \| commitdiff \| tree
2014-01-08	Mark Abraham	Create math module	commit \| commitdiff \| tree
2013-12-19	Mark Abraham	Fix non-critical typo in #ifdef GMX_OMPEN_MP	commit \| commitdiff \| tree
2013-12-05	Mark Abraham	Version bump after 5.0-beta1 release	commit \| commitdiff \| tree
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