BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	Mark Abraham <mark.j.abraham@gmail.com>
	Sun, 24 Nov 2013 11:55:28 +0000 (12:55 +0100)
committer	Mark Abraham <mark.j.abraham@gmail.com>
	Wed, 8 Jan 2014 13:17:12 +0000 (14:17 +0100)
commit	b551c5e033087ae26986ef07f93e0c78b5cc1b4d
tree	267bf2fbe4b36b92ace8a70d644b445a84015ef4	tree \| snapshot
parent	8975a03419fcddfd882cac84be2142bfc7c5a1ea	commit \| diff

Create math module

Renamed */maths.[ch] to */math/utilities.[ch]. Added license
statement for Sun FDLIBM. Uncrustified files in new module. Removed
orphan crecipdata.c file and invsqrt_test.c. Updated #include guards.
Moved some non-performance-sensitive function definitions from maths.h
to utilities.c.

A future patch will deal with vec.h.

Change-Id: I954cc48487c1af7f59f5a18c012c76d4297f7cab

60 files changed:

COPYING		diff \| blob \| history
src/gromacs/CMakeLists.txt		diff \| blob \| history
src/gromacs/analysisdata/modules/displacement.cpp		diff \| blob \| history
src/gromacs/fileio/matio.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_bar.c		diff \| blob \| history
src/gromacs/gmxana/gmx_chi.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dielectric.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dos.c		diff \| blob \| history
src/gromacs/gmxana/gmx_dyndom.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genconf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_genion.c		diff \| blob \| history
src/gromacs/gmxana/gmx_helix.c		diff \| blob \| history
src/gromacs/gmxana/gmx_msd.c		diff \| blob \| history
src/gromacs/gmxana/gmx_tcaf.c		diff \| blob \| history
src/gromacs/gmxana/gmx_vanhove.c		diff \| blob \| history
src/gromacs/gmxana/gmx_velacc.c		diff \| blob \| history
src/gromacs/gmxlib/atomprop.c		diff \| blob \| history
src/gromacs/gmxlib/bondfree.c		diff \| blob \| history
src/gromacs/gmxlib/calch.c		diff \| blob \| history
src/gromacs/gmxlib/crecipdata.c	[deleted file]	blob \| history
src/gromacs/gmxlib/do_fit.c		diff \| blob \| history
src/gromacs/gmxlib/ewald_util.c		diff \| blob \| history
src/gromacs/gmxlib/gmx_random.c		diff \| blob \| history
src/gromacs/gmxlib/invsqrt_test.c	[deleted file]	blob \| history
src/gromacs/gmxlib/nonbonded/nonbonded.c		diff \| blob \| history
src/gromacs/gmxlib/pbc.c		diff \| blob \| history
src/gromacs/gmxlib/sfactor.c		diff \| blob \| history
src/gromacs/gmxpreprocess/topio.c		diff \| blob \| history
src/gromacs/legacyheaders/update.h		diff \| blob \| history
src/gromacs/legacyheaders/vec.h		diff \| blob \| history
src/gromacs/legacyheaders/viewit.h		diff \| blob \| history
src/gromacs/math/3dview.c	[moved from src/gromacs/gmxlib/3dview.c with 98% similarity]	diff \| blob \| history
src/gromacs/math/3dview.h	[moved from src/gromacs/legacyheaders/3dview.h with 95% similarity]	diff \| blob \| history
src/gromacs/math/CMakeLists.txt	[new file with mode: 0644]	blob
src/gromacs/math/utilities.c	[moved from src/gromacs/gmxlib/maths.c with 97% similarity]	diff \| blob \| history
src/gromacs/math/utilities.h	[moved from src/gromacs/legacyheaders/maths.h with 82% similarity]	diff \| blob \| history
src/gromacs/mdlib/adress.c		diff \| blob \| history
src/gromacs/mdlib/ebin.c		diff \| blob \| history
src/gromacs/mdlib/forcerec.c		diff \| blob \| history
src/gromacs/mdlib/mdatom.c		diff \| blob \| history
src/gromacs/mdlib/nbnxn_cuda/nbnxn_cuda_kernel.cuh		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_common.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_common.h		diff \| blob \| history
src/gromacs/mdlib/nbnxn_search.c		diff \| blob \| history
src/gromacs/mdlib/ns.c		diff \| blob \| history
src/gromacs/mdlib/stat.c		diff \| blob \| history
src/gromacs/mdlib/tables.c		diff \| blob \| history
src/gromacs/mdlib/wall.c		diff \| blob \| history
src/gromacs/selection/evaluate.cpp		diff \| blob \| history
src/gromacs/selection/sm_compare.cpp		diff \| blob \| history
src/gromacs/selection/sm_insolidangle.cpp		diff \| blob \| history
src/programs/gmx/convparm.c		diff \| blob \| history
src/programs/gmx/g_x2top.c		diff \| blob \| history
src/programs/gmx/nm2type.c		diff \| blob \| history
src/programs/view/manager.cpp		diff \| blob \| history
src/programs/view/manager.h		diff \| blob \| history
src/programs/view/molps.cpp		diff \| blob \| history
src/programs/view/nmol.cpp		diff \| blob \| history
src/testutils/testasserts.h		diff \| blob \| history

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